RNA–Protein interactions for RNA: ENST00000531474.2

NXF1-209, Transcript of nuclear RNA export factor 1, human

TSL 3

Gene NXF1, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-209	ENST00000531474	SNRPA1	P09661	255 aa	Known RBP	12.12	□□□□□ -0.47
NXF1-209	ENST00000531474	KRT24	Q2M2I5	525 aa		12.12	□□□□□ -0.47
NXF1-209	ENST00000531474	SPINK5	Q9NQ38	1064 aa	Predicted RBP	12.12	□□□□□ -0.47
NXF1-209	ENST00000531474	C5	P01031	1676 aa		12.12	□□□□□ -0.47
NXF1-209	ENST00000531474	ZNF831	Q5JPB2	1677 aa		12.11	□□□□□ -0.47
NXF1-209	ENST00000531474	PRAMEF22	A3QJZ6	481 aa		12.11	□□□□□ -0.47
NXF1-209	ENST00000531474	NPM3	O75607	178 aa	Known RBP	12.11	□□□□□ -0.47
NXF1-209	ENST00000531474	STARD3NL	O95772	234 aa		12.11	□□□□□ -0.47
NXF1-209	ENST00000531474	HMGB2	P26583	209 aa	Known RBP	12.11	□□□□□ -0.47
NXF1-209	ENST00000531474	AAMP	Q13685	434 aa		12.11	□□□□□ -0.47
NXF1-209	ENST00000531474	NBPF14	Q5TI25	921 aa		12.11	□□□□□ -0.47
NXF1-209	ENST00000531474	AK7	Q96M32	723 aa		12.11	□□□□□ -0.47
NXF1-209	ENST00000531474	TEX13A	Q9BXU3	409 aa	Predicted RBP	12.11	□□□□□ -0.47
NXF1-209	ENST00000531474	ANO8	Q9HCE9	1232 aa	Predicted RBP	12.11	□□□□□ -0.47
NXF1-209	ENST00000531474	STK32B	Q9NY57	414 aa		12.11	□□□□□ -0.47
NXF1-209	ENST00000531474	CIC	Q96RK0	1608 aa	Predicted RBP	12.11	□□□□□ -0.47
NXF1-209	ENST00000531474	GIGYF1	O75420	1035 aa	Predicted RBP	12.1	□□□□□ -0.47
NXF1-209	ENST00000531474	CYP19A1	P11511	503 aa	Predicted RBP	12.1	□□□□□ -0.47
NXF1-209	ENST00000531474	ZNF827	Q17R98	1081 aa		12.1	□□□□□ -0.47
NXF1-209	ENST00000531474	B4GALNT3	Q6L9W6	998 aa		12.1	□□□□□ -0.47
NXF1-209	ENST00000531474	C4B	P0C0L5	1744 aa		12.1	□□□□□ -0.47
NXF1-209	ENST00000531474	CNTNAP4	Q9C0A0	1308 aa		12.1	□□□□□ -0.47
NXF1-209	ENST00000531474	GNPAT	O15228	680 aa		12.09	□□□□□ -0.47
NXF1-209	ENST00000531474	CRKL	P46109	303 aa	Known RBP	12.09	□□□□□ -0.47
NXF1-209	ENST00000531474	C8orf58	Q8NAV2	365 aa		12.09	□□□□□ -0.47
NXF1-209	ENST00000531474	AKT1S1	Q96B36	256 aa		12.09	□□□□□ -0.47
NXF1-209	ENST00000531474	TSHZ2	Q9NRE2	1034 aa		12.09	□□□□□ -0.47
NXF1-209	ENST00000531474	CCDC87	Q9NVE4	849 aa		12.09	□□□□□ -0.47
NXF1-209	ENST00000531474	USP16	Q9Y5T5	823 aa		12.09	□□□□□ -0.47
NXF1-209	ENST00000531474	ELL2	O00472	640 aa	Predicted RBP	12.08	□□□□□ -0.48
NXF1-209	ENST00000531474	MS4A1	P11836	297 aa		12.08	□□□□□ -0.48
NXF1-209	ENST00000531474	EIF2S2	P20042	333 aa	Known RBP	12.08	□□□□□ -0.48
NXF1-209	ENST00000531474	EXOSC9	Q06265	439 aa	Known RBP	12.08	□□□□□ -0.48
NXF1-209	ENST00000531474	PDE3A	Q14432	1141 aa		12.08	□□□□□ -0.48
NXF1-209	ENST00000531474	SLC15A2	Q16348	729 aa		12.08	□□□□□ -0.48
NXF1-209	ENST00000531474	NECTIN2	Q92692	538 aa		12.08	□□□□□ -0.48
NXF1-209	ENST00000531474	TFCP2L1	Q9NZI6	479 aa		12.08	□□□□□ -0.48
NXF1-209	ENST00000531474	COL5A3	P25940	1745 aa	Predicted RBP	12.08	□□□□□ -0.48
NXF1-209	ENST00000531474	TAF1L	Q8IZX4	1826 aa		12.07	□□□□□ -0.48
NXF1-209	ENST00000531474	A1BG	P04217	495 aa		12.07	□□□□□ -0.48
NXF1-209	ENST00000531474	HOXB7	P09629	217 aa		12.07	□□□□□ -0.48
NXF1-209	ENST00000531474	CANX	P27824	592 aa	Known RBP	12.07	□□□□□ -0.48
NXF1-209	ENST00000531474	R3HDM1	Q15032	1099 aa	Known RBP	12.07	□□□□□ -0.48
NXF1-209	ENST00000531474	RC3H1	Q5TC82	1133 aa	Known RBP	12.07	□□□□□ -0.48
NXF1-209	ENST00000531474	HDGFL1	Q5TGJ6	251 aa		12.07	□□□□□ -0.48
NXF1-209	ENST00000531474	INTS5	Q6P9B9	1019 aa	Known RBP	12.07	□□□□□ -0.48
NXF1-209	ENST00000531474	EXOC6	Q8TAG9	804 aa		12.07	□□□□□ -0.48
NXF1-209	ENST00000531474	ZBTB1	Q9Y2K1	713 aa		12.07	□□□□□ -0.48
NXF1-209	ENST00000531474	LAMB4	A4D0S4	1761 aa		12.07	□□□□□ -0.48
NXF1-209	ENST00000531474	PSD	A5PKW4	1024 aa	Predicted RBP	12.06	□□□□□ -0.48
NXF1-209	ENST00000531474	PHF14	O94880	888 aa		12.06	□□□□□ -0.48
NXF1-209	ENST00000531474	PIP4K2A	P48426	406 aa	Predicted RBP	12.06	□□□□□ -0.48
NXF1-209	ENST00000531474	TWISTNB	Q3B726	338 aa	Predicted RBP	12.06	□□□□□ -0.48
NXF1-209	ENST00000531474	SMIM5	Q71RC9	77 aa		12.06	□□□□□ -0.48
NXF1-209	ENST00000531474	TSPYL6	Q8N831	410 aa		12.06	□□□□□ -0.48
NXF1-209	ENST00000531474	ZNF428	Q96B54	188 aa		12.06	□□□□□ -0.48
NXF1-209	ENST00000531474	RTCB	Q9Y3I0	505 aa	Known RBP	12.06	□□□□□ -0.48
NXF1-209	ENST00000531474	ZNF330	Q9Y3S2	320 aa	Predicted RBP	12.06	□□□□□ -0.48
NXF1-209	ENST00000531474	MSH5	O43196	834 aa		12.05	□□□□□ -0.48
NXF1-209	ENST00000531474	RPS6KA4	O75676	772 aa		12.05	□□□□□ -0.48
NXF1-209	ENST00000531474	SOS1	Q07889	1333 aa	Predicted RBP	12.05	□□□□□ -0.48
NXF1-209	ENST00000531474	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	12.04	□□□□□ -0.48
NXF1-209	ENST00000531474	NBPF26	B4DH59	902 aa		12.04	□□□□□ -0.48
NXF1-209	ENST00000531474	PLIN1	O60240	522 aa		12.04	□□□□□ -0.48
NXF1-209	ENST00000531474	MYL6B	P14649	208 aa		12.04	□□□□□ -0.48
NXF1-209	ENST00000531474	SSFA2	P28290	1259 aa		12.04	□□□□□ -0.48
NXF1-209	ENST00000531474	NBPF10	Q6P3W6	841 aa	Known RBP	12.04	□□□□□ -0.48
NXF1-209	ENST00000531474	NPM2	Q86SE8	214 aa	Known RBP	12.04	□□□□□ -0.48
NXF1-209	ENST00000531474	AMIGO3	Q86WK7	504 aa		12.04	□□□□□ -0.48
NXF1-209	ENST00000531474	NBPF15	Q8N660	670 aa		12.04	□□□□□ -0.48
NXF1-209	ENST00000531474	ERBB4	Q15303	1308 aa		12.04	□□□□□ -0.48
NXF1-209	ENST00000531474	PNPLA7	Q6ZV29	1317 aa		12.04	□□□□□ -0.48
NXF1-209	ENST00000531474	TCERG1	O14776	1098 aa	Known RBP	12.03	□□□□□ -0.48
NXF1-209	ENST00000531474	IL6ST	P40189	918 aa	Predicted RBP	12.03	□□□□□ -0.48
NXF1-209	ENST00000531474	RARS	P54136	660 aa	Known RBP	12.03	□□□□□ -0.48
NXF1-209	ENST00000531474	TRAPPC3L	Q5T215	181 aa		12.03	□□□□□ -0.48
NXF1-209	ENST00000531474	FLAD1	Q8NFF5	587 aa		12.03	□□□□□ -0.48
NXF1-209	ENST00000531474	CRBN	Q96SW2	442 aa		12.03	□□□□□ -0.48
NXF1-209	ENST00000531474	CHPF2	Q9P2E5	772 aa		12.03	□□□□□ -0.48
NXF1-209	ENST00000531474	COL15A1	P39059	1388 aa		12.03	□□□□□ -0.48
NXF1-209	ENST00000531474	VAMP4	O75379	141 aa		12.02	□□□□□ -0.49
NXF1-209	ENST00000531474	ANXA1	P04083	346 aa		12.02	□□□□□ -0.49
NXF1-209	ENST00000531474	PROSER3	Q2NL68	480 aa		12.02	□□□□□ -0.49
NXF1-209	ENST00000531474	CCDC30	Q5VVM6	783 aa		12.02	□□□□□ -0.49
NXF1-209	ENST00000531474	COL23A1	Q86Y22	540 aa	Predicted RBP	12.02	□□□□□ -0.49
NXF1-209	ENST00000531474	ARX	Q96QS3	562 aa		12.02	□□□□□ -0.49
NXF1-209	ENST00000531474	CHMP4A	Q9BY43	222 aa		12.02	□□□□□ -0.49
NXF1-209	ENST00000531474		A0A087WZG4	1122 aa		12.01	□□□□□ -0.49
NXF1-209	ENST00000531474	RFC4	P35249	363 aa		12.01	□□□□□ -0.49
NXF1-209	ENST00000531474	EIF5	P55010	431 aa	Known RBP	12.01	□□□□□ -0.49
NXF1-209	ENST00000531474	PDIA6	Q15084	440 aa		12.01	□□□□□ -0.49
NXF1-209	ENST00000531474	ARHGEF1	Q92888	912 aa	Known RBP	12.01	□□□□□ -0.49
NXF1-209	ENST00000531474	STK31	Q9BXU1	1019 aa		12.01	□□□□□ -0.49
NXF1-209	ENST00000531474	PDGFD	Q9GZP0	370 aa	Predicted RBP	12.01	□□□□□ -0.49
NXF1-209	ENST00000531474	DDX21	Q9NR30	783 aa	Known RBP eCLIP	12.01	□□□□□ -0.49
NXF1-209	ENST00000531474	DBF4	Q9UBU7	674 aa	Predicted RBP	12.01	□□□□□ -0.49
NXF1-209	ENST00000531474	TUBGCP6	Q96RT7	1819 aa		12.01	□□□□□ -0.49
NXF1-209	ENST00000531474	UBR3	Q6ZT12	1888 aa		12.01	□□□□□ -0.49
NXF1-209	ENST00000531474	MYH14	Q7Z406	1995 aa	Known RBP	12	□□□□□ -0.49
NXF1-209	ENST00000531474	BCAR3	O75815	825 aa		12	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms