RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, human

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LIMCH1-222	ENST00000515847	SLC39A6	Q13433	755 aa		10.12	□□□□□ -0.79
LIMCH1-222	ENST00000515847	ZNF827	Q17R98	1081 aa		10.12	□□□□□ -0.79
LIMCH1-222	ENST00000515847	CHMP4A	Q9BY43	222 aa		10.12	□□□□□ -0.79
LIMCH1-222	ENST00000515847	BABAM1	Q9NWV8	329 aa		10.12	□□□□□ -0.79
LIMCH1-222	ENST00000515847	STK32B	Q9NY57	414 aa		10.12	□□□□□ -0.79
LIMCH1-222	ENST00000515847	RRP7A	Q9Y3A4	280 aa	Known RBP	10.12	□□□□□ -0.79
LIMCH1-222	ENST00000515847	C4B	P0C0L5	1744 aa		10.12	□□□□□ -0.79
LIMCH1-222	ENST00000515847	KCP	Q6ZWJ8	1503 aa		10.12	□□□□□ -0.79
LIMCH1-222	ENST00000515847	ZNF831	Q5JPB2	1677 aa		10.12	□□□□□ -0.79
LIMCH1-222	ENST00000515847	CASZ1	Q86V15	1759 aa		10.11	□□□□□ -0.79
LIMCH1-222	ENST00000515847	COL5A3	P25940	1745 aa	Predicted RBP	10.11	□□□□□ -0.79
LIMCH1-222	ENST00000515847	TJP1	Q07157	1748 aa		10.11	□□□□□ -0.79
LIMCH1-222	ENST00000515847	PTCD1	O75127	700 aa	Known RBP	10.11	□□□□□ -0.79
LIMCH1-222	ENST00000515847	SLC15A2	Q16348	729 aa		10.11	□□□□□ -0.79
LIMCH1-222	ENST00000515847	CCDC27	Q2M243	656 aa		10.11	□□□□□ -0.79
LIMCH1-222	ENST00000515847	SLC4A9	Q96Q91	983 aa		10.11	□□□□□ -0.79
LIMCH1-222	ENST00000515847	CIC	Q96RK0	1608 aa	Predicted RBP	10.11	□□□□□ -0.79
LIMCH1-222	ENST00000515847	QSER1	Q2KHR3	1735 aa		10.1	□□□□□ -0.79
LIMCH1-222	ENST00000515847	ATP6V1A	P38606	617 aa		10.1	□□□□□ -0.79
LIMCH1-222	ENST00000515847	ITPK1	Q13572	414 aa		10.1	□□□□□ -0.79
LIMCH1-222	ENST00000515847	LINC00116	Q8NCU8	138 aa		10.1	□□□□□ -0.79
LIMCH1-222	ENST00000515847	THUMPD2	Q9BTF0	503 aa	Known RBP	10.1	□□□□□ -0.79
LIMCH1-222	ENST00000515847	UBR3	Q6ZT12	1888 aa		10.09	□□□□□ -0.79
LIMCH1-222	ENST00000515847	BTBD11	A6QL63	1104 aa		10.09	□□□□□ -0.79
LIMCH1-222	ENST00000515847	APAF1	O14727	1248 aa		10.09	□□□□□ -0.79
LIMCH1-222	ENST00000515847	NEUROD2	Q15784	382 aa		10.09	□□□□□ -0.79
LIMCH1-222	ENST00000515847	MIER1	Q8N108	512 aa		10.09	□□□□□ -0.79
LIMCH1-222	ENST00000515847	KDM3B	Q7LBC6	1761 aa		10.09	□□□□□ -0.79
LIMCH1-222	ENST00000515847	IL16	Q14005	1332 aa		10.08	□□□□□ -0.8
LIMCH1-222	ENST00000515847	KCNQ3	O43525	872 aa		10.08	□□□□□ -0.8
LIMCH1-222	ENST00000515847	TAF7	Q15545	349 aa	Predicted RBP	10.08	□□□□□ -0.8
LIMCH1-222	ENST00000515847	ZNF790	Q6PG37	636 aa		10.08	□□□□□ -0.8
LIMCH1-222	ENST00000515847	VSIG10	Q8N0Z9	540 aa		10.08	□□□□□ -0.8
LIMCH1-222	ENST00000515847	FMNL2	Q96PY5	1086 aa		10.08	□□□□□ -0.8
LIMCH1-222	ENST00000515847	TEX13A	Q9BXU3	409 aa	Predicted RBP	10.08	□□□□□ -0.8
LIMCH1-222	ENST00000515847	PDGFD	Q9GZP0	370 aa	Predicted RBP	10.08	□□□□□ -0.8
LIMCH1-222	ENST00000515847	PNPLA7	Q6ZV29	1317 aa		10.07	□□□□□ -0.8
LIMCH1-222	ENST00000515847	MYH14	Q7Z406	1995 aa	Known RBP	10.07	□□□□□ -0.8
LIMCH1-222	ENST00000515847	SENP3-EIF4A1	A0A087X0R7	540 aa		10.07	□□□□□ -0.8
LIMCH1-222	ENST00000515847	GNAI1	P63096	354 aa		10.07	□□□□□ -0.8
LIMCH1-222	ENST00000515847	NPM2	Q86SE8	214 aa	Known RBP	10.07	□□□□□ -0.8
LIMCH1-222	ENST00000515847	ZNF496	Q96IT1	587 aa	Predicted RBP	10.07	□□□□□ -0.8
LIMCH1-222	ENST00000515847	AK7	Q96M32	723 aa		10.07	□□□□□ -0.8
LIMCH1-222	ENST00000515847	IFT57	Q9NWB7	429 aa		10.07	□□□□□ -0.8
LIMCH1-222	ENST00000515847	TFCP2L1	Q9NZI6	479 aa		10.07	□□□□□ -0.8
LIMCH1-222	ENST00000515847	TSPYL4	Q9UJ04	414 aa		10.07	□□□□□ -0.8
LIMCH1-222	ENST00000515847	TRIM35	Q9UPQ4	493 aa		10.07	□□□□□ -0.8
LIMCH1-222	ENST00000515847	SOS1	Q07889	1333 aa	Predicted RBP	10.07	□□□□□ -0.8
LIMCH1-222	ENST00000515847	HEG1	Q9ULI3	1381 aa		10.06	□□□□□ -0.8
LIMCH1-222	ENST00000515847	STARD3NL	O95772	234 aa		10.06	□□□□□ -0.8
LIMCH1-222	ENST00000515847	AMIGO3	Q86WK7	504 aa		10.06	□□□□□ -0.8
LIMCH1-222	ENST00000515847	WDR63	Q8IWG1	891 aa		10.06	□□□□□ -0.8
LIMCH1-222	ENST00000515847	DNAJC10	Q8IXB1	793 aa		10.06	□□□□□ -0.8
LIMCH1-222	ENST00000515847	MYH16	Q9H6N6	1097 aa		10.06	□□□□□ -0.8
LIMCH1-222	ENST00000515847	MIS18A	Q9NYP9	233 aa		10.06	□□□□□ -0.8
LIMCH1-222	ENST00000515847	LRP5	O75197	1615 aa		10.06	□□□□□ -0.8
LIMCH1-222	ENST00000515847	CNTNAP4	Q9C0A0	1308 aa		10.06	□□□□□ -0.8
LIMCH1-222	ENST00000515847	GNPAT	O15228	680 aa		10.05	□□□□□ -0.8
LIMCH1-222	ENST00000515847	SMIM5	Q71RC9	77 aa		10.05	□□□□□ -0.8
LIMCH1-222	ENST00000515847	FLAD1	Q8NFF5	587 aa		10.05	□□□□□ -0.8
LIMCH1-222	ENST00000515847	CFAP44	Q96MT7	982 aa		10.05	□□□□□ -0.8
LIMCH1-222	ENST00000515847	PHF14	O94880	888 aa		10.04	□□□□□ -0.8
LIMCH1-222	ENST00000515847	ZBTB7A	O95365	584 aa		10.04	□□□□□ -0.8
LIMCH1-222	ENST00000515847	HOXB7	P09629	217 aa		10.04	□□□□□ -0.8
LIMCH1-222	ENST00000515847	CRKL	P46109	303 aa	Known RBP	10.04	□□□□□ -0.8
LIMCH1-222	ENST00000515847	FKBP8	Q14318	412 aa		10.04	□□□□□ -0.8
LIMCH1-222	ENST00000515847	TSPYL2	Q9H2G4	693 aa	Predicted RBP	10.04	□□□□□ -0.8
LIMCH1-222	ENST00000515847	C4A	P0C0L4	1744 aa		10.04	□□□□□ -0.8
LIMCH1-222	ENST00000515847	LAMB4	A4D0S4	1761 aa		10.03	□□□□□ -0.8
LIMCH1-222	ENST00000515847	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	10.03	□□□□□ -0.8
LIMCH1-222	ENST00000515847	PRAMEF22	A3QJZ6	481 aa		10.03	□□□□□ -0.8
LIMCH1-222	ENST00000515847	SNRPA1	P09661	255 aa	Known RBP	10.03	□□□□□ -0.8
LIMCH1-222	ENST00000515847	CYP19A1	P11511	503 aa	Predicted RBP	10.03	□□□□□ -0.8
LIMCH1-222	ENST00000515847	SSFA2	P28290	1259 aa		10.03	□□□□□ -0.8
LIMCH1-222	ENST00000515847	RC3H1	Q5TC82	1133 aa	Known RBP	10.03	□□□□□ -0.8
LIMCH1-222	ENST00000515847	COL23A1	Q86Y22	540 aa	Predicted RBP	10.03	□□□□□ -0.8
LIMCH1-222	ENST00000515847	WWC1	Q8IX03	1113 aa		10.03	□□□□□ -0.8
LIMCH1-222	ENST00000515847	CCDC87	Q9NVE4	849 aa		10.03	□□□□□ -0.8
LIMCH1-222	ENST00000515847	ERBB4	Q15303	1308 aa		10.03	□□□□□ -0.8
LIMCH1-222	ENST00000515847		E9PSI1	815 aa		10.02	□□□□□ -0.81
LIMCH1-222	ENST00000515847	INTS5	Q6P9B9	1019 aa	Known RBP	10.02	□□□□□ -0.81
LIMCH1-222	ENST00000515847	ZBTB1	Q9Y2K1	713 aa		10.02	□□□□□ -0.81
LIMCH1-222	ENST00000515847	RTCB	Q9Y3I0	505 aa	Known RBP	10.02	□□□□□ -0.81
LIMCH1-222	ENST00000515847	LAS1L	Q9Y4W2	734 aa	Known RBP	10.02	□□□□□ -0.81
LIMCH1-222	ENST00000515847	RPS6KA4	O75676	772 aa		10.01	□□□□□ -0.81
LIMCH1-222	ENST00000515847	EIF4A1	P60842	406 aa	Known RBP	10.01	□□□□□ -0.81
LIMCH1-222	ENST00000515847	HNRNPU	Q00839	825 aa	Known RBP eCLIP	10.01	□□□□□ -0.81
LIMCH1-222	ENST00000515847	GOLGA2	Q08379	1002 aa		10.01	□□□□□ -0.81
LIMCH1-222	ENST00000515847	MTFR1L	Q9H019	292 aa		10.01	□□□□□ -0.81
LIMCH1-222	ENST00000515847	SPON1	Q9HCB6	807 aa		10.01	□□□□□ -0.81
LIMCH1-222	ENST00000515847	COL24A1	Q17RW2	1714 aa		10.01	□□□□□ -0.81
LIMCH1-222	ENST00000515847		A0A087WZG4	1122 aa		10	□□□□□ -0.81
LIMCH1-222	ENST00000515847	CHL1	O00533	1208 aa		10	□□□□□ -0.81
LIMCH1-222	ENST00000515847	MSL1	Q68DK7	614 aa		10	□□□□□ -0.81
LIMCH1-222	ENST00000515847	MS4A3	Q96HJ5	214 aa		10	□□□□□ -0.81
LIMCH1-222	ENST00000515847	SALL2	Q9Y467	1007 aa	Predicted RBP	10	□□□□□ -0.81
LIMCH1-222	ENST00000515847	USP16	Q9Y5T5	823 aa		10	□□□□□ -0.81
LIMCH1-222	ENST00000515847	ZBED9	Q6R2W3	1325 aa		10	□□□□□ -0.81
LIMCH1-222	ENST00000515847	COL15A1	P39059	1388 aa		10	□□□□□ -0.81
LIMCH1-222	ENST00000515847	GIGYF1	O75420	1035 aa	Predicted RBP	9.99	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms