RNA–Protein interactions for RNA: ENST00000508499.5

USP46-207, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 2 BASIC

Gene USP46, Length 1,419 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-207ENST00000508499 DUSP27Q5VZP5 1158 aa11.24□□□□□ -0.61
USP46-207ENST00000508499 VSIG10Q8N0Z9 540 aa11.24□□□□□ -0.61
USP46-207ENST00000508499 C5P01031 1676 aa11.24□□□□□ -0.61
USP46-207ENST00000508499 CCDC125Q86Z20 511 aa11.23□□□□□ -0.61
USP46-207ENST00000508499 SMARCC1Q92922 1105 aaPredicted RBP11.23□□□□□ -0.61
USP46-207ENST00000508499 ZNF428Q96B54 188 aa11.23□□□□□ -0.61
USP46-207ENST00000508499 MBIPQ9NS73 344 aa11.23□□□□□ -0.61
USP46-207ENST00000508499 FANCIQ9NVI1 1328 aa11.23□□□□□ -0.61
USP46-207ENST00000508499 PLSCR1O15162 318 aa11.22□□□□□ -0.61
USP46-207ENST00000508499 CHMP4AQ9BY43 222 aa11.22□□□□□ -0.61
USP46-207ENST00000508499 EIF4A1P60842 406 aaKnown RBP11.21□□□□□ -0.61
USP46-207ENST00000508499 ATG3Q9NT62 314 aa11.21□□□□□ -0.61
USP46-207ENST00000508499 TSPYL4Q9UJ04 414 aa11.21□□□□□ -0.61
USP46-207ENST00000508499 SALL2Q9Y467 1007 aaPredicted RBP11.21□□□□□ -0.61
USP46-207ENST00000508499 KCNQ2O43526 872 aa11.2□□□□□ -0.62
USP46-207ENST00000508499 POTEGQ6S5H5 508 aa11.2□□□□□ -0.62
USP46-207ENST00000508499 CDCA7LQ96GN5 454 aa11.2□□□□□ -0.62
USP46-207ENST00000508499 QSER1Q2KHR3 1735 aa11.2□□□□□ -0.62
USP46-207ENST00000508499 POTEB2H3BUK9 544 aa11.19□□□□□ -0.62
USP46-207ENST00000508499 GALR2O43603 387 aaPredicted RBP11.19□□□□□ -0.62
USP46-207ENST00000508499 FAM182BQ5T319 152 aa11.19□□□□□ -0.62
USP46-207ENST00000508499 TTC5Q8N0Z6 440 aa11.19□□□□□ -0.62
USP46-207ENST00000508499 ACSBG1Q96GR2 724 aa11.19□□□□□ -0.62
USP46-207ENST00000508499 FMNL2Q96PY5 1086 aa11.19□□□□□ -0.62
USP46-207ENST00000508499 TEX13AQ9BXU3 409 aaPredicted RBP11.19□□□□□ -0.62
USP46-207ENST00000508499 PCDH10Q9P2E7 1040 aa11.19□□□□□ -0.62
USP46-207ENST00000508499 PALLDQ8WX93 1383 aa11.19□□□□□ -0.62
USP46-207ENST00000508499 GIGYF1O75420 1035 aaPredicted RBP11.18□□□□□ -0.62
USP46-207ENST00000508499 ZNF496Q96IT1 587 aaPredicted RBP11.18□□□□□ -0.62
USP46-207ENST00000508499 ASAP1Q9ULH1 1129 aa11.18□□□□□ -0.62
USP46-207ENST00000508499 MYH14Q7Z406 1995 aaKnown RBP11.18□□□□□ -0.62
USP46-207ENST00000508499 ERBB4Q15303 1308 aa11.18□□□□□ -0.62
USP46-207ENST00000508499 SNRPA1P09661 255 aaKnown RBP11.18□□□□□ -0.62
USP46-207ENST00000508499 SLC27A3Q5K4L6 730 aa11.18□□□□□ -0.62
USP46-207ENST00000508499 TSR2Q969E8 191 aaKnown RBP11.18□□□□□ -0.62
USP46-207ENST00000508499 SYTL4Q96C24 671 aaPredicted RBP11.18□□□□□ -0.62
USP46-207ENST00000508499 C4BP0C0L5 1744 aa11.17□□□□□ -0.62
USP46-207ENST00000508499 SENP3-EIF4A1A0A087X0R7 540 aa11.17□□□□□ -0.62
USP46-207ENST00000508499 LOC102724428A0A0B4J2F2 783 aa11.17□□□□□ -0.62
USP46-207ENST00000508499 TRIM37O94972 964 aa11.17□□□□□ -0.62
USP46-207ENST00000508499 BRPF1P55201 1214 aaPredicted RBP11.17□□□□□ -0.62
USP46-207ENST00000508499 SIK1P57059 783 aa11.17□□□□□ -0.62
USP46-207ENST00000508499 SLC39A6Q13433 755 aa11.17□□□□□ -0.62
USP46-207ENST00000508499 YTHDC1Q96MU7 727 aaKnown RBP11.17□□□□□ -0.62
USP46-207ENST00000508499 MIS18AQ9NYP9 233 aa11.17□□□□□ -0.62
USP46-207ENST00000508499 UBR3Q6ZT12 1888 aa11.16□□□□□ -0.62
USP46-207ENST00000508499 NUP188Q5SRE5 1749 aa11.16□□□□□ -0.62
USP46-207ENST00000508499 KCNQ3O43525 872 aa11.16□□□□□ -0.62
USP46-207ENST00000508499 VAMP4O75379 141 aa11.16□□□□□ -0.62
USP46-207ENST00000508499 PTF1AQ7RTS3 328 aa11.16□□□□□ -0.62
USP46-207ENST00000508499 LAS1LQ9Y4W2 734 aaKnown RBP11.16□□□□□ -0.62
USP46-207ENST00000508499 N4BP2Q86UW6 1770 aaPredicted RBP11.15□□□□□ -0.62
USP46-207ENST00000508499 EXOSC9Q06265 439 aaKnown RBP11.15□□□□□ -0.62
USP46-207ENST00000508499 TWISTNBQ3B726 338 aaPredicted RBP11.15□□□□□ -0.62
USP46-207ENST00000508499 ALDH1L2Q3SY69 923 aa11.15□□□□□ -0.62
USP46-207ENST00000508499 C8orf58Q8NAV2 365 aa11.15□□□□□ -0.62
USP46-207ENST00000508499 SLC4A9Q96Q91 983 aa11.15□□□□□ -0.62
USP46-207ENST00000508499 RC3H1Q5TC82 1133 aaKnown RBP11.14□□□□□ -0.63
USP46-207ENST00000508499 CNTNAP4Q9C0A0 1308 aa11.13□□□□□ -0.63
USP46-207ENST00000508499 STARD3NLO95772 234 aa11.13□□□□□ -0.63
USP46-207ENST00000508499 TSPYL6Q8N831 410 aa11.13□□□□□ -0.63
USP46-207ENST00000508499 CAMKK2Q96RR4 588 aa11.13□□□□□ -0.63
USP46-207ENST00000508499 TUBGCP6Q96RT7 1819 aa11.13□□□□□ -0.63
USP46-207ENST00000508499 PTCD1O75127 700 aaKnown RBP11.12□□□□□ -0.63
USP46-207ENST00000508499 APBA3O96018 575 aa11.12□□□□□ -0.63
USP46-207ENST00000508499 CYP19A1P11511 503 aaPredicted RBP11.12□□□□□ -0.63
USP46-207ENST00000508499 CCDC30Q5VVM6 783 aa11.12□□□□□ -0.63
USP46-207ENST00000508499 PROM2Q8N271 834 aa11.12□□□□□ -0.63
USP46-207ENST00000508499 BCORQ6W2J9 1755 aa11.12□□□□□ -0.63
USP46-207ENST00000508499 C4AP0C0L4 1744 aa11.12□□□□□ -0.63
USP46-207ENST00000508499 RGL2O15211 777 aa11.11□□□□□ -0.63
USP46-207ENST00000508499 ATP6V1AP38606 617 aa11.11□□□□□ -0.63
USP46-207ENST00000508499 BAG6P46379 1132 aa11.11□□□□□ -0.63
USP46-207ENST00000508499 SF3B2Q13435 895 aaKnown RBP11.11□□□□□ -0.63
USP46-207ENST00000508499 TXNRD1Q16881 649 aa11.11□□□□□ -0.63
USP46-207ENST00000508499 KRT24Q2M2I5 525 aa11.11□□□□□ -0.63
USP46-207ENST00000508499 CREBZFQ9NS37 354 aa11.11□□□□□ -0.63
USP46-207ENST00000508499 DBF4Q9UBU7 674 aaPredicted RBP11.11□□□□□ -0.63
USP46-207ENST00000508499 CCNL1Q9UK58 526 aaPredicted RBP11.11□□□□□ -0.63
USP46-207ENST00000508499 USP16Q9Y5T5 823 aa11.11□□□□□ -0.63
USP46-207ENST00000508499 RARSP54136 660 aaKnown RBP11.1□□□□□ -0.63
USP46-207ENST00000508499 ITPK1Q13572 414 aa11.1□□□□□ -0.63
USP46-207ENST00000508499 HDGFL1Q5TGJ6 251 aa11.1□□□□□ -0.63
USP46-207ENST00000508499 LRP10Q7Z4F1 713 aa11.1□□□□□ -0.63
USP46-207ENST00000508499 DNAJC10Q8IXB1 793 aa11.1□□□□□ -0.63
USP46-207ENST00000508499 UPF1Q92900 1129 aaKnown RBP eCLIP11.1□□□□□ -0.63
USP46-207ENST00000508499 DDX21Q9NR30 783 aaKnown RBP eCLIP11.1□□□□□ -0.63
USP46-207ENST00000508499 LRRC4BQ9NT99 713 aa11.1□□□□□ -0.63
USP46-207ENST00000508499 IBTKQ9P2D0 1353 aaPredicted RBP11.1□□□□□ -0.63
USP46-207ENST00000508499 ANKRD36CQ5JPF3 1778 aa11.1□□□□□ -0.63
USP46-207ENST00000508499 IL6STP40189 918 aaPredicted RBP11.09□□□□□ -0.63
USP46-207ENST00000508499 PDIA6Q15084 440 aa11.09□□□□□ -0.63
USP46-207ENST00000508499 HYPKQ9NX55 129 aa11.09□□□□□ -0.63
USP46-207ENST00000508499 SCN7AQ01118 1682 aa11.09□□□□□ -0.63
USP46-207ENST00000508499 ARFGEF2Q9Y6D5 1785 aa11.09□□□□□ -0.63
USP46-207ENST00000508499 NUP98P52948 1817 aa11.09□□□□□ -0.63
USP46-207ENST00000508499 PRAMEF22A3QJZ6 481 aa11.09□□□□□ -0.63
USP46-207ENST00000508499 INTS5Q6P9B9 1019 aaKnown RBP11.09□□□□□ -0.63
USP46-207ENST00000508499 LINC00116Q8NCU8 138 aa11.09□□□□□ -0.63
USP46-207ENST00000508499 ARHGAP45Q92619 1136 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms