RNA–Protein interactions for RNA: ENST00000512380.1

PDLIM3-208, Transcript of PDZ and LIM domain 3, humanhuman

TSL 2

Gene PDLIM3, Length 764 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-208ENST00000512380 RELBQ01201 579 aa9.99□□□□□ -0.81
PDLIM3-208ENST00000512380 TRIM52Q96A61 297 aa9.99□□□□□ -0.81
PDLIM3-208ENST00000512380 EIF5BO60841 1220 aaKnown RBP9.98□□□□□ -0.81
PDLIM3-208ENST00000512380 GIGYF1O75420 1035 aaPredicted RBP9.98□□□□□ -0.81
PDLIM3-208ENST00000512380 ADD1P35611 737 aaKnown RBP9.98□□□□□ -0.81
PDLIM3-208ENST00000512380 TRIM50Q86XT4 487 aa9.98□□□□□ -0.81
PDLIM3-208ENST00000512380 ZSCAN29Q8IWY8 852 aaPredicted RBP9.98□□□□□ -0.81
PDLIM3-208ENST00000512380 PHTF2Q8N3S3 785 aa9.98□□□□□ -0.81
PDLIM3-208ENST00000512380 CXXC1Q9P0U4 656 aaPredicted RBP9.98□□□□□ -0.81
PDLIM3-208ENST00000512380 DCTN4Q9UJW0 460 aa9.98□□□□□ -0.81
PDLIM3-208ENST00000512380 CTSOP43234 321 aaPredicted RBP9.97□□□□□ -0.81
PDLIM3-208ENST00000512380 ATP1A2P50993 1020 aa9.97□□□□□ -0.81
PDLIM3-208ENST00000512380 TAS1R3Q7RTX0 852 aa9.97□□□□□ -0.81
PDLIM3-208ENST00000512380 KDF1Q8NAX2 398 aaPredicted RBP9.97□□□□□ -0.81
PDLIM3-208ENST00000512380 INSM2Q96T92 566 aaPredicted RBP9.97□□□□□ -0.81
PDLIM3-208ENST00000512380 PTSQ03393 145 aa9.96□□□□□ -0.82
PDLIM3-208ENST00000512380 EAPPQ56P03 285 aaPredicted RBP9.96□□□□□ -0.82
PDLIM3-208ENST00000512380 CYLDQ9NQC7 956 aa9.96□□□□□ -0.82
PDLIM3-208ENST00000512380 FIGNL2A6NMB9 653 aa9.95□□□□□ -0.82
PDLIM3-208ENST00000512380 C21orf2O43822 256 aa9.95□□□□□ -0.82
PDLIM3-208ENST00000512380 OCLNQ16625 522 aa9.95□□□□□ -0.82
PDLIM3-208ENST00000512380 MAP7D1Q3KQU3 841 aa9.95□□□□□ -0.82
PDLIM3-208ENST00000512380 RNF20Q5VTR2 975 aa9.95□□□□□ -0.82
PDLIM3-208ENST00000512380 RNF217Q8TC41 542 aa9.95□□□□□ -0.82
PDLIM3-208ENST00000512380 NOD1Q9Y239 953 aa9.95□□□□□ -0.82
PDLIM3-208ENST00000512380 CADPSQ9ULU8 1353 aa9.95□□□□□ -0.82
PDLIM3-208ENST00000512380 LORP23490 312 aaPredicted RBP9.94□□□□□ -0.82
PDLIM3-208ENST00000512380 PTGIRP43119 386 aa9.94□□□□□ -0.82
PDLIM3-208ENST00000512380 C9orf131Q5VYM1 1079 aa9.94□□□□□ -0.82
PDLIM3-208ENST00000512380 LARGE2Q8N3Y3 721 aa9.94□□□□□ -0.82
PDLIM3-208ENST00000512380 GTF3C2Q8WUA4 911 aaPredicted RBP9.94□□□□□ -0.82
PDLIM3-208ENST00000512380 BACH2Q9BYV9 841 aa9.94□□□□□ -0.82
PDLIM3-208ENST00000512380 POLMQ9NP87 494 aaPredicted RBP9.94□□□□□ -0.82
PDLIM3-208ENST00000512380 KIAA1024Q9UPX6 916 aa9.94□□□□□ -0.82
PDLIM3-208ENST00000512380 RBM19Q9Y4C8 960 aaKnown RBP9.94□□□□□ -0.82
PDLIM3-208ENST00000512380 ERVK-9P63128 1117 aa9.93□□□□□ -0.82
PDLIM3-208ENST00000512380 ZNF395Q9H8N7 513 aaPredicted RBP9.93□□□□□ -0.82
PDLIM3-208ENST00000512380 SLC35F4A4IF30 521 aa9.92□□□□□ -0.82
PDLIM3-208ENST00000512380 ZBTB7BO15156 539 aaPredicted RBP9.92□□□□□ -0.82
PDLIM3-208ENST00000512380 LGR5O75473 907 aa9.92□□□□□ -0.82
PDLIM3-208ENST00000512380 NCLP19338 710 aaKnown RBP9.92□□□□□ -0.82
PDLIM3-208ENST00000512380 SEC13P55735 322 aa9.92□□□□□ -0.82
PDLIM3-208ENST00000512380 HDLBPQ00341 1268 aaKnown RBP9.92□□□□□ -0.82
PDLIM3-208ENST00000512380 COL19A1Q14993 1142 aa9.92□□□□□ -0.82
PDLIM3-208ENST00000512380 TSGA10IPQ3SY00 556 aa9.92□□□□□ -0.82
PDLIM3-208ENST00000512380 SEPT3Q9UH03 358 aa9.92□□□□□ -0.82
PDLIM3-208ENST00000512380 CHIC2Q9UKJ5 165 aa9.92□□□□□ -0.82
PDLIM3-208ENST00000512380 DNMT3AQ9Y6K1 912 aaPredicted RBP9.92□□□□□ -0.82
PDLIM3-208ENST00000512380 SCAMP3O14828 347 aaKnown RBP9.91□□□□□ -0.82
PDLIM3-208ENST00000512380 DKK1O94907 266 aa9.91□□□□□ -0.82
PDLIM3-208ENST00000512380 FKBP4Q02790 459 aaKnown RBP eCLIP9.91□□□□□ -0.82
PDLIM3-208ENST00000512380 MTMR3Q13615 1198 aa9.91□□□□□ -0.82
PDLIM3-208ENST00000512380 ECM1Q16610 540 aa9.91□□□□□ -0.82
PDLIM3-208ENST00000512380 CC2D2BQ6DHV5 1058 aa9.91□□□□□ -0.82
PDLIM3-208ENST00000512380 SIX5Q8N196 739 aa9.91□□□□□ -0.82
PDLIM3-208ENST00000512380 CCDC155Q8N6L0 562 aa9.91□□□□□ -0.82
PDLIM3-208ENST00000512380 ZSCAN1Q8NBB4 408 aa9.91□□□□□ -0.82
PDLIM3-208ENST00000512380 MKNK1Q9BUB5 465 aa9.91□□□□□ -0.82
PDLIM3-208ENST00000512380 SFI1A8K8P3 1242 aa9.9□□□□□ -0.82
PDLIM3-208ENST00000512380 ARHGAP4P98171 946 aa9.9□□□□□ -0.82
PDLIM3-208ENST00000512380 RGL4Q8IZJ4 473 aa9.9□□□□□ -0.82
PDLIM3-208ENST00000512380 GTF2IP78347 998 aa9.89□□□□□ -0.83
PDLIM3-208ENST00000512380 GIMAP6Q6P9H5 292 aa9.89□□□□□ -0.83
PDLIM3-208ENST00000512380 NANOS1Q8WY41 292 aaKnown RBP9.89□□□□□ -0.83
PDLIM3-208ENST00000512380 ANKRD62A6NC57 917 aa9.88□□□□□ -0.83
PDLIM3-208ENST00000512380 SF3B2Q13435 895 aaKnown RBP9.88□□□□□ -0.83
PDLIM3-208ENST00000512380 MRPL58Q14197 206 aaKnown RBP9.88□□□□□ -0.83
PDLIM3-208ENST00000512380 OXLD1Q5BKU9 147 aa9.88□□□□□ -0.83
PDLIM3-208ENST00000512380 CCDC102BQ68D86 513 aa9.88□□□□□ -0.83
PDLIM3-208ENST00000512380 DPH6Q7L8W6 267 aa9.88□□□□□ -0.83
PDLIM3-208ENST00000512380 PIK3R5Q8WYR1 880 aa9.88□□□□□ -0.83
PDLIM3-208ENST00000512380 HINFPQ9BQA5 517 aa9.88□□□□□ -0.83
PDLIM3-208ENST00000512380 DOLKQ9UPQ8 538 aa9.88□□□□□ -0.83
PDLIM3-208ENST00000512380 PCDHB11Q9Y5F2 797 aa9.88□□□□□ -0.83
PDLIM3-208ENST00000512380 SENP3-EIF4A1A0A087X0R7 540 aa9.87□□□□□ -0.83
PDLIM3-208ENST00000512380 FAM181BA6NEQ2 426 aa9.87□□□□□ -0.83
PDLIM3-208ENST00000512380 P4HBP07237 508 aaKnown RBP9.87□□□□□ -0.83
PDLIM3-208ENST00000512380 SCTRP47872 440 aa9.87□□□□□ -0.83
PDLIM3-208ENST00000512380 RNF144AP50876 292 aaPredicted RBP9.87□□□□□ -0.83
PDLIM3-208ENST00000512380 ANKRD13AQ8IZ07 590 aa9.87□□□□□ -0.83
PDLIM3-208ENST00000512380 TPCN2Q8NHX9 752 aa9.87□□□□□ -0.83
PDLIM3-208ENST00000512380 SCRIBQ14160 1630 aa9.86□□□□□ -0.83
PDLIM3-208ENST00000512380 ITGA6P23229 1130 aa9.86□□□□□ -0.83
PDLIM3-208ENST00000512380 GPC1P35052 558 aa9.86□□□□□ -0.83
PDLIM3-208ENST00000512380 PSME1Q06323 249 aa9.86□□□□□ -0.83
PDLIM3-208ENST00000512380 LYSMD3Q7Z3D4 306 aa9.86□□□□□ -0.83
PDLIM3-208ENST00000512380 CYP2U1Q7Z449 544 aa9.86□□□□□ -0.83
PDLIM3-208ENST00000512380 TANGO6Q9C0B7 1094 aa9.86□□□□□ -0.83
PDLIM3-208ENST00000512380 CAPN12Q6ZSI9 719 aa9.85□□□□□ -0.83
PDLIM3-208ENST00000512380 CCDC85AQ96PX6 553 aaPredicted RBP9.85□□□□□ -0.83
PDLIM3-208ENST00000512380 GPR161Q8N6U8 529 aaKnown RBP9.84□□□□□ -0.83
PDLIM3-208ENST00000512380 DNAJC2Q99543 621 aaKnown RBP9.84□□□□□ -0.83
PDLIM3-208ENST00000512380 OSBPL3Q9H4L5 887 aa9.84□□□□□ -0.83
PDLIM3-208ENST00000512380 A0A1W2PRU2 124 aa9.83□□□□□ -0.84
PDLIM3-208ENST00000512380 KRT76Q01546 638 aa9.83□□□□□ -0.84
PDLIM3-208ENST00000512380 RAD51AP2Q09MP3 1159 aa9.83□□□□□ -0.84
PDLIM3-208ENST00000512380 CLN3Q13286 438 aa9.83□□□□□ -0.84
PDLIM3-208ENST00000512380 TMEM87AQ8NBN3 555 aa9.83□□□□□ -0.84
PDLIM3-208ENST00000512380 POLR3GLQ9BT43 218 aa9.83□□□□□ -0.84
PDLIM3-208ENST00000512380 HIRIP3Q9BW71 556 aaPredicted RBP9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms