RNA–Protein interactions for RNA: ENST00000511284.5

TRIM6-210, Transcript of tripartite motif containing 6, human

TSL 5

Gene TRIM6, Length 740 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIM6-210	ENST00000511284	INTS5	Q6P9B9	1019 aa	Known RBP	10.83	□□□□□ -0.68
TRIM6-210	ENST00000511284	ARHGEF1	Q92888	912 aa	Known RBP	10.83	□□□□□ -0.68
TRIM6-210	ENST00000511284	CD2AP	Q9Y5K6	639 aa		10.83	□□□□□ -0.68
TRIM6-210	ENST00000511284	BTBD11	A6QL63	1104 aa		10.82	□□□□□ -0.68
TRIM6-210	ENST00000511284	STARD3NL	O95772	234 aa		10.82	□□□□□ -0.68
TRIM6-210	ENST00000511284	RFC4	P35249	363 aa		10.82	□□□□□ -0.68
TRIM6-210	ENST00000511284	DNAJC10	Q8IXB1	793 aa		10.82	□□□□□ -0.68
TRIM6-210	ENST00000511284	ZNF496	Q96IT1	587 aa	Predicted RBP	10.82	□□□□□ -0.68
TRIM6-210	ENST00000511284	FMNL2	Q96PY5	1086 aa		10.82	□□□□□ -0.68
TRIM6-210	ENST00000511284	CCDC87	Q9NVE4	849 aa		10.82	□□□□□ -0.68
TRIM6-210	ENST00000511284	HEG1	Q9ULI3	1381 aa		10.81	□□□□□ -0.68
TRIM6-210	ENST00000511284	KCP	Q6ZWJ8	1503 aa		10.81	□□□□□ -0.68
TRIM6-210	ENST00000511284	ZNF316	A6NFI3	1004 aa	Predicted RBP	10.81	□□□□□ -0.68
TRIM6-210	ENST00000511284	TAF7	Q15545	349 aa	Predicted RBP	10.81	□□□□□ -0.68
TRIM6-210	ENST00000511284	NFE2L2	Q16236	605 aa		10.81	□□□□□ -0.68
TRIM6-210	ENST00000511284	PNISR	Q8TF01	805 aa	Known RBP	10.81	□□□□□ -0.68
TRIM6-210	ENST00000511284	UBR3	Q6ZT12	1888 aa		10.81	□□□□□ -0.68
TRIM6-210	ENST00000511284	TUBGCP6	Q96RT7	1819 aa		10.8	□□□□□ -0.68
TRIM6-210	ENST00000511284	HSPA1A	P0DMV8	641 aa	Known RBP	10.8	□□□□□ -0.68
TRIM6-210	ENST00000511284	HSPA1B	P0DMV9	641 aa	Known RBP	10.8	□□□□□ -0.68
TRIM6-210	ENST00000511284	GYS1	P13807	737 aa		10.8	□□□□□ -0.68
TRIM6-210	ENST00000511284	MCM10	Q7L590	875 aa		10.8	□□□□□ -0.68
TRIM6-210	ENST00000511284	MAPK8IP3	Q9UPT6	1336 aa		10.8	□□□□□ -0.68
TRIM6-210	ENST00000511284	COL5A3	P25940	1745 aa	Predicted RBP	10.79	□□□□□ -0.68
TRIM6-210	ENST00000511284	SNRPA1	P09661	255 aa	Known RBP	10.79	□□□□□ -0.68
TRIM6-210	ENST00000511284	MSL1	Q68DK7	614 aa		10.79	□□□□□ -0.68
TRIM6-210	ENST00000511284	SMIM5	Q71RC9	77 aa		10.79	□□□□□ -0.68
TRIM6-210	ENST00000511284	BABAM1	Q9NWV8	329 aa		10.79	□□□□□ -0.68
TRIM6-210	ENST00000511284	SOS1	Q07889	1333 aa	Predicted RBP	10.79	□□□□□ -0.68
TRIM6-210	ENST00000511284	USP42	Q9H9J4	1324 aa	Known RBP	10.79	□□□□□ -0.68
TRIM6-210	ENST00000511284	IL6ST	P40189	918 aa	Predicted RBP	10.78	□□□□□ -0.68
TRIM6-210	ENST00000511284	EIF5	P55010	431 aa	Known RBP	10.78	□□□□□ -0.68
TRIM6-210	ENST00000511284	LMOD3	Q0VAK6	560 aa		10.78	□□□□□ -0.68
TRIM6-210	ENST00000511284	NARF	Q9UHQ1	456 aa		10.78	□□□□□ -0.68
TRIM6-210	ENST00000511284		A0A087WZG4	1122 aa		10.77	□□□□□ -0.69
TRIM6-210	ENST00000511284	ZPR1	O75312	459 aa		10.77	□□□□□ -0.69
TRIM6-210	ENST00000511284	MMP10	P09238	476 aa		10.77	□□□□□ -0.69
TRIM6-210	ENST00000511284	TMPO	P42166	694 aa	Known RBP	10.77	□□□□□ -0.69
TRIM6-210	ENST00000511284	TGFB2	P61812	414 aa		10.77	□□□□□ -0.69
TRIM6-210	ENST00000511284	DCTN1	Q14203	1278 aa		10.77	□□□□□ -0.69
TRIM6-210	ENST00000511284	WDR43	Q15061	677 aa	Known RBP eCLIP	10.77	□□□□□ -0.69
TRIM6-210	ENST00000511284	FAM161A	Q3B820	660 aa		10.77	□□□□□ -0.69
TRIM6-210	ENST00000511284	RBM46	Q8TBY0	533 aa	Known RBP	10.77	□□□□□ -0.69
TRIM6-210	ENST00000511284	RUNDC1	Q96C34	613 aa		10.77	□□□□□ -0.69
TRIM6-210	ENST00000511284	ZBTB1	Q9Y2K1	713 aa		10.77	□□□□□ -0.69
TRIM6-210	ENST00000511284	TJP1	Q07157	1748 aa		10.77	□□□□□ -0.69
TRIM6-210	ENST00000511284	UBR2	Q8IWV8	1755 aa		10.77	□□□□□ -0.69
TRIM6-210	ENST00000511284	RGL2	O15211	777 aa		10.76	□□□□□ -0.69
TRIM6-210	ENST00000511284	KCNQ3	O43525	872 aa		10.76	□□□□□ -0.69
TRIM6-210	ENST00000511284	TM4SF1	P30408	202 aa		10.76	□□□□□ -0.69
TRIM6-210	ENST00000511284	RIPK4	P57078	832 aa		10.76	□□□□□ -0.69
TRIM6-210	ENST00000511284	ADAMTS8	Q9UP79	889 aa		10.76	□□□□□ -0.69
TRIM6-210	ENST00000511284	PARP3	Q9Y6F1	533 aa		10.76	□□□□□ -0.69
TRIM6-210	ENST00000511284	COL15A1	P39059	1388 aa		10.76	□□□□□ -0.69
TRIM6-210	ENST00000511284	SIPA1L3	O60292	1781 aa	Predicted RBP	10.75	□□□□□ -0.69
TRIM6-210	ENST00000511284	USP16	Q9Y5T5	823 aa		10.75	□□□□□ -0.69
TRIM6-210	ENST00000511284	MYH14	Q7Z406	1995 aa	Known RBP	10.74	□□□□□ -0.69
TRIM6-210	ENST00000511284	CANX	P27824	592 aa	Known RBP	10.74	□□□□□ -0.69
TRIM6-210	ENST00000511284	EIF4A1	P60842	406 aa	Known RBP	10.74	□□□□□ -0.69
TRIM6-210	ENST00000511284	FSTL1	Q12841	308 aa		10.74	□□□□□ -0.69
TRIM6-210	ENST00000511284	FKBP8	Q14318	412 aa		10.74	□□□□□ -0.69
TRIM6-210	ENST00000511284	NPM2	Q86SE8	214 aa	Known RBP	10.74	□□□□□ -0.69
TRIM6-210	ENST00000511284	C16orf71	Q8IYS4	520 aa	Predicted RBP	10.74	□□□□□ -0.69
TRIM6-210	ENST00000511284	SRP68	Q9UHB9	627 aa	Known RBP	10.74	□□□□□ -0.69
TRIM6-210	ENST00000511284	A1BG	P04217	495 aa		10.73	□□□□□ -0.69
TRIM6-210	ENST00000511284	USPL1	Q5W0Q7	1092 aa		10.73	□□□□□ -0.69
TRIM6-210	ENST00000511284	CLEC4G	Q6UXB4	293 aa		10.73	□□□□□ -0.69
TRIM6-210	ENST00000511284	BCL2L12	Q9HB09	334 aa		10.73	□□□□□ -0.69
TRIM6-210	ENST00000511284	NMRK2	Q9NPI5	230 aa		10.73	□□□□□ -0.69
TRIM6-210	ENST00000511284	POLRMT	O00411	1230 aa	Known RBP	10.72	□□□□□ -0.69
TRIM6-210	ENST00000511284	NCBP3	Q53F19	620 aa	Known RBP	10.72	□□□□□ -0.69
TRIM6-210	ENST00000511284	VIRMA	Q69YN4	1812 aa	Known RBP	10.72	□□□□□ -0.69
TRIM6-210	ENST00000511284	CHL1	O00533	1208 aa		10.71	□□□□□ -0.69
TRIM6-210	ENST00000511284	ANP32C	O43423	234 aa		10.71	□□□□□ -0.69
TRIM6-210	ENST00000511284	DDR1	Q08345	913 aa		10.71	□□□□□ -0.69
TRIM6-210	ENST00000511284	NFIX	Q14938	502 aa		10.71	□□□□□ -0.69
TRIM6-210	ENST00000511284	ERBB4	Q15303	1308 aa		10.71	□□□□□ -0.69
TRIM6-210	ENST00000511284	C10orf71	Q711Q0	1435 aa		10.71	□□□□□ -0.69
TRIM6-210	ENST00000511284	THUMPD2	Q9BTF0	503 aa	Known RBP	10.71	□□□□□ -0.69
TRIM6-210	ENST00000511284	MIS18A	Q9NYP9	233 aa		10.71	□□□□□ -0.69
TRIM6-210	ENST00000511284	TRIM35	Q9UPQ4	493 aa		10.71	□□□□□ -0.69
TRIM6-210	ENST00000511284	PRAMEF22	A3QJZ6	481 aa		10.7	□□□□□ -0.7
TRIM6-210	ENST00000511284	CAMTA2	O94983	1202 aa		10.7	□□□□□ -0.7
TRIM6-210	ENST00000511284	CCDC146	Q8IYE0	955 aa		10.7	□□□□□ -0.7
TRIM6-210	ENST00000511284	TSPYL4	Q9UJ04	414 aa		10.7	□□□□□ -0.7
TRIM6-210	ENST00000511284	PDZRN3	Q9UPQ7	1066 aa		10.7	□□□□□ -0.7
TRIM6-210	ENST00000511284	C4A	P0C0L4	1744 aa		10.7	□□□□□ -0.7
TRIM6-210	ENST00000511284	NBPF26	B4DH59	902 aa		10.69	□□□□□ -0.7
TRIM6-210	ENST00000511284	SERPINB2	P05120	415 aa		10.69	□□□□□ -0.7
TRIM6-210	ENST00000511284	CALD1	Q05682	793 aa	Known RBP	10.69	□□□□□ -0.7
TRIM6-210	ENST00000511284	NBPF10	Q6P3W6	841 aa	Known RBP	10.69	□□□□□ -0.7
TRIM6-210	ENST00000511284	DZIP3	Q86Y13	1208 aa	Known RBP	10.69	□□□□□ -0.7
TRIM6-210	ENST00000511284	NBPF15	Q8N660	670 aa		10.69	□□□□□ -0.7
TRIM6-210	ENST00000511284	CFAP44	Q96MT7	982 aa		10.69	□□□□□ -0.7
TRIM6-210	ENST00000511284	TBC1D2B	Q9UPU7	963 aa		10.69	□□□□□ -0.7
TRIM6-210	ENST00000511284	ZNF652	Q9Y2D9	606 aa		10.69	□□□□□ -0.7
TRIM6-210	ENST00000511284	PXDNL	A1KZ92	1463 aa		10.68	□□□□□ -0.7
TRIM6-210	ENST00000511284	ERVV-1	B6SEH8	477 aa		10.68	□□□□□ -0.7
TRIM6-210	ENST00000511284	APAF1	O14727	1248 aa		10.68	□□□□□ -0.7
TRIM6-210	ENST00000511284	HOXB7	P09629	217 aa		10.68	□□□□□ -0.7

Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms