RNA–Protein interactions for RNA: ENST00000522963.5

PVT1-215, Transcript of Pvt1 oncogene, humanhuman

TSL 4

Gene PVT1, Length 568 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-215ENST00000522963 AMIGO3Q86WK7 504 aa15.49■□□□□ 0.07
PVT1-215ENST00000522963 ZNF496Q96IT1 587 aaPredicted RBP15.49■□□□□ 0.07
PVT1-215ENST00000522963 MTFR1LQ9H019 292 aa15.49■□□□□ 0.07
PVT1-215ENST00000522963 MYH16Q9H6N6 1097 aa15.49■□□□□ 0.07
PVT1-215ENST00000522963 LRP5O75197 1615 aa15.49■□□□□ 0.07
PVT1-215ENST00000522963 UBR3Q6ZT12 1888 aa15.48■□□□□ 0.07
PVT1-215ENST00000522963 MYH14Q7Z406 1995 aaKnown RBP15.48■□□□□ 0.07
PVT1-215ENST00000522963 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.48■□□□□ 0.07
PVT1-215ENST00000522963 CRKLP46109 303 aaKnown RBP15.48■□□□□ 0.07
PVT1-215ENST00000522963 DUSP27Q5VZP5 1158 aa15.48■□□□□ 0.07
PVT1-215ENST00000522963 FLAD1Q8NFF5 587 aa15.48■□□□□ 0.07
PVT1-215ENST00000522963 RTCBQ9Y3I0 505 aaKnown RBP15.48■□□□□ 0.07
PVT1-215ENST00000522963 TJP1Q07157 1748 aa15.48■□□□□ 0.07
PVT1-215ENST00000522963 KCPQ6ZWJ8 1503 aa15.48■□□□□ 0.07
PVT1-215ENST00000522963 COL5A3P25940 1745 aaPredicted RBP15.47■□□□□ 0.07
PVT1-215ENST00000522963 FMNL2Q96PY5 1086 aa15.47■□□□□ 0.07
PVT1-215ENST00000522963 ZNF831Q5JPB2 1677 aa15.47■□□□□ 0.07
PVT1-215ENST00000522963 CNTNAP4Q9C0A0 1308 aa15.46■□□□□ 0.07
PVT1-215ENST00000522963 SSFA2P28290 1259 aa15.46■□□□□ 0.07
PVT1-215ENST00000522963 SLC16A10Q8TF71 515 aa15.46■□□□□ 0.07
PVT1-215ENST00000522963 UBR2Q8IWV8 1755 aa15.46■□□□□ 0.07
PVT1-215ENST00000522963 EIF4A1P60842 406 aaKnown RBP15.45■□□□□ 0.06
PVT1-215ENST00000522963 TRAPPC3LQ5T215 181 aa15.45■□□□□ 0.06
PVT1-215ENST00000522963 RC3H1Q5TC82 1133 aaKnown RBP15.45■□□□□ 0.06
PVT1-215ENST00000522963 KLHL34Q8N239 644 aa15.45■□□□□ 0.06
PVT1-215ENST00000522963 CCDC87Q9NVE4 849 aa15.45■□□□□ 0.06
PVT1-215ENST00000522963 HEG1Q9ULI3 1381 aa15.45■□□□□ 0.06
PVT1-215ENST00000522963 RPS6KA4O75676 772 aa15.44■□□□□ 0.06
PVT1-215ENST00000522963 CYP19A1P11511 503 aaPredicted RBP15.44■□□□□ 0.06
PVT1-215ENST00000522963 CANXP27824 592 aaKnown RBP15.44■□□□□ 0.06
PVT1-215ENST00000522963 POLD1P28340 1107 aa15.44■□□□□ 0.06
PVT1-215ENST00000522963 PTGER2P43116 358 aa15.44■□□□□ 0.06
PVT1-215ENST00000522963 EXOSC9Q06265 439 aaKnown RBP15.44■□□□□ 0.06
PVT1-215ENST00000522963 KRT24Q2M2I5 525 aa15.44■□□□□ 0.06
PVT1-215ENST00000522963 VSIG10Q8N0Z9 540 aa15.44■□□□□ 0.06
PVT1-215ENST00000522963 ZNF330Q9Y3S2 320 aaPredicted RBP15.44■□□□□ 0.06
PVT1-215ENST00000522963 STARD3NLO95772 234 aa15.43■□□□□ 0.06
PVT1-215ENST00000522963 RFC4P35249 363 aa15.43■□□□□ 0.06
PVT1-215ENST00000522963 INTS5Q6P9B9 1019 aaKnown RBP15.43■□□□□ 0.06
PVT1-215ENST00000522963 C8orf58Q8NAV2 365 aa15.43■□□□□ 0.06
PVT1-215ENST00000522963 PRAMEF22A3QJZ6 481 aa15.42■□□□□ 0.06
PVT1-215ENST00000522963 TSPYL6Q8N831 410 aa15.42■□□□□ 0.06
PVT1-215ENST00000522963 ARHGEF1Q92888 912 aaKnown RBP15.42■□□□□ 0.06
PVT1-215ENST00000522963 TEX13AQ9BXU3 409 aaPredicted RBP15.42■□□□□ 0.06
PVT1-215ENST00000522963 ZBTB1Q9Y2K1 713 aa15.42■□□□□ 0.06
PVT1-215ENST00000522963 ARXQ96QS3 562 aa15.41■□□□□ 0.06
PVT1-215ENST00000522963 USP16Q9Y5T5 823 aa15.41■□□□□ 0.06
PVT1-215ENST00000522963 KDM3BQ7LBC6 1761 aa15.41■□□□□ 0.06
PVT1-215ENST00000522963 CICQ96RK0 1608 aaPredicted RBP15.4■□□□□ 0.06
PVT1-215ENST00000522963 ELL2O00472 640 aaPredicted RBP15.4■□□□□ 0.06
PVT1-215ENST00000522963 GIGYF1O75420 1035 aaPredicted RBP15.4■□□□□ 0.06
PVT1-215ENST00000522963 A1BGP04217 495 aa15.4■□□□□ 0.06
PVT1-215ENST00000522963 SNRPA1P09661 255 aaKnown RBP15.4■□□□□ 0.06
PVT1-215ENST00000522963 ADRA2BP18089 450 aa15.4■□□□□ 0.06
PVT1-215ENST00000522963 PIP4K2AP48426 406 aaPredicted RBP15.4■□□□□ 0.06
PVT1-215ENST00000522963 SRP68Q9UHB9 627 aaKnown RBP15.4■□□□□ 0.06
PVT1-215ENST00000522963 NPM2Q86SE8 214 aaKnown RBP15.39■□□□□ 0.05
PVT1-215ENST00000522963 SGIP1Q9BQI5 828 aa15.39■□□□□ 0.05
PVT1-215ENST00000522963 VAMP4O75379 141 aa15.38■□□□□ 0.05
PVT1-215ENST00000522963 TWISTNBQ3B726 338 aaPredicted RBP15.38■□□□□ 0.05
PVT1-215ENST00000522963 SOS1Q07889 1333 aaPredicted RBP15.38■□□□□ 0.05
PVT1-215ENST00000522963 C4AP0C0L4 1744 aa15.37■□□□□ 0.05
PVT1-215ENST00000522963 ZPR1O75312 459 aa15.37■□□□□ 0.05
PVT1-215ENST00000522963 HOXB7P09629 217 aa15.37■□□□□ 0.05
PVT1-215ENST00000522963 FHDC1Q9C0D6 1143 aaPredicted RBP15.37■□□□□ 0.05
PVT1-215ENST00000522963 COL15A1P39059 1388 aa15.36■□□□□ 0.05
PVT1-215ENST00000522963 USPL1Q5W0Q7 1092 aa15.36■□□□□ 0.05
PVT1-215ENST00000522963 MMP10P09238 476 aa15.35■□□□□ 0.05
PVT1-215ENST00000522963 CT47B1P0C2W7 299 aaPredicted RBP15.35■□□□□ 0.05
PVT1-215ENST00000522963 GYS1P13807 737 aa15.35■□□□□ 0.05
PVT1-215ENST00000522963 NLGN1Q8N2Q7 840 aa15.35■□□□□ 0.05
PVT1-215ENST00000522963 USP42Q9H9J4 1324 aaKnown RBP15.35■□□□□ 0.05
PVT1-215ENST00000522963 A0A087WZG4 1122 aa15.34■□□□□ 0.05
PVT1-215ENST00000522963 EIF2S2P20042 333 aaKnown RBP15.34■□□□□ 0.05
PVT1-215ENST00000522963 NECTIN2Q92692 538 aa15.34■□□□□ 0.05
PVT1-215ENST00000522963 TBC1D2BQ9UPU7 963 aa15.34■□□□□ 0.05
PVT1-215ENST00000522963 COL24A1Q17RW2 1714 aa15.34■□□□□ 0.05
PVT1-215ENST00000522963 EIF5P55010 431 aaKnown RBP15.33■□□□□ 0.04
PVT1-215ENST00000522963 FKBP8Q14318 412 aa15.33■□□□□ 0.04
PVT1-215ENST00000522963 HDGFL1Q5TGJ6 251 aa15.33■□□□□ 0.04
PVT1-215ENST00000522963 SYT17Q9BSW7 474 aa15.33■□□□□ 0.04
PVT1-215ENST00000522963 NARFQ9UHQ1 456 aa15.33■□□□□ 0.04
PVT1-215ENST00000522963 LAMB4A4D0S4 1761 aa15.32■□□□□ 0.04
PVT1-215ENST00000522963 TCERG1O14776 1098 aaKnown RBP15.32■□□□□ 0.04
PVT1-215ENST00000522963 IL6STP40189 918 aaPredicted RBP15.32■□□□□ 0.04
PVT1-215ENST00000522963 RARSP54136 660 aaKnown RBP15.32■□□□□ 0.04
PVT1-215ENST00000522963 BICDL1Q6ZP65 573 aa15.32■□□□□ 0.04
PVT1-215ENST00000522963 PARP3Q9Y6F1 533 aa15.32■□□□□ 0.04
PVT1-215ENST00000522963 NBPF26B4DH59 902 aa15.31■□□□□ 0.04
PVT1-215ENST00000522963 MYL6BP14649 208 aa15.31■□□□□ 0.04
PVT1-215ENST00000522963 CCDC30Q5VVM6 783 aa15.31■□□□□ 0.04
PVT1-215ENST00000522963 NBPF10Q6P3W6 841 aaKnown RBP15.31■□□□□ 0.04
PVT1-215ENST00000522963 DZIP3Q86Y13 1208 aaKnown RBP15.31■□□□□ 0.04
PVT1-215ENST00000522963 NBPF15Q8N660 670 aa15.31■□□□□ 0.04
PVT1-215ENST00000522963 SSH1Q8WYL5 1049 aa15.31■□□□□ 0.04
PVT1-215ENST00000522963 ZNF428Q96B54 188 aa15.31■□□□□ 0.04
PVT1-215ENST00000522963 PELP1Q8IZL8 1130 aaKnown RBP15.3■□□□□ 0.04
PVT1-215ENST00000522963 RCAN3Q9UKA8 241 aa15.3■□□□□ 0.04
PVT1-215ENST00000522963 DCAF8L1A6NGE4 600 aa15.29■□□□□ 0.04
PVT1-215ENST00000522963 CENPBP07199 599 aaPredicted RBP15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms