RNA–Protein interactions for RNA: ENST00000530567.1

CAPN1-220, Transcript of calpain 1, humanhuman

TSL 2

Gene CAPN1, Length 1,415 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-220ENST00000530567 HMGB2P26583 209 aaKnown RBP27.74■■■□□ 2.03
CAPN1-220ENST00000530567 INTS5Q6P9B9 1019 aaKnown RBP27.74■■■□□ 2.03
CAPN1-220ENST00000530567 TEX13AQ9BXU3 409 aaPredicted RBP27.74■■■□□ 2.03
CAPN1-220ENST00000530567 R3HDM1Q15032 1099 aaKnown RBP27.72■■■□□ 2.03
CAPN1-220ENST00000530567 AK7Q96M32 723 aa27.72■■■□□ 2.03
CAPN1-220ENST00000530567 STARD3NLO95772 234 aa27.71■■■□□ 2.03
CAPN1-220ENST00000530567 GOLGA2Q08379 1002 aa27.71■■■□□ 2.03
CAPN1-220ENST00000530567 CCDC87Q9NVE4 849 aa27.71■■■□□ 2.03
CAPN1-220ENST00000530567 GNPATO15228 680 aa27.7■■■□□ 2.03
CAPN1-220ENST00000530567 ZBTB1Q9Y2K1 713 aa27.7■■■□□ 2.03
CAPN1-220ENST00000530567 PNPLA7Q6ZV29 1317 aa27.7■■■□□ 2.02
CAPN1-220ENST00000530567 CASZ1Q86V15 1759 aa27.69■■■□□ 2.02
CAPN1-220ENST00000530567 PSDA5PKW4 1024 aaPredicted RBP27.69■■■□□ 2.02
CAPN1-220ENST00000530567 SMIM5Q71RC9 77 aa27.69■■■□□ 2.02
CAPN1-220ENST00000530567 TFCP2L1Q9NZI6 479 aa27.69■■■□□ 2.02
CAPN1-220ENST00000530567 C8orf58Q8NAV2 365 aa27.68■■■□□ 2.02
CAPN1-220ENST00000530567 CDCA7LQ96GN5 454 aa27.68■■■□□ 2.02
CAPN1-220ENST00000530567 MYH16Q9H6N6 1097 aa27.67■■■□□ 2.02
CAPN1-220ENST00000530567 RPS6KA4O75676 772 aa27.67■■■□□ 2.02
CAPN1-220ENST00000530567 A1BGP04217 495 aa27.67■■■□□ 2.02
CAPN1-220ENST00000530567 SLFN5Q08AF3 891 aa27.67■■■□□ 2.02
CAPN1-220ENST00000530567 DUSP27Q5VZP5 1158 aa27.67■■■□□ 2.02
CAPN1-220ENST00000530567 PDGFDQ9GZP0 370 aaPredicted RBP27.67■■■□□ 2.02
CAPN1-220ENST00000530567 E9PSI1 815 aa27.66■■■□□ 2.02
CAPN1-220ENST00000530567 HOXB7P09629 217 aa27.66■■■□□ 2.02
CAPN1-220ENST00000530567 TSPYL6Q8N831 410 aa27.66■■■□□ 2.02
CAPN1-220ENST00000530567 SOS1Q07889 1333 aaPredicted RBP27.65■■■□□ 2.02
CAPN1-220ENST00000530567 ZBED9Q6R2W3 1325 aa27.65■■■□□ 2.02
CAPN1-220ENST00000530567 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP27.65■■■□□ 2.02
CAPN1-220ENST00000530567 SSFA2P28290 1259 aa27.65■■■□□ 2.02
CAPN1-220ENST00000530567 RTCBQ9Y3I0 505 aaKnown RBP27.65■■■□□ 2.02
CAPN1-220ENST00000530567 C4AP0C0L4 1744 aa27.64■■■□□ 2.02
CAPN1-220ENST00000530567 NBPF26B4DH59 902 aa27.64■■■□□ 2.02
CAPN1-220ENST00000530567 NBPF10Q6P3W6 841 aaKnown RBP27.64■■■□□ 2.02
CAPN1-220ENST00000530567 TRMT2AQ8IZ69 625 aaKnown RBP27.64■■■□□ 2.02
CAPN1-220ENST00000530567 NBPF15Q8N660 670 aa27.64■■■□□ 2.02
CAPN1-220ENST00000530567 PHF14O94880 888 aa27.63■■■□□ 2.01
CAPN1-220ENST00000530567 PIP4K2AP48426 406 aaPredicted RBP27.63■■■□□ 2.01
CAPN1-220ENST00000530567 COL23A1Q86Y22 540 aaPredicted RBP27.63■■■□□ 2.01
CAPN1-220ENST00000530567 ELL2O00472 640 aaPredicted RBP27.62■■■□□ 2.01
CAPN1-220ENST00000530567 CANXP27824 592 aaKnown RBP27.62■■■□□ 2.01
CAPN1-220ENST00000530567 EXOSC9Q06265 439 aaKnown RBP27.61■■■□□ 2.01
CAPN1-220ENST00000530567 EIF2S2P20042 333 aaKnown RBP27.6■■■□□ 2.01
CAPN1-220ENST00000530567 EIF5P55010 431 aaKnown RBP27.6■■■□□ 2.01
CAPN1-220ENST00000530567 COL15A1P39059 1388 aa27.59■■■□□ 2.01
CAPN1-220ENST00000530567 ERBB4Q15303 1308 aa27.59■■■□□ 2.01
CAPN1-220ENST00000530567 ADRA2BP18089 450 aa27.59■■■□□ 2.01
CAPN1-220ENST00000530567 IL6STP40189 918 aaPredicted RBP27.59■■■□□ 2.01
CAPN1-220ENST00000530567 PDIA6Q15084 440 aa27.59■■■□□ 2.01
CAPN1-220ENST00000530567 FLAD1Q8NFF5 587 aa27.59■■■□□ 2.01
CAPN1-220ENST00000530567 HDGFL1Q5TGJ6 251 aa27.58■■■□□ 2.01
CAPN1-220ENST00000530567 NECTIN2Q92692 538 aa27.58■■■□□ 2.01
CAPN1-220ENST00000530567 ARHGEF1Q92888 912 aaKnown RBP27.58■■■□□ 2.01
CAPN1-220ENST00000530567 TWISTNBQ3B726 338 aaPredicted RBP27.58■■■□□ 2
CAPN1-220ENST00000530567 LRP10Q7Z4F1 713 aa27.58■■■□□ 2
CAPN1-220ENST00000530567 PROSER3Q2NL68 480 aa27.57■■■□□ 2
CAPN1-220ENST00000530567 TRAPPC3LQ5T215 181 aa27.57■■■□□ 2
CAPN1-220ENST00000530567 VAMP4O75379 141 aa27.55■■■□□ 2
CAPN1-220ENST00000530567 CHPF2Q9P2E5 772 aa27.54■■■□□ 2
CAPN1-220ENST00000530567 ANXA1P04083 346 aa27.53■■■□□ 2
CAPN1-220ENST00000530567 ZNF330Q9Y3S2 320 aaPredicted RBP27.53■■■□□ 2
CAPN1-220ENST00000530567 USP42Q9H9J4 1324 aaKnown RBP27.53■■■□□ 2
CAPN1-220ENST00000530567 MYL6BP14649 208 aa27.52■■■□□ 2
CAPN1-220ENST00000530567 DDX21Q9NR30 783 aaKnown RBP eCLIP27.52■■■□□ 2
CAPN1-220ENST00000530567 SCN7AQ01118 1682 aa27.52■■■□□ 2
CAPN1-220ENST00000530567 COL24A1Q17RW2 1714 aa27.52■■■□□ 2
CAPN1-220ENST00000530567 MSH5O43196 834 aa27.51■■□□□ 1.99
CAPN1-220ENST00000530567 RFC4P35249 363 aa27.51■■□□□ 1.99
CAPN1-220ENST00000530567 SRP68Q9UHB9 627 aaKnown RBP27.51■■□□□ 1.99
CAPN1-220ENST00000530567 BCORQ6W2J9 1755 aa27.51■■□□□ 1.99
CAPN1-220ENST00000530567 SLC16A10Q8TF71 515 aa27.5■■□□□ 1.99
CAPN1-220ENST00000530567 ZBTB7AO95365 584 aa27.5■■□□□ 1.99
CAPN1-220ENST00000530567 CCDC30Q5VVM6 783 aa27.5■■□□□ 1.99
CAPN1-220ENST00000530567 DBF4Q9UBU7 674 aaPredicted RBP27.5■■□□□ 1.99
CAPN1-220ENST00000530567 A0A087WZG4 1122 aa27.49■■□□□ 1.99
CAPN1-220ENST00000530567 NARFQ9UHQ1 456 aa27.49■■□□□ 1.99
CAPN1-220ENST00000530567 GYS1P13807 737 aa27.48■■□□□ 1.99
CAPN1-220ENST00000530567 MTFR1LQ9H019 292 aa27.48■■□□□ 1.99
CAPN1-220ENST00000530567 TBC1D2BQ9UPU7 963 aa27.48■■□□□ 1.99
CAPN1-220ENST00000530567 TCERG1O14776 1098 aaKnown RBP27.47■■□□□ 1.99
CAPN1-220ENST00000530567 CAMTA2O94983 1202 aa27.47■■□□□ 1.99
CAPN1-220ENST00000530567 DZIP3Q86Y13 1208 aaKnown RBP27.47■■□□□ 1.99
CAPN1-220ENST00000530567 BCL2L12Q9HB09 334 aa27.47■■□□□ 1.99
CAPN1-220ENST00000530567 USPL1Q5W0Q7 1092 aa27.46■■□□□ 1.99
CAPN1-220ENST00000530567 TTLL7Q6ZT98 887 aa27.46■■□□□ 1.99
CAPN1-220ENST00000530567 YTHDC1Q96MU7 727 aaKnown RBP27.46■■□□□ 1.99
CAPN1-220ENST00000530567 MSL1Q68DK7 614 aa27.45■■□□□ 1.98
CAPN1-220ENST00000530567 CHMP4AQ9BY43 222 aa27.45■■□□□ 1.98
CAPN1-220ENST00000530567 XAGE3Q8WTP9 111 aa27.44■■□□□ 1.98
CAPN1-220ENST00000530567 HYPKQ9NX55 129 aa27.44■■□□□ 1.98
CAPN1-220ENST00000530567 ZPR1O75312 459 aa27.43■■□□□ 1.98
CAPN1-220ENST00000530567 NPM2Q86SE8 214 aaKnown RBP27.43■■□□□ 1.98
CAPN1-220ENST00000530567 FKBP8Q14318 412 aa27.42■■□□□ 1.98
CAPN1-220ENST00000530567 COPS6Q7L5N1 327 aa27.42■■□□□ 1.98
CAPN1-220ENST00000530567 SGIP1Q9BQI5 828 aa27.42■■□□□ 1.98
CAPN1-220ENST00000530567 ATF5Q9Y2D1 282 aaPredicted RBP27.42■■□□□ 1.98
CAPN1-220ENST00000530567 CACNA1FO60840 1977 aa27.42■■□□□ 1.98
CAPN1-220ENST00000530567 PTGER2P43116 358 aa27.41■■□□□ 1.98
CAPN1-220ENST00000530567 STK31Q9BXU1 1019 aa27.41■■□□□ 1.98
CAPN1-220ENST00000530567 PHAXQ9H814 394 aaKnown RBP27.41■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms