RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.66■□□□□ 0.26
LIMCH1-220ENST00000514190 TEX13AQ9BXU3 409 aaPredicted RBP16.66■□□□□ 0.26
LIMCH1-220ENST00000514190 KCPQ6ZWJ8 1503 aa16.65■□□□□ 0.26
LIMCH1-220ENST00000514190 SLC4A2P04920 1241 aa16.65■□□□□ 0.26
LIMCH1-220ENST00000514190 TXNRD1Q16881 649 aa16.65■□□□□ 0.26
LIMCH1-220ENST00000514190 NECTIN2Q92692 538 aa16.65■□□□□ 0.26
LIMCH1-220ENST00000514190 RBM42Q9BTD8 480 aaKnown RBP16.65■□□□□ 0.26
LIMCH1-220ENST00000514190 STK31Q9BXU1 1019 aa16.65■□□□□ 0.26
LIMCH1-220ENST00000514190 USP16Q9Y5T5 823 aa16.65■□□□□ 0.26
LIMCH1-220ENST00000514190 PAPPAQ13219 1627 aa16.64■□□□□ 0.25
LIMCH1-220ENST00000514190 PLIN1O60240 522 aa16.64■□□□□ 0.25
LIMCH1-220ENST00000514190 SLC4A9Q96Q91 983 aa16.64■□□□□ 0.25
LIMCH1-220ENST00000514190 IPO8O15397 1037 aaKnown RBP16.63■□□□□ 0.25
LIMCH1-220ENST00000514190 FRAT1Q92837 279 aaPredicted RBP16.63■□□□□ 0.25
LIMCH1-220ENST00000514190 ANO8Q9HCE9 1232 aaPredicted RBP16.63■□□□□ 0.25
LIMCH1-220ENST00000514190 NOB1Q9ULX3 412 aaKnown RBP16.63■□□□□ 0.25
LIMCH1-220ENST00000514190 LOC102724428A0A0B4J2F2 783 aa16.62■□□□□ 0.25
LIMCH1-220ENST00000514190 SIK1P57059 783 aa16.62■□□□□ 0.25
LIMCH1-220ENST00000514190 ZKSCAN2Q63HK3 967 aa16.62■□□□□ 0.25
LIMCH1-220ENST00000514190 DNAJC10Q8IXB1 793 aa16.62■□□□□ 0.25
LIMCH1-220ENST00000514190 ARHGAP45Q92619 1136 aa16.62■□□□□ 0.25
LIMCH1-220ENST00000514190 DBF4Q9UBU7 674 aaPredicted RBP16.62■□□□□ 0.25
LIMCH1-220ENST00000514190 KIF16BQ96L93 1317 aa16.62■□□□□ 0.25
LIMCH1-220ENST00000514190 PALLDQ8WX93 1383 aa16.62■□□□□ 0.25
LIMCH1-220ENST00000514190 STARD3NLO95772 234 aa16.61■□□□□ 0.25
LIMCH1-220ENST00000514190 DDX21Q9NR30 783 aaKnown RBP eCLIP16.61■□□□□ 0.25
LIMCH1-220ENST00000514190 CHPF2Q9P2E5 772 aa16.61■□□□□ 0.25
LIMCH1-220ENST00000514190 UBR2Q8IWV8 1755 aa16.61■□□□□ 0.25
LIMCH1-220ENST00000514190 NEFLP07196 543 aa16.6■□□□□ 0.25
LIMCH1-220ENST00000514190 CANXP27824 592 aaKnown RBP16.6■□□□□ 0.25
LIMCH1-220ENST00000514190 PDE3AQ14432 1141 aa16.6■□□□□ 0.25
LIMCH1-220ENST00000514190 PDIA6Q15084 440 aa16.6■□□□□ 0.25
LIMCH1-220ENST00000514190 ATF7IPQ6VMQ6 1270 aa16.6■□□□□ 0.25
LIMCH1-220ENST00000514190 G2E3Q7L622 706 aa16.6■□□□□ 0.25
LIMCH1-220ENST00000514190 ERBB4Q15303 1308 aa16.6■□□□□ 0.25
LIMCH1-220ENST00000514190 ATP6V1AP38606 617 aa16.59■□□□□ 0.25
LIMCH1-220ENST00000514190 HYPKQ9NX55 129 aa16.59■□□□□ 0.25
LIMCH1-220ENST00000514190 STK32BQ9NY57 414 aa16.59■□□□□ 0.25
LIMCH1-220ENST00000514190 CYP19A1P11511 503 aaPredicted RBP16.58■□□□□ 0.24
LIMCH1-220ENST00000514190 MS4A1P11836 297 aa16.58■□□□□ 0.24
LIMCH1-220ENST00000514190 PROSER3Q2NL68 480 aa16.58■□□□□ 0.24
LIMCH1-220ENST00000514190 API5Q9BZZ5 524 aaKnown RBP16.58■□□□□ 0.24
LIMCH1-220ENST00000514190 PTPRCP08575 1304 aa16.58■□□□□ 0.24
LIMCH1-220ENST00000514190 CASZ1Q86V15 1759 aa16.58■□□□□ 0.24
LIMCH1-220ENST00000514190 LY75O60449 1722 aa16.57■□□□□ 0.24
LIMCH1-220ENST00000514190 NBPF26B4DH59 902 aa16.57■□□□□ 0.24
LIMCH1-220ENST00000514190 ANXA1P04083 346 aa16.57■□□□□ 0.24
LIMCH1-220ENST00000514190 A1BGP04217 495 aa16.57■□□□□ 0.24
LIMCH1-220ENST00000514190 TRIM27P14373 513 aa16.57■□□□□ 0.24
LIMCH1-220ENST00000514190 FLIIQ13045 1269 aa16.57■□□□□ 0.24
LIMCH1-220ENST00000514190 ITPK1Q13572 414 aa16.57■□□□□ 0.24
LIMCH1-220ENST00000514190 SLC15A2Q16348 729 aa16.57■□□□□ 0.24
LIMCH1-220ENST00000514190 C20orf194Q5TEA3 1177 aa16.57■□□□□ 0.24
LIMCH1-220ENST00000514190 NBPF10Q6P3W6 841 aaKnown RBP16.57■□□□□ 0.24
LIMCH1-220ENST00000514190 NBPF15Q8N660 670 aa16.57■□□□□ 0.24
LIMCH1-220ENST00000514190 IRX6P78412 446 aaPredicted RBP16.56■□□□□ 0.24
LIMCH1-220ENST00000514190 SLC27A3Q5K4L6 730 aa16.56■□□□□ 0.24
LIMCH1-220ENST00000514190 LRP10Q7Z4F1 713 aa16.56■□□□□ 0.24
LIMCH1-220ENST00000514190 DZIP1LQ8IYY4 767 aaKnown RBP16.56■□□□□ 0.24
LIMCH1-220ENST00000514190 PHAXQ9H814 394 aaKnown RBP16.56■□□□□ 0.24
LIMCH1-220ENST00000514190 TNNQ9UQP3 1299 aa16.56■□□□□ 0.24
LIMCH1-220ENST00000514190 FKBP8Q14318 412 aa16.55■□□□□ 0.24
LIMCH1-220ENST00000514190 PANK1Q8TE04 598 aa16.55■□□□□ 0.24
LIMCH1-220ENST00000514190 LRRC4BQ9NT99 713 aa16.55■□□□□ 0.24
LIMCH1-220ENST00000514190 C5P01031 1676 aa16.55■□□□□ 0.24
LIMCH1-220ENST00000514190 RLBP1P12271 317 aa16.54■□□□□ 0.24
LIMCH1-220ENST00000514190 MYL6BP14649 208 aa16.54■□□□□ 0.24
LIMCH1-220ENST00000514190 FKBP5Q13451 457 aaPredicted RBP16.54■□□□□ 0.24
LIMCH1-220ENST00000514190 CLUAP1Q96AJ1 413 aa16.54■□□□□ 0.24
LIMCH1-220ENST00000514190 CCNL1Q9UK58 526 aaPredicted RBP16.54■□□□□ 0.24
LIMCH1-220ENST00000514190 PIP4K2AP48426 406 aaPredicted RBP16.53■□□□□ 0.24
LIMCH1-220ENST00000514190 INTS5Q6P9B9 1019 aaKnown RBP16.53■□□□□ 0.24
LIMCH1-220ENST00000514190 COPS6Q7L5N1 327 aa16.53■□□□□ 0.24
LIMCH1-220ENST00000514190 FTSJ3Q8IY81 847 aaKnown RBP16.53■□□□□ 0.24
LIMCH1-220ENST00000514190 SPON1Q9HCB6 807 aa16.53■□□□□ 0.24
LIMCH1-220ENST00000514190 ERICH6BQ5W0A0 696 aa16.52■□□□□ 0.24
LIMCH1-220ENST00000514190 XAGE3Q8WTP9 111 aa16.52■□□□□ 0.24
LIMCH1-220ENST00000514190 CRBNQ96SW2 442 aa16.52■□□□□ 0.24
LIMCH1-220ENST00000514190 PDGFDQ9GZP0 370 aaPredicted RBP16.52■□□□□ 0.24
LIMCH1-220ENST00000514190 CCDC87Q9NVE4 849 aa16.52■□□□□ 0.24
LIMCH1-220ENST00000514190 ABCC4O15439 1325 aa16.51■□□□□ 0.23
LIMCH1-220ENST00000514190 CRKLP46109 303 aaKnown RBP16.51■□□□□ 0.23
LIMCH1-220ENST00000514190 KCNQ4P56696 695 aa16.51■□□□□ 0.23
LIMCH1-220ENST00000514190 AIMP1Q12904 312 aaKnown RBP16.51■□□□□ 0.23
LIMCH1-220ENST00000514190 ZNF827Q17R98 1081 aa16.51■□□□□ 0.23
LIMCH1-220ENST00000514190 RC3H1Q5TC82 1133 aaKnown RBP16.51■□□□□ 0.23
LIMCH1-220ENST00000514190 KSR2Q6VAB6 950 aa16.51■□□□□ 0.23
LIMCH1-220ENST00000514190 LINC00116Q8NCU8 138 aa16.51■□□□□ 0.23
LIMCH1-220ENST00000514190 GTF3C3Q9Y5Q9 886 aa16.51■□□□□ 0.23
LIMCH1-220ENST00000514190 CACNA1FO60840 1977 aa16.51■□□□□ 0.23
LIMCH1-220ENST00000514190 LAMB4A4D0S4 1761 aa16.51■□□□□ 0.23
LIMCH1-220ENST00000514190 ZNF831Q5JPB2 1677 aa16.5■□□□□ 0.23
LIMCH1-220ENST00000514190 PI4KAP2A4QPH2 592 aa16.5■□□□□ 0.23
LIMCH1-220ENST00000514190 F6X3S4 739 aa16.5■□□□□ 0.23
LIMCH1-220ENST00000514190 DDX58O95786 925 aaKnown RBP16.5■□□□□ 0.23
LIMCH1-220ENST00000514190 HMGB2P26583 209 aaKnown RBP16.5■□□□□ 0.23
LIMCH1-220ENST00000514190 IL6STP40189 918 aaPredicted RBP16.5■□□□□ 0.23
LIMCH1-220ENST00000514190 TMEM57Q8N5G2 664 aa16.5■□□□□ 0.23
LIMCH1-220ENST00000514190 PI4KAP1Q8N8J0 262 aa16.5■□□□□ 0.23
LIMCH1-220ENST00000514190 AKT1S1Q96B36 256 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms