RNA–Protein interactions for RNA: ENST00000521944.1

TRAPPC9-212, Transcript of trafficking protein particle complex 9, humanhuman

TSL 3

Gene TRAPPC9, Length 492 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC9-212ENST00000521944 ITGB4P16144 1822 aa12.77□□□□□ -0.37
TRAPPC9-212ENST00000521944 VEGFAP15692 232 aaPredicted RBP12.77□□□□□ -0.37
TRAPPC9-212ENST00000521944 MKRN1Q9UHC7 482 aaKnown RBP12.77□□□□□ -0.37
TRAPPC9-212ENST00000521944 CGNL1Q0VF96 1302 aa12.77□□□□□ -0.37
TRAPPC9-212ENST00000521944 TMF1P82094 1093 aa12.76□□□□□ -0.37
TRAPPC9-212ENST00000521944 NLGN1Q8N2Q7 840 aa12.76□□□□□ -0.37
TRAPPC9-212ENST00000521944 SLC39A7Q92504 469 aa12.76□□□□□ -0.37
TRAPPC9-212ENST00000521944 ABHD8Q96I13 439 aa12.76□□□□□ -0.37
TRAPPC9-212ENST00000521944 RTN4Q9NQC3 1192 aaKnown RBP12.76□□□□□ -0.37
TRAPPC9-212ENST00000521944 PIM2Q9P1W9 311 aa12.76□□□□□ -0.37
TRAPPC9-212ENST00000521944 ASAP1Q9ULH1 1129 aa12.76□□□□□ -0.37
TRAPPC9-212ENST00000521944 TRIM35Q9UPQ4 493 aa12.76□□□□□ -0.37
TRAPPC9-212ENST00000521944 GLTPD2A6NH11 291 aa12.75□□□□□ -0.37
TRAPPC9-212ENST00000521944 KDM6AO15550 1401 aaPredicted RBP12.75□□□□□ -0.37
TRAPPC9-212ENST00000521944 GYS1P13807 737 aa12.75□□□□□ -0.37
TRAPPC9-212ENST00000521944 DALRD3Q5D0E6 543 aaKnown RBP12.75□□□□□ -0.37
TRAPPC9-212ENST00000521944 EDC4Q6P2E9 1401 aaKnown RBP12.75□□□□□ -0.37
TRAPPC9-212ENST00000521944 ARHGEF1Q92888 912 aaKnown RBP12.75□□□□□ -0.37
TRAPPC9-212ENST00000521944 PCDH11XQ9BZA7 1347 aa12.74□□□□□ -0.37
TRAPPC9-212ENST00000521944 PCDH11YQ9BZA8 1340 aa12.74□□□□□ -0.37
TRAPPC9-212ENST00000521944 C7P10643 843 aa12.74□□□□□ -0.37
TRAPPC9-212ENST00000521944 CHRNA5P30532 468 aa12.74□□□□□ -0.37
TRAPPC9-212ENST00000521944 RGS19P49795 217 aa12.74□□□□□ -0.37
TRAPPC9-212ENST00000521944 RASSF7Q02833 373 aa12.74□□□□□ -0.37
TRAPPC9-212ENST00000521944 SLC4A9Q96Q91 983 aa12.74□□□□□ -0.37
TRAPPC9-212ENST00000521944 CCDC87Q9NVE4 849 aa12.74□□□□□ -0.37
TRAPPC9-212ENST00000521944 C4AP0C0L4 1744 aa12.74□□□□□ -0.37
TRAPPC9-212ENST00000521944 PDE4DIPQ5VU43 2346 aa12.73□□□□□ -0.37
TRAPPC9-212ENST00000521944 A0A1W2PP64 1363 aa12.73□□□□□ -0.37
TRAPPC9-212ENST00000521944 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.73□□□□□ -0.37
TRAPPC9-212ENST00000521944 AMPHP49418 695 aa12.73□□□□□ -0.37
TRAPPC9-212ENST00000521944 NKX1-1Q15270 411 aaPredicted RBP12.73□□□□□ -0.37
TRAPPC9-212ENST00000521944 TRAPPC3LQ5T215 181 aa12.73□□□□□ -0.37
TRAPPC9-212ENST00000521944 IER5LQ5T953 404 aa12.73□□□□□ -0.37
TRAPPC9-212ENST00000521944 RAPGEF4Q8WZA2 1011 aa12.73□□□□□ -0.37
TRAPPC9-212ENST00000521944 ZFP91Q96JP5 570 aaPredicted RBP12.73□□□□□ -0.37
TRAPPC9-212ENST00000521944 TNRC18O15417 2968 aaPredicted RBP12.73□□□□□ -0.37
TRAPPC9-212ENST00000521944 TATP17735 454 aaPredicted RBP12.72□□□□□ -0.37
TRAPPC9-212ENST00000521944 ATP6V1AP38606 617 aa12.72□□□□□ -0.37
TRAPPC9-212ENST00000521944 CTCFP49711 727 aaPredicted RBP12.72□□□□□ -0.37
TRAPPC9-212ENST00000521944 LBX1P52954 281 aa12.72□□□□□ -0.37
TRAPPC9-212ENST00000521944 TMC1Q8TDI8 760 aa12.72□□□□□ -0.37
TRAPPC9-212ENST00000521944 ZC3H4Q9UPT8 1303 aaKnown RBP12.71□□□□□ -0.37
TRAPPC9-212ENST00000521944 DDR1Q08345 913 aa12.71□□□□□ -0.37
TRAPPC9-212ENST00000521944 RRS1Q15050 365 aaKnown RBP12.71□□□□□ -0.37
TRAPPC9-212ENST00000521944 ATG3Q9NT62 314 aa12.71□□□□□ -0.37
TRAPPC9-212ENST00000521944 WBP1LQ9NX94 342 aa12.71□□□□□ -0.37
TRAPPC9-212ENST00000521944 CNTNAP1P78357 1384 aa12.7□□□□□ -0.38
TRAPPC9-212ENST00000521944 POTEJP0CG39 1038 aa12.7□□□□□ -0.38
TRAPPC9-212ENST00000521944 MLLT1Q03111 559 aaPredicted RBP12.7□□□□□ -0.38
TRAPPC9-212ENST00000521944 MKRN3Q13064 507 aaKnown RBP12.7□□□□□ -0.38
TRAPPC9-212ENST00000521944 HDGFL2Q7Z4V5 671 aaPredicted RBP12.7□□□□□ -0.38
TRAPPC9-212ENST00000521944 RTCBQ9Y3I0 505 aaKnown RBP12.7□□□□□ -0.38
TRAPPC9-212ENST00000521944 PARP3Q9Y6F1 533 aa12.7□□□□□ -0.38
TRAPPC9-212ENST00000521944 VEGFBP49765 207 aa12.69□□□□□ -0.38
TRAPPC9-212ENST00000521944 HSP90AB2PQ58FF8 381 aa12.69□□□□□ -0.38
TRAPPC9-212ENST00000521944 L3MBTL2Q969R5 705 aa12.69□□□□□ -0.38
TRAPPC9-212ENST00000521944 KDRP35968 1356 aa12.69□□□□□ -0.38
TRAPPC9-212ENST00000521944 STK25O00506 426 aa12.68□□□□□ -0.38
TRAPPC9-212ENST00000521944 HSPA8P11142 646 aaKnown RBP12.68□□□□□ -0.38
TRAPPC9-212ENST00000521944 LMNB1P20700 586 aa12.68□□□□□ -0.38
TRAPPC9-212ENST00000521944 METRNQ9UJH8 293 aa12.68□□□□□ -0.38
TRAPPC9-212ENST00000521944 MYH14Q7Z406 1995 aaKnown RBP12.67□□□□□ -0.38
TRAPPC9-212ENST00000521944 RPS6KA4O75676 772 aa12.67□□□□□ -0.38
TRAPPC9-212ENST00000521944 RC3H1Q5TC82 1133 aaKnown RBP12.67□□□□□ -0.38
TRAPPC9-212ENST00000521944 COG3Q96JB2 828 aa12.67□□□□□ -0.38
TRAPPC9-212ENST00000521944 RTL1A6NKG5 1358 aa12.67□□□□□ -0.38
TRAPPC9-212ENST00000521944 PASKQ96RG2 1323 aa12.66□□□□□ -0.38
TRAPPC9-212ENST00000521944 RFC4P35249 363 aa12.66□□□□□ -0.38
TRAPPC9-212ENST00000521944 TERF2IPQ9NYB0 399 aa12.66□□□□□ -0.38
TRAPPC9-212ENST00000521944 SRP68Q9UHB9 627 aaKnown RBP12.66□□□□□ -0.38
TRAPPC9-212ENST00000521944 NFKBIEO00221 500 aa12.65□□□□□ -0.38
TRAPPC9-212ENST00000521944 SEC24BO95487 1268 aa12.65□□□□□ -0.38
TRAPPC9-212ENST00000521944 TMOD3Q9NYL9 352 aa12.65□□□□□ -0.38
TRAPPC9-212ENST00000521944 STK24Q9Y6E0 443 aa12.65□□□□□ -0.38
TRAPPC9-212ENST00000521944 ROCK2O75116 1388 aaKnown RBP12.65□□□□□ -0.38
TRAPPC9-212ENST00000521944 CCDC88AQ3V6T2 1871 aa12.64□□□□□ -0.39
TRAPPC9-212ENST00000521944 CCDC85CA6NKD9 419 aa12.64□□□□□ -0.39
TRAPPC9-212ENST00000521944 POLRMTO00411 1230 aaKnown RBP12.64□□□□□ -0.39
TRAPPC9-212ENST00000521944 TM4SF1P30408 202 aa12.64□□□□□ -0.39
TRAPPC9-212ENST00000521944 AIDAQ96BJ3 306 aa12.64□□□□□ -0.39
TRAPPC9-212ENST00000521944 VIRMAQ69YN4 1812 aaKnown RBP12.64□□□□□ -0.39
TRAPPC9-212ENST00000521944 CNTNAP4Q9C0A0 1308 aa12.63□□□□□ -0.39
TRAPPC9-212ENST00000521944 INSRP06213 1382 aa12.63□□□□□ -0.39
TRAPPC9-212ENST00000521944 NCAPD2Q15021 1401 aa12.62□□□□□ -0.39
TRAPPC9-212ENST00000521944 ITGBL1O95965 494 aaPredicted RBP12.62□□□□□ -0.39
TRAPPC9-212ENST00000521944 FYB1O15117 783 aa12.61□□□□□ -0.39
TRAPPC9-212ENST00000521944 HS6ST3Q8IZP7 471 aa12.61□□□□□ -0.39
TRAPPC9-212ENST00000521944 COL5A3P25940 1745 aaPredicted RBP12.61□□□□□ -0.39
TRAPPC9-212ENST00000521944 TIAM2Q8IVF5 1701 aa12.61□□□□□ -0.39
TRAPPC9-212ENST00000521944 USP42Q9H9J4 1324 aaKnown RBP12.61□□□□□ -0.39
TRAPPC9-212ENST00000521944 PHKG2P15735 406 aa12.6□□□□□ -0.39
TRAPPC9-212ENST00000521944 PLCG2P16885 1265 aa12.6□□□□□ -0.39
TRAPPC9-212ENST00000521944 ZNF831Q5JPB2 1677 aa12.59□□□□□ -0.39
TRAPPC9-212ENST00000521944 DDNO94850 711 aaPredicted RBP12.59□□□□□ -0.39
TRAPPC9-212ENST00000521944 DPY19L2Q6NUT2 758 aa12.59□□□□□ -0.39
TRAPPC9-212ENST00000521944 PUS7Q96PZ0 661 aaKnown RBP12.59□□□□□ -0.39
TRAPPC9-212ENST00000521944 GGNBP2Q9H3C7 697 aa12.59□□□□□ -0.39
TRAPPC9-212ENST00000521944 SPG7Q9UQ90 795 aa12.59□□□□□ -0.39
TRAPPC9-212ENST00000521944 SMG6Q86US8 1419 aaKnown RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms