RNA–Protein interactions for RNA: ENST00000496946.1

SNRNP48-202, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

TSL 2

Gene SNRNP48, Length 2,610 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-202ENST00000496946 TMEM214Q6NUQ4 689 aaKnown RBP4.3□□□□□ -1.72
SNRNP48-202ENST00000496946 NBPF10Q6P3W6 841 aaKnown RBP4.3□□□□□ -1.72
SNRNP48-202ENST00000496946 RAB44Q7Z6P3 723 aaPredicted RBP4.3□□□□□ -1.72
SNRNP48-202ENST00000496946 NBPF15Q8N660 670 aa4.3□□□□□ -1.72
SNRNP48-202ENST00000496946 ZDHHC1Q8WTX9 485 aa4.3□□□□□ -1.72
SNRNP48-202ENST00000496946 SLAIN2Q9P270 581 aa4.3□□□□□ -1.72
SNRNP48-202ENST00000496946 USP35Q9P2H5 1018 aa4.3□□□□□ -1.72
SNRNP48-202ENST00000496946 BRPF3Q9ULD4 1205 aa4.3□□□□□ -1.72
SNRNP48-202ENST00000496946 DCDC2BA2VCK2 349 aa4.29□□□□□ -1.72
SNRNP48-202ENST00000496946 PRMT3O60678 531 aa4.29□□□□□ -1.72
SNRNP48-202ENST00000496946 GNRH1P01148 92 aa4.29□□□□□ -1.72
SNRNP48-202ENST00000496946 ATP4AP20648 1035 aa4.29□□□□□ -1.72
SNRNP48-202ENST00000496946 ITGA6P23229 1130 aa4.29□□□□□ -1.72
SNRNP48-202ENST00000496946 ZNF592Q92610 1267 aa4.29□□□□□ -1.72
SNRNP48-202ENST00000496946 HINFPQ9BQA5 517 aa4.29□□□□□ -1.72
SNRNP48-202ENST00000496946 MTMR7Q9Y216 660 aa4.29□□□□□ -1.72
SNRNP48-202ENST00000496946 NOD1Q9Y239 953 aa4.29□□□□□ -1.72
SNRNP48-202ENST00000496946 EPHA4P54764 986 aa4.29□□□□□ -1.72
SNRNP48-202ENST00000496946 PPARGC1BQ86YN6 1023 aaKnown RBP4.29□□□□□ -1.72
SNRNP48-202ENST00000496946 WWC1Q8IX03 1113 aa4.29□□□□□ -1.72
SNRNP48-202ENST00000496946 FOXD4L4Q8WXT5 416 aaPredicted RBP4.29□□□□□ -1.72
SNRNP48-202ENST00000496946 NGLY1Q96IV0 654 aa4.29□□□□□ -1.72
SNRNP48-202ENST00000496946 PRIMPOLQ96LW4 560 aa4.29□□□□□ -1.72
SNRNP48-202ENST00000496946 DNAAF2Q9NVR5 837 aaKnown RBP4.29□□□□□ -1.72
SNRNP48-202ENST00000496946 HCN4Q9Y3Q4 1203 aa4.29□□□□□ -1.72
SNRNP48-202ENST00000496946 SLC35F4A4IF30 521 aa4.28□□□□□ -1.72
SNRNP48-202ENST00000496946 WASLO00401 505 aaPredicted RBP4.28□□□□□ -1.72
SNRNP48-202ENST00000496946 SLC9A9Q8IVB4 645 aa4.28□□□□□ -1.72
SNRNP48-202ENST00000496946 HSH2DQ96JZ2 352 aa4.28□□□□□ -1.72
SNRNP48-202ENST00000496946 GRIP2Q9C0E4 1043 aa4.28□□□□□ -1.72
SNRNP48-202ENST00000496946 CABP1Q9NZU7 370 aa4.28□□□□□ -1.72
SNRNP48-202ENST00000496946 NAP1L2Q9ULW6 460 aaPredicted RBP4.28□□□□□ -1.72
SNRNP48-202ENST00000496946 ZNF232Q9UNY5 417 aa4.28□□□□□ -1.72
SNRNP48-202ENST00000496946 USP20Q9Y2K6 914 aa4.28□□□□□ -1.72
SNRNP48-202ENST00000496946 A6NJY4 79 aa4.28□□□□□ -1.72
SNRNP48-202ENST00000496946 USP17L15C9J2P7 530 aa4.28□□□□□ -1.72
SNRNP48-202ENST00000496946 USP17L10C9JJH3 530 aa4.28□□□□□ -1.72
SNRNP48-202ENST00000496946 USP17L13C9JLJ4 530 aa4.28□□□□□ -1.72
SNRNP48-202ENST00000496946 USP17L12C9JPN9 530 aa4.28□□□□□ -1.72
SNRNP48-202ENST00000496946 USP17L11C9JVI0 530 aa4.28□□□□□ -1.72
SNRNP48-202ENST00000496946 USP17L21D6R901 530 aa4.28□□□□□ -1.72
SNRNP48-202ENST00000496946 USP17L18D6R9N7 530 aa4.28□□□□□ -1.72
SNRNP48-202ENST00000496946 USP17L22D6RA61 530 aa4.28□□□□□ -1.72
SNRNP48-202ENST00000496946 USP17L17D6RBQ6 530 aa4.28□□□□□ -1.72
SNRNP48-202ENST00000496946 USP17L19D6RCP7 530 aa4.28□□□□□ -1.72
SNRNP48-202ENST00000496946 USP17L20D6RJB6 530 aa4.28□□□□□ -1.72
SNRNP48-202ENST00000496946 SMTNP53814 917 aa4.28□□□□□ -1.72
SNRNP48-202ENST00000496946 USP17L24Q0WX57 530 aa4.28□□□□□ -1.72
SNRNP48-202ENST00000496946 MTMR3Q13615 1198 aa4.28□□□□□ -1.72
SNRNP48-202ENST00000496946 ARSJQ5FYB0 599 aaPredicted RBP4.28□□□□□ -1.72
SNRNP48-202ENST00000496946 L3MBTL2Q969R5 705 aa4.28□□□□□ -1.72
SNRNP48-202ENST00000496946 PSMD1Q99460 953 aa4.28□□□□□ -1.72
SNRNP48-202ENST00000496946 TIMMDC1Q9NPL8 285 aa4.28□□□□□ -1.72
SNRNP48-202ENST00000496946 H3BM21 787 aa4.27□□□□□ -1.73
SNRNP48-202ENST00000496946 SOX11P35716 441 aa4.27□□□□□ -1.73
SNRNP48-202ENST00000496946 NEUROD1Q13562 356 aa4.27□□□□□ -1.73
SNRNP48-202ENST00000496946 MAP7D1Q3KQU3 841 aa4.27□□□□□ -1.73
SNRNP48-202ENST00000496946 TAS1R3Q7RTX0 852 aa4.27□□□□□ -1.73
SNRNP48-202ENST00000496946 TEX2Q8IWB9 1127 aa4.27□□□□□ -1.73
SNRNP48-202ENST00000496946 ZNF280CQ8ND82 737 aa4.27□□□□□ -1.73
SNRNP48-202ENST00000496946 ZNF837Q96EG3 531 aaPredicted RBP4.27□□□□□ -1.73
SNRNP48-202ENST00000496946 CNTNAP3BQ96NU0 1288 aa4.27□□□□□ -1.73
SNRNP48-202ENST00000496946 CNTNAP3Q9BZ76 1288 aa4.27□□□□□ -1.73
SNRNP48-202ENST00000496946 SCHIP1Q9P0W5 487 aaPredicted RBP4.27□□□□□ -1.73
SNRNP48-202ENST00000496946 RNF144AP50876 292 aaPredicted RBP4.27□□□□□ -1.73
SNRNP48-202ENST00000496946 GAS6Q14393 721 aa4.27□□□□□ -1.73
SNRNP48-202ENST00000496946 FAM26DQ5JW98 314 aa4.27□□□□□ -1.73
SNRNP48-202ENST00000496946 TMEM164Q5U3C3 297 aa4.27□□□□□ -1.73
SNRNP48-202ENST00000496946 SCG3Q8WXD2 468 aaKnown RBP4.27□□□□□ -1.73
SNRNP48-202ENST00000496946 ABHD17AQ96GS6 310 aa4.27□□□□□ -1.73
SNRNP48-202ENST00000496946 COL25A1Q9BXS0 654 aaPredicted RBP4.27□□□□□ -1.73
SNRNP48-202ENST00000496946 SRPK2P78362 688 aaKnown RBP4.26□□□□□ -1.73
SNRNP48-202ENST00000496946 TREML4Q6UXN2 200 aa4.26□□□□□ -1.73
SNRNP48-202ENST00000496946 AEBP1Q8IUX7 1158 aa4.26□□□□□ -1.73
SNRNP48-202ENST00000496946 WHAMMQ8TF30 809 aa4.26□□□□□ -1.73
SNRNP48-202ENST00000496946 KIFC2Q96AC6 838 aa4.26□□□□□ -1.73
SNRNP48-202ENST00000496946 NAA30Q147X3 362 aaPredicted RBP4.26□□□□□ -1.73
SNRNP48-202ENST00000496946 RGS22Q8NE09 1264 aa4.26□□□□□ -1.73
SNRNP48-202ENST00000496946 IPO4Q8TEX9 1081 aaKnown RBP4.26□□□□□ -1.73
SNRNP48-202ENST00000496946 CUX2O14529 1486 aa4.26□□□□□ -1.73
SNRNP48-202ENST00000496946 XAGE2Q96GT9 111 aa4.25□□□□□ -1.73
SNRNP48-202ENST00000496946 NOVA2Q9UNW9 492 aaKnown RBP4.25□□□□□ -1.73
SNRNP48-202ENST00000496946 LORP23490 312 aaPredicted RBP4.25□□□□□ -1.73
SNRNP48-202ENST00000496946 FAM69CQ0P6D2 419 aa4.25□□□□□ -1.73
SNRNP48-202ENST00000496946 CNPY4Q8N129 248 aa4.25□□□□□ -1.73
SNRNP48-202ENST00000496946 VRTNQ9H8Y1 702 aa4.25□□□□□ -1.73
SNRNP48-202ENST00000496946 KLK14Q9P0G3 267 aa4.25□□□□□ -1.73
SNRNP48-202ENST00000496946 PPM1GO15355 546 aaPredicted RBP4.25□□□□□ -1.73
SNRNP48-202ENST00000496946 TMED8Q6PL24 325 aaPredicted RBP4.25□□□□□ -1.73
SNRNP48-202ENST00000496946 LRRC69Q6ZNQ3 347 aa4.25□□□□□ -1.73
SNRNP48-202ENST00000496946 RHBDD1Q8TEB9 315 aa4.25□□□□□ -1.73
SNRNP48-202ENST00000496946 CCDC97Q96F63 343 aaPredicted RBP4.25□□□□□ -1.73
SNRNP48-202ENST00000496946 PLCD4Q9BRC7 762 aa4.25□□□□□ -1.73
SNRNP48-202ENST00000496946 SAP130Q9H0E3 1048 aa4.25□□□□□ -1.73
SNRNP48-202ENST00000496946 STRN4Q9NRL3 753 aa4.25□□□□□ -1.73
SNRNP48-202ENST00000496946 ARID4BQ4LE39 1312 aaPredicted RBP4.24□□□□□ -1.73
SNRNP48-202ENST00000496946 CD33P20138 364 aa4.24□□□□□ -1.73
SNRNP48-202ENST00000496946 FKBP5Q13451 457 aaPredicted RBP4.24□□□□□ -1.73
SNRNP48-202ENST00000496946 UBAP2LQ14157 1087 aaKnown RBP4.24□□□□□ -1.73
SNRNP48-202ENST00000496946 ANKMY2Q8IV38 441 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms