RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 DDX46Q7L014 1031 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-218ENST00000513024 GNL3LQ9NVN8 582 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-218ENST00000513024 GCC2Q8IWJ2 1684 aa10.14□□□□□ -0.79
LIMCH1-218ENST00000513024 CAMK4Q16566 473 aa10.13□□□□□ -0.79
LIMCH1-218ENST00000513024 TMEM132EQ6IEE7 984 aa10.13□□□□□ -0.79
LIMCH1-218ENST00000513024 ABCA5Q8WWZ7 1642 aa10.13□□□□□ -0.79
LIMCH1-218ENST00000513024 FERMT3Q86UX7 667 aa10.13□□□□□ -0.79
LIMCH1-218ENST00000513024 NAP1L3Q99457 506 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-218ENST00000513024 DACH1Q9UI36 760 aa10.13□□□□□ -0.79
LIMCH1-218ENST00000513024 GNAI2P04899 355 aa10.13□□□□□ -0.79
LIMCH1-218ENST00000513024 JMYQ8N9B5 988 aa10.13□□□□□ -0.79
LIMCH1-218ENST00000513024 UPF3BQ9BZI7 483 aaKnown RBP10.13□□□□□ -0.79
LIMCH1-218ENST00000513024 ZNF652Q9Y2D9 606 aa10.13□□□□□ -0.79
LIMCH1-218ENST00000513024 ZBTB12Q9Y330 459 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-218ENST00000513024 IFFO1Q0D2I5 559 aa10.13□□□□□ -0.79
LIMCH1-218ENST00000513024 KIF4BQ2VIQ3 1234 aa10.13□□□□□ -0.79
LIMCH1-218ENST00000513024 ERC1Q8IUD2 1116 aa10.13□□□□□ -0.79
LIMCH1-218ENST00000513024 ZNF428Q96B54 188 aa10.13□□□□□ -0.79
LIMCH1-218ENST00000513024 DRC1Q96MC2 740 aa10.13□□□□□ -0.79
LIMCH1-218ENST00000513024 KIAA0586Q9BVV6 1533 aa10.13□□□□□ -0.79
LIMCH1-218ENST00000513024 MSH6P52701 1360 aa10.12□□□□□ -0.79
LIMCH1-218ENST00000513024 ARHGAP5Q13017 1502 aa10.12□□□□□ -0.79
LIMCH1-218ENST00000513024 MAP2K2P36507 400 aa10.12□□□□□ -0.79
LIMCH1-218ENST00000513024 C16orf45Q96MC5 204 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-218ENST00000513024 ZNF692Q9BU19 519 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-218ENST00000513024 PAXBP1Q9Y5B6 917 aa10.12□□□□□ -0.79
LIMCH1-218ENST00000513024 CAPN2P17655 700 aa10.12□□□□□ -0.79
LIMCH1-218ENST00000513024 RFC1P35251 1148 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-218ENST00000513024 SPECC1Q5M775 1068 aa10.12□□□□□ -0.79
LIMCH1-218ENST00000513024 MSL1Q68DK7 614 aa10.12□□□□□ -0.79
LIMCH1-218ENST00000513024 OTUD6BQ8N6M0 293 aa10.12□□□□□ -0.79
LIMCH1-218ENST00000513024 TAF4BQ92750 862 aa10.12□□□□□ -0.79
LIMCH1-218ENST00000513024 PZPP20742 1482 aa10.12□□□□□ -0.79
LIMCH1-218ENST00000513024 ADAMTS2O95450 1211 aa10.12□□□□□ -0.79
LIMCH1-218ENST00000513024 SLC4A2P04920 1241 aa10.12□□□□□ -0.79
LIMCH1-218ENST00000513024 FEZ1Q99689 392 aa10.12□□□□□ -0.79
LIMCH1-218ENST00000513024 GCOM1H8Y6P7 765 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-218ENST00000513024 KIF5CO60282 957 aa10.12□□□□□ -0.79
LIMCH1-218ENST00000513024 MYZAPP0CAP1 466 aa10.12□□□□□ -0.79
LIMCH1-218ENST00000513024 SEPT11Q9NVA2 429 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-218ENST00000513024 FEZ2Q9UHY8 353 aaPredicted RBP10.12□□□□□ -0.79
LIMCH1-218ENST00000513024 NEMFO60524 1076 aa10.11□□□□□ -0.79
LIMCH1-218ENST00000513024 CASQ1P31415 396 aa10.11□□□□□ -0.79
LIMCH1-218ENST00000513024 SART3Q15020 963 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-218ENST00000513024 MAP3K11Q16584 847 aa10.11□□□□□ -0.79
LIMCH1-218ENST00000513024 IMMTQ16891 758 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-218ENST00000513024 USP25Q9UHP3 1055 aa10.11□□□□□ -0.79
LIMCH1-218ENST00000513024 CLNS1AP54105 237 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-218ENST00000513024 SYCP1Q15431 976 aa10.11□□□□□ -0.79
LIMCH1-218ENST00000513024 C20orf194Q5TEA3 1177 aa10.11□□□□□ -0.79
LIMCH1-218ENST00000513024 PLB1Q6P1J6 1458 aa10.11□□□□□ -0.79
LIMCH1-218ENST00000513024 KCNH5Q8NCM2 988 aa10.11□□□□□ -0.79
LIMCH1-218ENST00000513024 TBC1D2Q9BYX2 928 aa10.11□□□□□ -0.79
LIMCH1-218ENST00000513024 IGSF3O75054 1194 aa10.11□□□□□ -0.79
LIMCH1-218ENST00000513024 CCDC30Q5VVM6 783 aa10.11□□□□□ -0.79
LIMCH1-218ENST00000513024 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.11□□□□□ -0.79
LIMCH1-218ENST00000513024 V9GYY5 206 aaPredicted RBP10.11□□□□□ -0.79
LIMCH1-218ENST00000513024 GRIN2AQ12879 1464 aa10.11□□□□□ -0.79
LIMCH1-218ENST00000513024 CD109Q6YHK3 1445 aa10.1□□□□□ -0.79
LIMCH1-218ENST00000513024 HIP1O00291 1037 aa10.1□□□□□ -0.79
LIMCH1-218ENST00000513024 SSFA2P28290 1259 aa10.1□□□□□ -0.79
LIMCH1-218ENST00000513024 TTLL12Q14166 644 aaPredicted RBP10.1□□□□□ -0.79
LIMCH1-218ENST00000513024 JAKMIP1Q96N16 626 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-218ENST00000513024 ZPR1O75312 459 aa10.1□□□□□ -0.79
LIMCH1-218ENST00000513024 ATP6V1AP38606 617 aa10.1□□□□□ -0.79
LIMCH1-218ENST00000513024 CFAP100Q494V2 611 aa10.1□□□□□ -0.79
LIMCH1-218ENST00000513024 BLOC1S2Q6QNY1 142 aa10.1□□□□□ -0.79
LIMCH1-218ENST00000513024 ARFGAP3Q9NP61 516 aa10.1□□□□□ -0.79
LIMCH1-218ENST00000513024 ATP2C2O75185 946 aa10.1□□□□□ -0.79
LIMCH1-218ENST00000513024 ANKRD1Q15327 319 aa10.1□□□□□ -0.79
LIMCH1-218ENST00000513024 HYPKQ9NX55 129 aa10.1□□□□□ -0.79
LIMCH1-218ENST00000513024 NUP153P49790 1475 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-218ENST00000513024 NUTM2GQ5VZR2 741 aa10.1□□□□□ -0.79
LIMCH1-218ENST00000513024 TNPO1Q92973 898 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-218ENST00000513024 LUC7L2Q9Y383 392 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-218ENST00000513024 SMTNL1A8MU46 457 aa10.09□□□□□ -0.79
LIMCH1-218ENST00000513024 UBE4AQ14139 1066 aa10.09□□□□□ -0.79
LIMCH1-218ENST00000513024 CWC27Q6UX04 472 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-218ENST00000513024 SCLT1Q96NL6 688 aa10.09□□□□□ -0.79
LIMCH1-218ENST00000513024 IL1RAPL2Q9NP60 686 aa10.09□□□□□ -0.79
LIMCH1-218ENST00000513024 PDRG1Q9NUG6 133 aa10.09□□□□□ -0.79
LIMCH1-218ENST00000513024 OGFRQ9NZT2 677 aa10.09□□□□□ -0.79
LIMCH1-218ENST00000513024 NEBLO76041 1014 aa10.09□□□□□ -0.79
LIMCH1-218ENST00000513024 CABP4P57796 275 aa10.09□□□□□ -0.79
LIMCH1-218ENST00000513024 DNAJC21Q5F1R6 531 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-218ENST00000513024 WDR63Q8IWG1 891 aa10.09□□□□□ -0.79
LIMCH1-218ENST00000513024 ZMAT2Q96NC0 199 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-218ENST00000513024 SIL1Q9H173 461 aa10.09□□□□□ -0.79
LIMCH1-218ENST00000513024 CAMSAP2Q08AD1 1489 aa10.09□□□□□ -0.79
LIMCH1-218ENST00000513024 SLC3A2P08195 630 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-218ENST00000513024 CFAP70Q5T0N1 1121 aa10.09□□□□□ -0.79
LIMCH1-218ENST00000513024 TRMT1Q9NXH9 659 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-218ENST00000513024 TMEM87AQ8NBN3 555 aa10.09□□□□□ -0.79
LIMCH1-218ENST00000513024 GPATCH8Q9UKJ3 1502 aaKnown RBP10.08□□□□□ -0.8
LIMCH1-218ENST00000513024 CCDC121Q6ZUS5 278 aa10.08□□□□□ -0.8
LIMCH1-218ENST00000513024 CDK5RAP3Q96JB5 506 aa10.08□□□□□ -0.8
LIMCH1-218ENST00000513024 IKQ13123 557 aaPredicted RBP10.08□□□□□ -0.8
LIMCH1-218ENST00000513024 CCDC158Q5M9N0 1113 aa10.08□□□□□ -0.8
LIMCH1-218ENST00000513024 GAS2L2Q8NHY3 880 aa10.08□□□□□ -0.8
LIMCH1-218ENST00000513024 SLC12A5Q9H2X9 1139 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms