RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 ATP2B4P23634 1241 aa7.2□□□□□ -1.26
CD44-233ENST00000531141 NBPF1Q3BBV0 1214 aa7.2□□□□□ -1.26
CD44-233ENST00000531141 POTEAQ6S8J7 498 aa7.2□□□□□ -1.26
CD44-233ENST00000531141 HOMEZQ8IX15 550 aa7.2□□□□□ -1.26
CD44-233ENST00000531141 CABP1Q9NZU7 370 aa7.2□□□□□ -1.26
CD44-233ENST00000531141 A0A1B0GTH6 734 aa7.19□□□□□ -1.26
CD44-233ENST00000531141 SERTM1A2A2V5 107 aa7.19□□□□□ -1.26
CD44-233ENST00000531141 SOBPA7XYQ1 873 aa7.19□□□□□ -1.26
CD44-233ENST00000531141 EML1O00423 815 aa7.19□□□□□ -1.26
CD44-233ENST00000531141 RHOQP17081 205 aa7.19□□□□□ -1.26
CD44-233ENST00000531141 POU4F2Q12837 409 aa7.19□□□□□ -1.26
CD44-233ENST00000531141 TBCELQ5QJ74 424 aa7.19□□□□□ -1.26
CD44-233ENST00000531141 ZDHHC1Q8WTX9 485 aa7.19□□□□□ -1.26
CD44-233ENST00000531141 TIMMDC1Q9NPL8 285 aa7.19□□□□□ -1.26
CD44-233ENST00000531141 ZDHHC3Q9NYG2 299 aa7.19□□□□□ -1.26
CD44-233ENST00000531141 SLAIN2Q9P270 581 aa7.19□□□□□ -1.26
CD44-233ENST00000531141 ATAD2Q6PL18 1390 aa7.19□□□□□ -1.26
CD44-233ENST00000531141 LGR5O75473 907 aa7.18□□□□□ -1.26
CD44-233ENST00000531141 C1orf216Q8TAB5 229 aa7.18□□□□□ -1.26
CD44-233ENST00000531141 PRIMPOLQ96LW4 560 aa7.18□□□□□ -1.26
CD44-233ENST00000531141 C2orf49Q9BVC5 232 aaPredicted RBP7.18□□□□□ -1.26
CD44-233ENST00000531141 TRAIPQ9BWF2 469 aa7.18□□□□□ -1.26
CD44-233ENST00000531141 ZNF232Q9UNY5 417 aa7.18□□□□□ -1.26
CD44-233ENST00000531141 DYRK1BQ9Y463 629 aa7.18□□□□□ -1.26
CD44-233ENST00000531141 NOS2P35228 1153 aa7.17□□□□□ -1.26
CD44-233ENST00000531141 PTSQ03393 145 aa7.17□□□□□ -1.26
CD44-233ENST00000531141 FKBP5Q13451 457 aaPredicted RBP7.17□□□□□ -1.26
CD44-233ENST00000531141 L3MBTL2Q969R5 705 aa7.17□□□□□ -1.26
CD44-233ENST00000531141 COL26A1Q96A83 441 aa7.17□□□□□ -1.26
CD44-233ENST00000531141 VTI1AQ96AJ9 217 aa7.17□□□□□ -1.26
CD44-233ENST00000531141 SENP3-EIF4A1A0A087X0R7 540 aa7.16□□□□□ -1.26
CD44-233ENST00000531141 CARNS1A5YM72 827 aa7.16□□□□□ -1.26
CD44-233ENST00000531141 PTCD1O75127 700 aaKnown RBP7.16□□□□□ -1.26
CD44-233ENST00000531141 TATP17735 454 aaPredicted RBP7.16□□□□□ -1.26
CD44-233ENST00000531141 SSFA2P28290 1259 aa7.16□□□□□ -1.26
CD44-233ENST00000531141 PHKA2P46019 1235 aa7.16□□□□□ -1.26
CD44-233ENST00000531141 CHMP7Q8WUX9 453 aaPredicted RBP7.16□□□□□ -1.26
CD44-233ENST00000531141 GPC6Q9Y625 555 aaPredicted RBP7.16□□□□□ -1.26
CD44-233ENST00000531141 SLC35F4A4IF30 521 aa7.15□□□□□ -1.26
CD44-233ENST00000531141 ATP4AP20648 1035 aa7.15□□□□□ -1.26
CD44-233ENST00000531141 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.15□□□□□ -1.26
CD44-233ENST00000531141 STK17AQ9UEE5 414 aa7.15□□□□□ -1.26
CD44-233ENST00000531141 BRD1O95696 1058 aa7.14□□□□□ -1.27
CD44-233ENST00000531141 PDIA4P13667 645 aaKnown RBP7.14□□□□□ -1.27
CD44-233ENST00000531141 SH3PXD2AQ5TCZ1 1133 aa7.14□□□□□ -1.27
CD44-233ENST00000531141 C1orf53Q5VUE5 145 aa7.14□□□□□ -1.27
CD44-233ENST00000531141 CCDC155Q8N6L0 562 aa7.14□□□□□ -1.27
CD44-233ENST00000531141 MTMR7Q9Y216 660 aa7.14□□□□□ -1.27
CD44-233ENST00000531141 PARP3Q9Y6F1 533 aa7.14□□□□□ -1.27
CD44-233ENST00000531141 WFS1O76024 890 aa7.13□□□□□ -1.27
CD44-233ENST00000531141 F11P03951 625 aa7.13□□□□□ -1.27
CD44-233ENST00000531141 MSX1P28360 303 aa7.13□□□□□ -1.27
CD44-233ENST00000531141 TXLNAP40222 546 aa7.13□□□□□ -1.27
CD44-233ENST00000531141 RTN1Q16799 776 aa7.13□□□□□ -1.27
CD44-233ENST00000531141 PHLDB3Q6NSJ2 640 aa7.13□□□□□ -1.27
CD44-233ENST00000531141 AIDAQ96BJ3 306 aa7.13□□□□□ -1.27
CD44-233ENST00000531141 MKNK1Q9BUB5 465 aa7.13□□□□□ -1.27
CD44-233ENST00000531141 PHACTR1Q9C0D0 580 aa7.13□□□□□ -1.27
CD44-233ENST00000531141 LBRQ14739 615 aaKnown RBP7.12□□□□□ -1.27
CD44-233ENST00000531141 HIF1AQ16665 826 aa7.12□□□□□ -1.27
CD44-233ENST00000531141 PGBD3Q8N328 593 aa7.12□□□□□ -1.27
CD44-233ENST00000531141 RHPN1Q8TCX5 695 aa7.12□□□□□ -1.27
CD44-233ENST00000531141 MYO19Q96H55 970 aa7.12□□□□□ -1.27
CD44-233ENST00000531141 CRISPLD1Q9H336 500 aa7.12□□□□□ -1.27
CD44-233ENST00000531141 GPAMQ9HCL2 828 aa7.12□□□□□ -1.27
CD44-233ENST00000531141 PATL2C9JE40 543 aaKnown RBP7.11□□□□□ -1.27
CD44-233ENST00000531141 H7C1W4 665 aa7.11□□□□□ -1.27
CD44-233ENST00000531141 ITGA6P23229 1130 aa7.11□□□□□ -1.27
CD44-233ENST00000531141 BICDL1Q6ZP65 573 aa7.11□□□□□ -1.27
CD44-233ENST00000531141 NPAS3Q8IXF0 933 aa7.11□□□□□ -1.27
CD44-233ENST00000531141 ALDH16A1Q8IZ83 802 aa7.11□□□□□ -1.27
CD44-233ENST00000531141 GMCL1Q96IK5 515 aa7.11□□□□□ -1.27
CD44-233ENST00000531141 NGLY1Q96IV0 654 aa7.11□□□□□ -1.27
CD44-233ENST00000531141 GAS2L1Q99501 681 aaPredicted RBP7.11□□□□□ -1.27
CD44-233ENST00000531141 QTRT2Q9H974 415 aaKnown RBP7.11□□□□□ -1.27
CD44-233ENST00000531141 PPFIA3O75145 1194 aa7.1□□□□□ -1.27
CD44-233ENST00000531141 KCNA1Q09470 495 aa7.1□□□□□ -1.27
CD44-233ENST00000531141 EFHC2Q5JST6 749 aa7.1□□□□□ -1.27
CD44-233ENST00000531141 RIPOR1Q6ZS17 1223 aa7.1□□□□□ -1.27
CD44-233ENST00000531141 NXF1Q9UBU9 619 aaKnown RBP7.1□□□□□ -1.27
CD44-233ENST00000531141 WIPF1O43516 503 aa7.09□□□□□ -1.27
CD44-233ENST00000531141 ARSJQ5FYB0 599 aaPredicted RBP7.09□□□□□ -1.27
CD44-233ENST00000531141 C16orf46Q6P387 395 aa7.09□□□□□ -1.27
CD44-233ENST00000531141 NLRP8Q86W28 1048 aa7.09□□□□□ -1.27
CD44-233ENST00000531141 TRIM22Q8IYM9 498 aa7.09□□□□□ -1.27
CD44-233ENST00000531141 ZNF837Q96EG3 531 aaPredicted RBP7.09□□□□□ -1.27
CD44-233ENST00000531141 NUCKS1Q9H1E3 243 aaKnown RBP7.09□□□□□ -1.27
CD44-233ENST00000531141 RUBCNLQ9H714 662 aa7.09□□□□□ -1.27
CD44-233ENST00000531141 HCN4Q9Y3Q4 1203 aa7.09□□□□□ -1.27
CD44-233ENST00000531141 H3BM21 787 aa7.08□□□□□ -1.28
CD44-233ENST00000531141 ARID4AP29374 1257 aaPredicted RBP7.08□□□□□ -1.28
CD44-233ENST00000531141 INSM1Q01101 510 aaPredicted RBP7.08□□□□□ -1.28
CD44-233ENST00000531141 KCTD17Q8N5Z5 321 aa7.08□□□□□ -1.28
CD44-233ENST00000531141 ZIC5Q96T25 663 aa7.08□□□□□ -1.28
CD44-233ENST00000531141 GNEQ9Y223 722 aaKnown RBP7.08□□□□□ -1.28
CD44-233ENST00000531141 A0A1W2PNR3 127 aa7.07□□□□□ -1.28
CD44-233ENST00000531141 NFX1Q12986 1120 aaKnown RBP7.07□□□□□ -1.28
CD44-233ENST00000531141 SAMD5Q5TGI4 173 aa7.07□□□□□ -1.28
CD44-233ENST00000531141 IER5Q5VY09 327 aa7.07□□□□□ -1.28
CD44-233ENST00000531141 FIGNL1Q6PIW4 674 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms