RNA–Protein interactions for RNA: ENST00000496567.5

C9orf3-222, Transcript of chromosome 9 open reading frame 3, human

TSL 5

Gene C9orf3, Length 1,575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
C9orf3-222	ENST00000496567	CYP19A1	P11511	503 aa	Predicted RBP	28.03	■■■□□ 2.08
C9orf3-222	ENST00000496567	EIF2S2	P20042	333 aa	Known RBP	28.03	■■■□□ 2.08
C9orf3-222	ENST00000496567	HDGFL1	Q5TGJ6	251 aa		28.03	■■■□□ 2.08
C9orf3-222	ENST00000496567	TAF1L	Q8IZX4	1826 aa		28.03	■■■□□ 2.08
C9orf3-222	ENST00000496567	LINC00116	Q8NCU8	138 aa		28.03	■■■□□ 2.08
C9orf3-222	ENST00000496567	COL5A3	P25940	1745 aa	Predicted RBP	28.02	■■■□□ 2.08
C9orf3-222	ENST00000496567	ZNF428	Q96B54	188 aa		28.02	■■■□□ 2.08
C9orf3-222	ENST00000496567	RREB1	Q92766	1687 aa		28.01	■■■□□ 2.07
C9orf3-222	ENST00000496567	RC3H1	Q5TC82	1133 aa	Known RBP	28	■■■□□ 2.07
C9orf3-222	ENST00000496567	CCDC30	Q5VVM6	783 aa		28	■■■□□ 2.07
C9orf3-222	ENST00000496567	ERBB4	Q15303	1308 aa		28	■■■□□ 2.07
C9orf3-222	ENST00000496567	CNTNAP4	Q9C0A0	1308 aa		28	■■■□□ 2.07
C9orf3-222	ENST00000496567	CRKL	P46109	303 aa	Known RBP	27.99	■■■□□ 2.07
C9orf3-222	ENST00000496567	CCDC87	Q9NVE4	849 aa		27.99	■■■□□ 2.07
C9orf3-222	ENST00000496567	NECTIN2	Q92692	538 aa		27.98	■■■□□ 2.07
C9orf3-222	ENST00000496567	C4B	P0C0L5	1744 aa		27.97	■■■□□ 2.07
C9orf3-222	ENST00000496567	A1BG	P04217	495 aa		27.97	■■■□□ 2.07
C9orf3-222	ENST00000496567	AK7	Q96M32	723 aa		27.96	■■■□□ 2.07
C9orf3-222	ENST00000496567	STK31	Q9BXU1	1019 aa		27.96	■■■□□ 2.07
C9orf3-222	ENST00000496567	DBF4	Q9UBU7	674 aa	Predicted RBP	27.96	■■■□□ 2.07
C9orf3-222	ENST00000496567	INTS5	Q6P9B9	1019 aa	Known RBP	27.95	■■■□□ 2.07
C9orf3-222	ENST00000496567	NUP188	Q5SRE5	1749 aa		27.95	■■■□□ 2.06
C9orf3-222	ENST00000496567	ZBTB1	Q9Y2K1	713 aa		27.94	■■■□□ 2.06
C9orf3-222	ENST00000496567	DDX21	Q9NR30	783 aa	Known RBP eCLIP	27.94	■■■□□ 2.06
C9orf3-222	ENST00000496567	CHPF2	Q9P2E5	772 aa		27.94	■■■□□ 2.06
C9orf3-222	ENST00000496567	CANX	P27824	592 aa	Known RBP	27.93	■■■□□ 2.06
C9orf3-222	ENST00000496567	ALDH1L2	Q3SY69	923 aa		27.93	■■■□□ 2.06
C9orf3-222	ENST00000496567	MYH14	Q7Z406	1995 aa	Known RBP	27.92	■■■□□ 2.06
C9orf3-222	ENST00000496567	GNPAT	O15228	680 aa		27.91	■■■□□ 2.06
C9orf3-222	ENST00000496567	RPS6KA4	O75676	772 aa		27.91	■■■□□ 2.06
C9orf3-222	ENST00000496567	IL6ST	P40189	918 aa	Predicted RBP	27.91	■■■□□ 2.06
C9orf3-222	ENST00000496567	PDIA6	Q15084	440 aa		27.91	■■■□□ 2.06
C9orf3-222	ENST00000496567	NBPF14	Q5TI25	921 aa		27.91	■■■□□ 2.06
C9orf3-222	ENST00000496567	NPM2	Q86SE8	214 aa	Known RBP	27.91	■■■□□ 2.06
C9orf3-222	ENST00000496567	AKT1S1	Q96B36	256 aa		27.91	■■■□□ 2.06
C9orf3-222	ENST00000496567	NBPF26	B4DH59	902 aa		27.9	■■■□□ 2.06
C9orf3-222	ENST00000496567	NBPF10	Q6P3W6	841 aa	Known RBP	27.9	■■■□□ 2.06
C9orf3-222	ENST00000496567	NBPF15	Q8N660	670 aa		27.9	■■■□□ 2.06
C9orf3-222	ENST00000496567	HYPK	Q9NX55	129 aa		27.9	■■■□□ 2.06
C9orf3-222	ENST00000496567	STK32B	Q9NY57	414 aa		27.9	■■■□□ 2.06
C9orf3-222	ENST00000496567	RTCB	Q9Y3I0	505 aa	Known RBP	27.9	■■■□□ 2.06
C9orf3-222	ENST00000496567	MYL6B	P14649	208 aa		27.9	■■■□□ 2.06
C9orf3-222	ENST00000496567	TCERG1	O14776	1098 aa	Known RBP	27.89	■■■□□ 2.05
C9orf3-222	ENST00000496567	SLC4A2	P04920	1241 aa		27.89	■■■□□ 2.05
C9orf3-222	ENST00000496567	PIP4K2A	P48426	406 aa	Predicted RBP	27.89	■■■□□ 2.05
C9orf3-222	ENST00000496567	RARS	P54136	660 aa	Known RBP	27.89	■■■□□ 2.05
C9orf3-222	ENST00000496567	SOCS7	O14512	581 aa		27.88	■■■□□ 2.05
C9orf3-222	ENST00000496567	ZNF827	Q17R98	1081 aa		27.88	■■■□□ 2.05
C9orf3-222	ENST00000496567	SSH1	Q8WYL5	1049 aa		27.88	■■■□□ 2.05
C9orf3-222	ENST00000496567	TFCP2L1	Q9NZI6	479 aa		27.88	■■■□□ 2.05
C9orf3-222	ENST00000496567	EIF5	P55010	431 aa	Known RBP	27.87	■■■□□ 2.05
C9orf3-222	ENST00000496567	SLC15A2	Q16348	729 aa		27.87	■■■□□ 2.05
C9orf3-222	ENST00000496567	PROSER3	Q2NL68	480 aa		27.87	■■■□□ 2.05
C9orf3-222	ENST00000496567	CACNA1F	O60840	1977 aa		27.87	■■■□□ 2.05
C9orf3-222	ENST00000496567	ANXA1	P04083	346 aa		27.86	■■■□□ 2.05
C9orf3-222	ENST00000496567	SMC4	Q9NTJ3	1288 aa		27.86	■■■□□ 2.05
C9orf3-222	ENST00000496567	ZNF330	Q9Y3S2	320 aa	Predicted RBP	27.86	■■■□□ 2.05
C9orf3-222	ENST00000496567	ADRA2B	P18089	450 aa		27.86	■■■□□ 2.05
C9orf3-222	ENST00000496567	SSFA2	P28290	1259 aa		27.86	■■■□□ 2.05
C9orf3-222	ENST00000496567	ANO8	Q9HCE9	1232 aa	Predicted RBP	27.86	■■■□□ 2.05
C9orf3-222	ENST00000496567	UBR3	Q6ZT12	1888 aa		27.85	■■■□□ 2.05
C9orf3-222	ENST00000496567	RCAN3	Q9UKA8	241 aa		27.85	■■■□□ 2.05
C9orf3-222	ENST00000496567		A0A087WZG4	1122 aa		27.84	■■■□□ 2.05
C9orf3-222	ENST00000496567	TRAPPC3L	Q5T215	181 aa		27.84	■■■□□ 2.05
C9orf3-222	ENST00000496567	LRP10	Q7Z4F1	713 aa		27.84	■■■□□ 2.05
C9orf3-222	ENST00000496567	MRPL50	Q8N5N7	158 aa	Known RBP	27.84	■■■□□ 2.05
C9orf3-222	ENST00000496567	FLAD1	Q8NFF5	587 aa		27.84	■■■□□ 2.05
C9orf3-222	ENST00000496567	BCL2L13	Q9BXK5	485 aa		27.84	■■■□□ 2.05
C9orf3-222	ENST00000496567	COL15A1	P39059	1388 aa		27.83	■■■□□ 2.05
C9orf3-222	ENST00000496567	BRPF1	P55201	1214 aa	Predicted RBP	27.82	■■■□□ 2.04
C9orf3-222	ENST00000496567	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	27.82	■■■□□ 2.04
C9orf3-222	ENST00000496567	PHF14	O94880	888 aa		27.82	■■■□□ 2.04
C9orf3-222	ENST00000496567	PHAX	Q9H814	394 aa	Known RBP	27.82	■■■□□ 2.04
C9orf3-222	ENST00000496567	COPS6	Q7L5N1	327 aa		27.81	■■■□□ 2.04
C9orf3-222	ENST00000496567	XAGE3	Q8WTP9	111 aa		27.81	■■■□□ 2.04
C9orf3-222	ENST00000496567	AIMP1	Q12904	312 aa	Known RBP	27.8	■■■□□ 2.04
C9orf3-222	ENST00000496567	AMIGO3	Q86WK7	504 aa		27.8	■■■□□ 2.04
C9orf3-222	ENST00000496567	ARX	Q96QS3	562 aa		27.8	■■■□□ 2.04
C9orf3-222	ENST00000496567	BCAR3	O75815	825 aa		27.79	■■■□□ 2.04
C9orf3-222	ENST00000496567	FLII	Q13045	1269 aa		27.79	■■■□□ 2.04
C9orf3-222	ENST00000496567	DZIP3	Q86Y13	1208 aa	Known RBP	27.79	■■■□□ 2.04
C9orf3-222	ENST00000496567	ARHGEF1	Q92888	912 aa	Known RBP	27.79	■■■□□ 2.04
C9orf3-222	ENST00000496567	KIF16B	Q96L93	1317 aa		27.79	■■■□□ 2.04
C9orf3-222	ENST00000496567	DDX58	O95786	925 aa	Known RBP	27.78	■■■□□ 2.04
C9orf3-222	ENST00000496567	RFC4	P35249	363 aa		27.78	■■■□□ 2.04
C9orf3-222	ENST00000496567	KIF6	Q6ZMV9	814 aa		27.78	■■■□□ 2.04
C9orf3-222	ENST00000496567	G2E3	Q7L622	706 aa		27.78	■■■□□ 2.04
C9orf3-222	ENST00000496567	QSER1	Q2KHR3	1735 aa		27.78	■■■□□ 2.04
C9orf3-222	ENST00000496567	SMIM5	Q71RC9	77 aa		27.77	■■■□□ 2.04
C9orf3-222	ENST00000496567	TUBGCP6	Q96RT7	1819 aa		27.77	■■■□□ 2.04
C9orf3-222	ENST00000496567	PNPLA7	Q6ZV29	1317 aa		27.77	■■■□□ 2.04
C9orf3-222	ENST00000496567	CENPB	P07199	599 aa	Predicted RBP	27.77	■■■□□ 2.04
C9orf3-222	ENST00000496567	TTLL7	Q6ZT98	887 aa		27.76	■■■□□ 2.03
C9orf3-222	ENST00000496567	TBC1D2B	Q9UPU7	963 aa		27.76	■■■□□ 2.03
C9orf3-222	ENST00000496567	PTPRC	P08575	1304 aa		27.75	■■■□□ 2.03
C9orf3-222	ENST00000496567	ZPR1	O75312	459 aa		27.75	■■■□□ 2.03
C9orf3-222	ENST00000496567	FKBP5	Q13451	457 aa	Predicted RBP	27.75	■■■□□ 2.03
C9orf3-222	ENST00000496567	NARF	Q9UHQ1	456 aa		27.75	■■■□□ 2.03
C9orf3-222	ENST00000496567	ANKRD13D	Q6ZTN6	518 aa		27.74	■■■□□ 2.03
C9orf3-222	ENST00000496567	COL23A1	Q86Y22	540 aa	Predicted RBP	27.74	■■■□□ 2.03

Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms