RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 CRKLP46109 303 aaKnown RBP15.39■□□□□ 0.05
CUX1-210ENST00000497815 ZNF827Q17R98 1081 aa15.39■□□□□ 0.05
CUX1-210ENST00000497815 AK7Q96M32 723 aa15.39■□□□□ 0.05
CUX1-210ENST00000497815 TEX13AQ9BXU3 409 aaPredicted RBP15.39■□□□□ 0.05
CUX1-210ENST00000497815 ANO8Q9HCE9 1232 aaPredicted RBP15.39■□□□□ 0.05
CUX1-210ENST00000497815 ZNF831Q5JPB2 1677 aa15.38■□□□□ 0.05
CUX1-210ENST00000497815 C4BP0C0L5 1744 aa15.38■□□□□ 0.05
CUX1-210ENST00000497815 A1BGP04217 495 aa15.38■□□□□ 0.05
CUX1-210ENST00000497815 CANXP27824 592 aaKnown RBP15.38■□□□□ 0.05
CUX1-210ENST00000497815 PIP4K2AP48426 406 aaPredicted RBP15.38■□□□□ 0.05
CUX1-210ENST00000497815 CCDC87Q9NVE4 849 aa15.38■□□□□ 0.05
CUX1-210ENST00000497815 STK32BQ9NY57 414 aa15.38■□□□□ 0.05
CUX1-210ENST00000497815 COL5A3P25940 1745 aaPredicted RBP15.37■□□□□ 0.05
CUX1-210ENST00000497815 CICQ96RK0 1608 aaPredicted RBP15.37■□□□□ 0.05
CUX1-210ENST00000497815 GNPATO15228 680 aa15.37■□□□□ 0.05
CUX1-210ENST00000497815 TWISTNBQ3B726 338 aaPredicted RBP15.37■□□□□ 0.05
CUX1-210ENST00000497815 HDGFL1Q5TGJ6 251 aa15.37■□□□□ 0.05
CUX1-210ENST00000497815 NBPF14Q5TI25 921 aa15.37■□□□□ 0.05
CUX1-210ENST00000497815 INTS5Q6P9B9 1019 aaKnown RBP15.37■□□□□ 0.05
CUX1-210ENST00000497815 SMIM5Q71RC9 77 aa15.37■□□□□ 0.05
CUX1-210ENST00000497815 TRMT2AQ8IZ69 625 aaKnown RBP15.37■□□□□ 0.05
CUX1-210ENST00000497815 TAF1LQ8IZX4 1826 aa15.37■□□□□ 0.05
CUX1-210ENST00000497815 CNTNAP4Q9C0A0 1308 aa15.37■□□□□ 0.05
CUX1-210ENST00000497815 PHF14O94880 888 aa15.36■□□□□ 0.05
CUX1-210ENST00000497815 AKT1S1Q96B36 256 aa15.36■□□□□ 0.05
CUX1-210ENST00000497815 TFCP2L1Q9NZI6 479 aa15.36■□□□□ 0.05
CUX1-210ENST00000497815 ZBTB1Q9Y2K1 713 aa15.36■□□□□ 0.05
CUX1-210ENST00000497815 ZNF330Q9Y3S2 320 aaPredicted RBP15.36■□□□□ 0.05
CUX1-210ENST00000497815 LAMB4A4D0S4 1761 aa15.36■□□□□ 0.05
CUX1-210ENST00000497815 TCERG1O14776 1098 aaKnown RBP15.35■□□□□ 0.05
CUX1-210ENST00000497815 HOXB7P09629 217 aa15.35■□□□□ 0.05
CUX1-210ENST00000497815 HMGB2P26583 209 aaKnown RBP15.35■□□□□ 0.05
CUX1-210ENST00000497815 SLC15A2Q16348 729 aa15.35■□□□□ 0.05
CUX1-210ENST00000497815 PPP4R3CPQ6ZMV5 832 aa15.35■□□□□ 0.05
CUX1-210ENST00000497815 MYL6BP14649 208 aa15.34■□□□□ 0.05
CUX1-210ENST00000497815 RC3H1Q5TC82 1133 aaKnown RBP15.34■□□□□ 0.05
CUX1-210ENST00000497815 AMIGO3Q86WK7 504 aa15.34■□□□□ 0.05
CUX1-210ENST00000497815 NBPF26B4DH59 902 aa15.33■□□□□ 0.04
CUX1-210ENST00000497815 VAMP4O75379 141 aa15.33■□□□□ 0.04
CUX1-210ENST00000497815 ANXA1P04083 346 aa15.33■□□□□ 0.04
CUX1-210ENST00000497815 R3HDM1Q15032 1099 aaKnown RBP15.33■□□□□ 0.04
CUX1-210ENST00000497815 NBPF10Q6P3W6 841 aaKnown RBP15.33■□□□□ 0.04
CUX1-210ENST00000497815 NBPF15Q8N660 670 aa15.33■□□□□ 0.04
CUX1-210ENST00000497815 ARXQ96QS3 562 aa15.33■□□□□ 0.04
CUX1-210ENST00000497815 CHPF2Q9P2E5 772 aa15.33■□□□□ 0.04
CUX1-210ENST00000497815 RTCBQ9Y3I0 505 aaKnown RBP15.33■□□□□ 0.04
CUX1-210ENST00000497815 PSDA5PKW4 1024 aaPredicted RBP15.32■□□□□ 0.04
CUX1-210ENST00000497815 RPS6KA4O75676 772 aa15.32■□□□□ 0.04
CUX1-210ENST00000497815 PROSER3Q2NL68 480 aa15.32■□□□□ 0.04
CUX1-210ENST00000497815 SOS1Q07889 1333 aaPredicted RBP15.32■□□□□ 0.04
CUX1-210ENST00000497815 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.31■□□□□ 0.04
CUX1-210ENST00000497815 CCDC30Q5VVM6 783 aa15.31■□□□□ 0.04
CUX1-210ENST00000497815 NPM2Q86SE8 214 aaKnown RBP15.31■□□□□ 0.04
CUX1-210ENST00000497815 IL6STP40189 918 aaPredicted RBP15.3■□□□□ 0.04
CUX1-210ENST00000497815 PDIA6Q15084 440 aa15.3■□□□□ 0.04
CUX1-210ENST00000497815 ERBB4Q15303 1308 aa15.3■□□□□ 0.04
CUX1-210ENST00000497815 TRAPPC3LQ5T215 181 aa15.3■□□□□ 0.04
CUX1-210ENST00000497815 PNPLA7Q6ZV29 1317 aa15.3■□□□□ 0.04
CUX1-210ENST00000497815 STK31Q9BXU1 1019 aa15.3■□□□□ 0.04
CUX1-210ENST00000497815 DBF4Q9UBU7 674 aaPredicted RBP15.3■□□□□ 0.04
CUX1-210ENST00000497815 MYH14Q7Z406 1995 aaKnown RBP15.29■□□□□ 0.04
CUX1-210ENST00000497815 COL15A1P39059 1388 aa15.29■□□□□ 0.04
CUX1-210ENST00000497815 SSFA2P28290 1259 aa15.29■□□□□ 0.04
CUX1-210ENST00000497815 EIF5P55010 431 aaKnown RBP15.29■□□□□ 0.04
CUX1-210ENST00000497815 COL23A1Q86Y22 540 aaPredicted RBP15.29■□□□□ 0.04
CUX1-210ENST00000497815 ARHGEF1Q92888 912 aaKnown RBP15.29■□□□□ 0.04
CUX1-210ENST00000497815 CHMP4AQ9BY43 222 aa15.29■□□□□ 0.04
CUX1-210ENST00000497815 DDX21Q9NR30 783 aaKnown RBP eCLIP15.29■□□□□ 0.041e-7■□□□□ 10.9
CUX1-210ENST00000497815 DCAF8L1A6NGE4 600 aa15.28■□□□□ 0.04
CUX1-210ENST00000497815 RFC4P35249 363 aa15.28■□□□□ 0.04
CUX1-210ENST00000497815 CACNB1Q02641 598 aaPredicted RBP15.28■□□□□ 0.04
CUX1-210ENST00000497815 AIMP1Q12904 312 aaKnown RBP15.28■□□□□ 0.04
CUX1-210ENST00000497815 BCL2L13Q9BXK5 485 aa15.28■□□□□ 0.04
CUX1-210ENST00000497815 PDGFDQ9GZP0 370 aaPredicted RBP15.28■□□□□ 0.04
CUX1-210ENST00000497815 TBC1D2BQ9UPU7 963 aa15.28■□□□□ 0.04
CUX1-210ENST00000497815 UBR3Q6ZT12 1888 aa15.28■□□□□ 0.04
CUX1-210ENST00000497815 TUBGCP6Q96RT7 1819 aa15.28■□□□□ 0.04
CUX1-210ENST00000497815 SLC4A2P04920 1241 aa15.27■□□□□ 0.04
CUX1-210ENST00000497815 FLAD1Q8NFF5 587 aa15.27■□□□□ 0.04
CUX1-210ENST00000497815 XAGE3Q8WTP9 111 aa15.27■□□□□ 0.04
CUX1-210ENST00000497815 PHAXQ9H814 394 aaKnown RBP15.27■□□□□ 0.04
CUX1-210ENST00000497815 HYPKQ9NX55 129 aa15.27■□□□□ 0.04
CUX1-210ENST00000497815 SRP68Q9UHB9 627 aaKnown RBP15.27■□□□□ 0.04
CUX1-210ENST00000497815 A0A087WZG4 1122 aa15.26■□□□□ 0.03
CUX1-210ENST00000497815 CT47B1P0C2W7 299 aaPredicted RBP15.26■□□□□ 0.03
CUX1-210ENST00000497815 TTLL7Q6ZT98 887 aa15.26■□□□□ 0.03
CUX1-210ENST00000497815 LRP10Q7Z4F1 713 aa15.26■□□□□ 0.03
CUX1-210ENST00000497815 DZIP3Q86Y13 1208 aaKnown RBP15.26■□□□□ 0.03
CUX1-210ENST00000497815 SSH1Q8WYL5 1049 aa15.26■□□□□ 0.03
CUX1-210ENST00000497815 ZPR1O75312 459 aa15.25■□□□□ 0.03
CUX1-210ENST00000497815 KIF6Q6ZMV9 814 aa15.25■□□□□ 0.03
CUX1-210ENST00000497815 COPS6Q7L5N1 327 aa15.25■□□□□ 0.03
CUX1-210ENST00000497815 G2E3Q7L622 706 aa15.25■□□□□ 0.03
CUX1-210ENST00000497815 SMC4Q9NTJ3 1288 aa15.25■□□□□ 0.03
CUX1-210ENST00000497815 RARSP54136 660 aaKnown RBP15.24■□□□□ 0.03
CUX1-210ENST00000497815 USPL1Q5W0Q7 1092 aa15.24■□□□□ 0.03
CUX1-210ENST00000497815 ZNF428Q96B54 188 aa15.24■□□□□ 0.03
CUX1-210ENST00000497815 ZBTB3Q9H5J0 574 aa15.24■□□□□ 0.03
CUX1-210ENST00000497815 NARFQ9UHQ1 456 aa15.24■□□□□ 0.03
CUX1-210ENST00000497815 C4AP0C0L4 1744 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms