RNA–Protein interactions for RNA: ENST00000509009.5

PDPN-208, Transcript of podoplanin, humanhuman

TSL 4 BASIC

Gene PDPN, Length 571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-208ENST00000509009 U2AF1L5P0DN76 240 aaPredicted RBP16.74■□□□□ 0.27
PDPN-208ENST00000509009 U2AF1Q01081 240 aaKnown RBP eCLIP16.74■□□□□ 0.27
PDPN-208ENST00000509009 ATP10DQ9P241 1426 aa16.73■□□□□ 0.27
PDPN-208ENST00000509009 CANXP27824 592 aaKnown RBP16.73■□□□□ 0.27
PDPN-208ENST00000509009 TEX13AQ9BXU3 409 aaPredicted RBP16.73■□□□□ 0.27
PDPN-208ENST00000509009 BCL2L12Q9HB09 334 aa16.73■□□□□ 0.27
PDPN-208ENST00000509009 EIF5P55010 431 aaKnown RBP16.72■□□□□ 0.27
PDPN-208ENST00000509009 ARHGAP27Q6ZUM4 889 aa16.72■□□□□ 0.27
PDPN-208ENST00000509009 C4AP0C0L4 1744 aa16.72■□□□□ 0.27
PDPN-208ENST00000509009 CEMIPQ8WUJ3 1361 aa16.72■□□□□ 0.27
PDPN-208ENST00000509009 KIF13BQ9NQT8 1826 aa16.71■□□□□ 0.27
PDPN-208ENST00000509009 KCNQ3O43525 872 aa16.71■□□□□ 0.27
PDPN-208ENST00000509009 NFIXQ14938 502 aa16.71■□□□□ 0.27
PDPN-208ENST00000509009 PIM2Q9P1W9 311 aa16.71■□□□□ 0.27
PDPN-208ENST00000509009 ADCY9O60503 1353 aa16.71■□□□□ 0.27
PDPN-208ENST00000509009 HEG1Q9ULI3 1381 aa16.71■□□□□ 0.27
PDPN-208ENST00000509009 COL15A1P39059 1388 aa16.7■□□□□ 0.26
PDPN-208ENST00000509009 BTBD11A6QL63 1104 aa16.7■□□□□ 0.26
PDPN-208ENST00000509009 FMNL2Q96PY5 1086 aa16.7■□□□□ 0.26
PDPN-208ENST00000509009 GPBP1L1Q9HC44 474 aaPredicted RBP16.7■□□□□ 0.26
PDPN-208ENST00000509009 A0A087WZG4 1122 aa16.69■□□□□ 0.26
PDPN-208ENST00000509009 CHRNA5P30532 468 aa16.69■□□□□ 0.26
PDPN-208ENST00000509009 ZNF526Q8TF50 670 aaPredicted RBP16.69■□□□□ 0.26
PDPN-208ENST00000509009 N4BP2Q86UW6 1770 aaPredicted RBP16.69■□□□□ 0.26
PDPN-208ENST00000509009 KIAA1551Q9HCM1 1747 aa16.68■□□□□ 0.26
PDPN-208ENST00000509009 SENP3-EIF4A1A0A087X0R7 540 aa16.68■□□□□ 0.26
PDPN-208ENST00000509009 A1BGP04217 495 aa16.68■□□□□ 0.26
PDPN-208ENST00000509009 SERPINB2P05120 415 aa16.68■□□□□ 0.26
PDPN-208ENST00000509009 DALRD3Q5D0E6 543 aaKnown RBP16.68■□□□□ 0.26
PDPN-208ENST00000509009 MCM10Q7L590 875 aa16.68■□□□□ 0.26
PDPN-208ENST00000509009 VIRMAQ69YN4 1812 aaKnown RBP16.68■□□□□ 0.26
PDPN-208ENST00000509009 HTATSF1O43719 755 aaKnown RBP16.67■□□□□ 0.26
PDPN-208ENST00000509009 RTF1Q92541 710 aaKnown RBP16.67■□□□□ 0.26
PDPN-208ENST00000509009 IL6STP40189 918 aaPredicted RBP16.66■□□□□ 0.26
PDPN-208ENST00000509009 DCTN1Q14203 1278 aa16.66■□□□□ 0.26
PDPN-208ENST00000509009 TBC1D2BQ9UPU7 963 aa16.66■□□□□ 0.26
PDPN-208ENST00000509009 USP16Q9Y5T5 823 aa16.66■□□□□ 0.26
PDPN-208ENST00000509009 UBR2Q8IWV8 1755 aa16.65■□□□□ 0.26
PDPN-208ENST00000509009 BICDL1Q6ZP65 573 aa16.65■□□□□ 0.26
PDPN-208ENST00000509009 TBC1D9BQ66K14 1250 aa16.64■□□□□ 0.25
PDPN-208ENST00000509009 ZNF330Q9Y3S2 320 aaPredicted RBP16.64■□□□□ 0.25
PDPN-208ENST00000509009 PRAMEF22A3QJZ6 481 aa16.63■□□□□ 0.25
PDPN-208ENST00000509009 TAF7Q15545 349 aaPredicted RBP16.63■□□□□ 0.25
PDPN-208ENST00000509009 KIF3CO14782 793 aa16.62■□□□□ 0.25
PDPN-208ENST00000509009 SNRPA1P09661 255 aaKnown RBP16.62■□□□□ 0.25
PDPN-208ENST00000509009 C9orf131Q5VYM1 1079 aa16.62■□□□□ 0.25
PDPN-208ENST00000509009 PLEKHF1Q96S99 279 aa16.62■□□□□ 0.25
PDPN-208ENST00000509009 SIPA1L3O60292 1781 aaPredicted RBP16.61■□□□□ 0.25
PDPN-208ENST00000509009 CAMTA2O94983 1202 aa16.61■□□□□ 0.25
PDPN-208ENST00000509009 NPM2Q86SE8 214 aaKnown RBP16.61■□□□□ 0.25
PDPN-208ENST00000509009 MIS18AQ9NYP9 233 aa16.61■□□□□ 0.25
PDPN-208ENST00000509009 H0YIN7 160 aa16.6■□□□□ 0.25
PDPN-208ENST00000509009 PIP4K2AP48426 406 aaPredicted RBP16.6■□□□□ 0.25
PDPN-208ENST00000509009 C2CD5Q86YS7 1000 aa16.6■□□□□ 0.25
PDPN-208ENST00000509009 BRCA1P38398 1863 aaKnown RBP16.59■□□□□ 0.25
PDPN-208ENST00000509009 NEFMP07197 916 aa16.59■□□□□ 0.25
PDPN-208ENST00000509009 DZIP3Q86Y13 1208 aaKnown RBP16.59■□□□□ 0.25
PDPN-208ENST00000509009 TTLL6Q8N841 843 aa16.59■□□□□ 0.25
PDPN-208ENST00000509009 SETDB2Q96T68 719 aa16.59■□□□□ 0.25
PDPN-208ENST00000509009 BRIP1Q9BX63 1249 aa16.59■□□□□ 0.25
PDPN-208ENST00000509009 CEP350Q5VT06 3117 aa16.59■□□□□ 0.25
PDPN-208ENST00000509009 NBPF26B4DH59 902 aa16.58■□□□□ 0.24
PDPN-208ENST00000509009 PRR5LQ6MZQ0 368 aa16.58■□□□□ 0.24
PDPN-208ENST00000509009 NBPF10Q6P3W6 841 aaKnown RBP16.58■□□□□ 0.24
PDPN-208ENST00000509009 CCDC24Q8N4L8 307 aa16.58■□□□□ 0.24
PDPN-208ENST00000509009 NBPF15Q8N660 670 aa16.58■□□□□ 0.24
PDPN-208ENST00000509009 AFDNP55196 1824 aaKnown RBP16.57■□□□□ 0.24
PDPN-208ENST00000509009 NRXN2Q9P2S2 1712 aa16.57■□□□□ 0.24
PDPN-208ENST00000509009 CARMIL3Q8ND23 1372 aa16.57■□□□□ 0.24
PDPN-208ENST00000509009 RALBP1Q15311 655 aa16.57■□□□□ 0.24
PDPN-208ENST00000509009 NFE2L2Q16236 605 aa16.57■□□□□ 0.24
PDPN-208ENST00000509009 PNNQ9H307 717 aaKnown RBP16.57■□□□□ 0.24
PDPN-208ENST00000509009 RNF181Q9P0P0 153 aa16.57■□□□□ 0.24
PDPN-208ENST00000509009 PDE6BP35913 854 aa16.56■□□□□ 0.24
PDPN-208ENST00000509009 DDX10Q13206 875 aaKnown RBP16.56■□□□□ 0.24
PDPN-208ENST00000509009 CLEC4GQ6UXB4 293 aa16.56■□□□□ 0.24
PDPN-208ENST00000509009 PNISRQ8TF01 805 aaKnown RBP16.56■□□□□ 0.24
PDPN-208ENST00000509009 NMRK2Q9NPI5 230 aa16.56■□□□□ 0.24
PDPN-208ENST00000509009 PDZRN3Q9UPQ7 1066 aa16.56■□□□□ 0.24
PDPN-208ENST00000509009 ARFGEF1Q9Y6D6 1849 aa16.56■□□□□ 0.24
PDPN-208ENST00000509009 ZNF622Q969S3 477 aaKnown RBP eCLIP16.55■□□□□ 0.24
PDPN-208ENST00000509009 HSPA6P17066 643 aa16.54■□□□□ 0.24
PDPN-208ENST00000509009 THUMPD2Q9BTF0 503 aaKnown RBP16.54■□□□□ 0.24
PDPN-208ENST00000509009 TOMM70O94826 608 aa16.53■□□□□ 0.24
PDPN-208ENST00000509009 PRELPP51888 382 aa16.53■□□□□ 0.24
PDPN-208ENST00000509009 EIF4A1P60842 406 aaKnown RBP16.53■□□□□ 0.24
PDPN-208ENST00000509009 RASSF7Q02833 373 aa16.53■□□□□ 0.24
PDPN-208ENST00000509009 CNBD1Q8NA66 436 aa16.53■□□□□ 0.24
PDPN-208ENST00000509009 RGL2O15211 777 aa16.52■□□□□ 0.24
PDPN-208ENST00000509009 LMNB1P20700 586 aa16.52■□□□□ 0.24
PDPN-208ENST00000509009 MAPK8IP3Q9UPT6 1336 aa16.51■□□□□ 0.23
PDPN-208ENST00000509009 NPHP1O15259 732 aa16.51■□□□□ 0.23
PDPN-208ENST00000509009 SRGNP10124 158 aa16.51■□□□□ 0.23
PDPN-208ENST00000509009 NBPF5PQ86XG9 351 aaPredicted RBP16.51■□□□□ 0.23
PDPN-208ENST00000509009 ZNF652Q9Y2D9 606 aa16.51■□□□□ 0.23
PDPN-208ENST00000509009 KDM2BQ8NHM5 1336 aa16.5■□□□□ 0.23
PDPN-208ENST00000509009 NFKBIEO00221 500 aa16.5■□□□□ 0.23
PDPN-208ENST00000509009 C21orf2O43822 256 aa16.5■□□□□ 0.23
PDPN-208ENST00000509009 RIPK4P57078 832 aa16.5■□□□□ 0.23
PDPN-208ENST00000509009 ST5P78524 1137 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms