RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-216	ENST00000525293	LBR	Q14739	615 aa	Known RBP	5.01	□□□□□ -1.61
CD44-216	ENST00000525293	NBPF1	Q3BBV0	1214 aa		5.01	□□□□□ -1.61
CD44-216	ENST00000525293	ARSJ	Q5FYB0	599 aa	Predicted RBP	5.01	□□□□□ -1.61
CD44-216	ENST00000525293	SLC9A9	Q8IVB4	645 aa		5.01	□□□□□ -1.61
CD44-216	ENST00000525293	LARGE2	Q8N3Y3	721 aa		5.01	□□□□□ -1.61
CD44-216	ENST00000525293	CFHR5	Q9BXR6	569 aa		5.01	□□□□□ -1.61
CD44-216	ENST00000525293	CRISPLD1	Q9H336	500 aa		5.01	□□□□□ -1.61
CD44-216	ENST00000525293	RBM19	Q9Y4C8	960 aa	Known RBP	5.01	□□□□□ -1.61
CD44-216	ENST00000525293	BNIP3L	O60238	219 aa		5	□□□□□ -1.61
CD44-216	ENST00000525293	TAT	P17735	454 aa	Predicted RBP	5	□□□□□ -1.61
CD44-216	ENST00000525293	NOS2	P35228	1153 aa		5	□□□□□ -1.61
CD44-216	ENST00000525293	TXLNA	P40222	546 aa		5	□□□□□ -1.61
CD44-216	ENST00000525293	FOXK2	Q01167	660 aa		5	□□□□□ -1.61
CD44-216	ENST00000525293	TEAD4	Q15561	434 aa		5	□□□□□ -1.61
CD44-216	ENST00000525293	LARP1	Q6PKG0	1096 aa	Known RBP	5	□□□□□ -1.61
CD44-216	ENST00000525293	SIX5	Q8N196	739 aa		5	□□□□□ -1.61
CD44-216	ENST00000525293	C1orf216	Q8TAB5	229 aa		5	□□□□□ -1.61
CD44-216	ENST00000525293	ZDHHC1	Q8WTX9	485 aa		5	□□□□□ -1.61
CD44-216	ENST00000525293	L3MBTL2	Q969R5	705 aa		5	□□□□□ -1.61
CD44-216	ENST00000525293	ABHD17A	Q96GS6	310 aa		5	□□□□□ -1.61
CD44-216	ENST00000525293	ZNF232	Q9UNY5	417 aa		5	□□□□□ -1.61
CD44-216	ENST00000525293	ADAMTS8	Q9UP79	889 aa		5	□□□□□ -1.61
CD44-216	ENST00000525293	PHF24	Q9UPV7	400 aa		5	□□□□□ -1.61
CD44-216	ENST00000525293		A0A1W2PNR3	127 aa		4.99	□□□□□ -1.61
CD44-216	ENST00000525293	DKK1	O94907	266 aa		4.99	□□□□□ -1.61
CD44-216	ENST00000525293	CELA2B	P08218	269 aa	Predicted RBP	4.99	□□□□□ -1.61
CD44-216	ENST00000525293	KANK4	Q5T7N3	995 aa	Predicted RBP	4.99	□□□□□ -1.61
CD44-216	ENST00000525293	BICDL1	Q6ZP65	573 aa		4.99	□□□□□ -1.61
CD44-216	ENST00000525293	TSEN2	Q8NCE0	465 aa	Known RBP	4.99	□□□□□ -1.61
CD44-216	ENST00000525293	ZIC5	Q96T25	663 aa		4.99	□□□□□ -1.61
CD44-216	ENST00000525293	ZCCHC2	Q9C0B9	1178 aa	Known RBP	4.99	□□□□□ -1.61
CD44-216	ENST00000525293	ZMYND15	Q9H091	742 aa		4.99	□□□□□ -1.61
CD44-216	ENST00000525293	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	4.99	□□□□□ -1.61
CD44-216	ENST00000525293	VRTN	Q9H8Y1	702 aa		4.99	□□□□□ -1.61
CD44-216	ENST00000525293	ZDHHC3	Q9NYG2	299 aa		4.99	□□□□□ -1.61
CD44-216	ENST00000525293	NSFL1C	Q9UNZ2	370 aa	Known RBP	4.99	□□□□□ -1.61
CD44-216	ENST00000525293	GTF3C3	Q9Y5Q9	886 aa		4.99	□□□□□ -1.61
CD44-216	ENST00000525293	SERTM1	A2A2V5	107 aa		4.98	□□□□□ -1.61
CD44-216	ENST00000525293		M0R2N6	131 aa		4.98	□□□□□ -1.61
CD44-216	ENST00000525293	ARHGEF15	O94989	841 aa		4.98	□□□□□ -1.61
CD44-216	ENST00000525293	RFX1	P22670	979 aa		4.98	□□□□□ -1.61
CD44-216	ENST00000525293	SEC13	P55735	322 aa		4.98	□□□□□ -1.61
CD44-216	ENST00000525293	MAP3K10	Q02779	954 aa		4.98	□□□□□ -1.61
CD44-216	ENST00000525293	PTK7	Q13308	1070 aa		4.98	□□□□□ -1.61
CD44-216	ENST00000525293	CRTC2	Q53ET0	693 aa	Predicted RBP	4.98	□□□□□ -1.61
CD44-216	ENST00000525293	SH3PXD2A	Q5TCZ1	1133 aa		4.98	□□□□□ -1.61
CD44-216	ENST00000525293	FIGNL1	Q6PIW4	674 aa		4.98	□□□□□ -1.61
CD44-216	ENST00000525293	NLRP8	Q86W28	1048 aa		4.98	□□□□□ -1.61
CD44-216	ENST00000525293	ACD	Q96AP0	544 aa		4.98	□□□□□ -1.61
CD44-216	ENST00000525293	NDFIP2	Q9NV92	336 aa		4.98	□□□□□ -1.61
CD44-216	ENST00000525293	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	4.98	□□□□□ -1.61
CD44-216	ENST00000525293	PCDHGC4	Q9Y5F7	938 aa		4.98	□□□□□ -1.61
CD44-216	ENST00000525293	GJA3	Q9Y6H8	435 aa		4.98	□□□□□ -1.61
CD44-216	ENST00000525293	ATXN7	O15265	892 aa	Predicted RBP	4.97	□□□□□ -1.61
CD44-216	ENST00000525293	LGR5	O75473	907 aa		4.97	□□□□□ -1.61
CD44-216	ENST00000525293	FGFR3	P22607	806 aa		4.97	□□□□□ -1.61
CD44-216	ENST00000525293	MAP2K3	P46734	347 aa		4.97	□□□□□ -1.61
CD44-216	ENST00000525293	CTBS	Q01459	385 aa		4.97	□□□□□ -1.61
CD44-216	ENST00000525293	DPYD	Q12882	1025 aa		4.97	□□□□□ -1.61
CD44-216	ENST00000525293	CDCA8	Q53HL2	280 aa		4.97	□□□□□ -1.61
CD44-216	ENST00000525293	CFAP70	Q5T0N1	1121 aa		4.97	□□□□□ -1.61
CD44-216	ENST00000525293	KLRG1	Q96E93	195 aa		4.97	□□□□□ -1.61
CD44-216	ENST00000525293	HINFP	Q9BQA5	517 aa		4.97	□□□□□ -1.61
CD44-216	ENST00000525293	HCN4	Q9Y3Q4	1203 aa		4.97	□□□□□ -1.61
CD44-216	ENST00000525293	ATAD2	Q6PL18	1390 aa		4.96	□□□□□ -1.62
CD44-216	ENST00000525293	DCDC2B	A2VCK2	349 aa		4.96	□□□□□ -1.62
CD44-216	ENST00000525293	FAM196B	A6NMK8	535 aa		4.96	□□□□□ -1.62
CD44-216	ENST00000525293	USP17L15	C9J2P7	530 aa		4.96	□□□□□ -1.62
CD44-216	ENST00000525293	USP17L10	C9JJH3	530 aa		4.96	□□□□□ -1.62
CD44-216	ENST00000525293	USP17L13	C9JLJ4	530 aa		4.96	□□□□□ -1.62
CD44-216	ENST00000525293	USP17L12	C9JPN9	530 aa		4.96	□□□□□ -1.62
CD44-216	ENST00000525293	USP17L11	C9JVI0	530 aa		4.96	□□□□□ -1.62
CD44-216	ENST00000525293	USP17L21	D6R901	530 aa		4.96	□□□□□ -1.62
CD44-216	ENST00000525293	USP17L18	D6R9N7	530 aa		4.96	□□□□□ -1.62
CD44-216	ENST00000525293	USP17L22	D6RA61	530 aa		4.96	□□□□□ -1.62
CD44-216	ENST00000525293	USP17L17	D6RBQ6	530 aa		4.96	□□□□□ -1.62
CD44-216	ENST00000525293	USP17L19	D6RCP7	530 aa		4.96	□□□□□ -1.62
CD44-216	ENST00000525293	USP17L20	D6RJB6	530 aa		4.96	□□□□□ -1.62
CD44-216	ENST00000525293	EML1	O00423	815 aa		4.96	□□□□□ -1.62
CD44-216	ENST00000525293	C2CD2L	O14523	706 aa		4.96	□□□□□ -1.62
CD44-216	ENST00000525293	KHNYN	O15037	678 aa	Known RBP	4.96	□□□□□ -1.62
CD44-216	ENST00000525293	C21orf2	O43822	256 aa		4.96	□□□□□ -1.62
CD44-216	ENST00000525293	BCR	P11274	1271 aa		4.96	□□□□□ -1.62
CD44-216	ENST00000525293	BMP4	P12644	408 aa		4.96	□□□□□ -1.62
CD44-216	ENST00000525293	GSK3A	P49840	483 aa		4.96	□□□□□ -1.62
CD44-216	ENST00000525293	MARS	P56192	900 aa	Known RBP	4.96	□□□□□ -1.62
CD44-216	ENST00000525293	PSMA6	P60900	246 aa	Known RBP	4.96	□□□□□ -1.62
CD44-216	ENST00000525293	USP17L24	Q0WX57	530 aa		4.96	□□□□□ -1.62
CD44-216	ENST00000525293	ANKMY2	Q8IV38	441 aa		4.96	□□□□□ -1.62
CD44-216	ENST00000525293	OXCT2	Q9BYC2	517 aa	Predicted RBP	4.96	□□□□□ -1.62
CD44-216	ENST00000525293	ENAM	Q9NRM1	1142 aa		4.96	□□□□□ -1.62
CD44-216	ENST00000525293	CHMP3	Q9Y3E7	222 aa		4.96	□□□□□ -1.62
CD44-216	ENST00000525293	PPP1R12B	O60237	982 aa	Predicted RBP	4.95	□□□□□ -1.62
CD44-216	ENST00000525293	MAPT	P10636	758 aa	Known RBP	4.95	□□□□□ -1.62
CD44-216	ENST00000525293	TNP2	Q05952	138 aa		4.95	□□□□□ -1.62
CD44-216	ENST00000525293	LRRC69	Q6ZNQ3	347 aa		4.95	□□□□□ -1.62
CD44-216	ENST00000525293	NEDD1	Q8NHV4	660 aa		4.95	□□□□□ -1.62
CD44-216	ENST00000525293	GAS2L2	Q8NHY3	880 aa		4.95	□□□□□ -1.62
CD44-216	ENST00000525293	CHMP7	Q8WUX9	453 aa	Predicted RBP	4.95	□□□□□ -1.62
CD44-216	ENST00000525293	C7orf43	Q8WVR3	580 aa		4.95	□□□□□ -1.62

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