RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 PRAMEF22A3QJZ6 481 aa13.69□□□□□ -0.22
CHMP3-209ENST00000494623 GOLGA6L22H0YM25 854 aa13.69□□□□□ -0.22
CHMP3-209ENST00000494623 NUCB2P80303 420 aa13.69□□□□□ -0.22
CHMP3-209ENST00000494623 PKP1Q13835 747 aa13.69□□□□□ -0.22
CHMP3-209ENST00000494623 RGPD2P0DJD1 1756 aa13.69□□□□□ -0.22
CHMP3-209ENST00000494623 PTMSP20962 102 aa13.68□□□□□ -0.22
CHMP3-209ENST00000494623 MCCP23508 829 aa13.68□□□□□ -0.22
CHMP3-209ENST00000494623 PROSER3Q2NL68 480 aa13.68□□□□□ -0.22
CHMP3-209ENST00000494623 PALD1Q9ULE6 856 aa13.68□□□□□ -0.22
CHMP3-209ENST00000494623 MAP3K2Q9Y2U5 619 aa13.68□□□□□ -0.22
CHMP3-209ENST00000494623 GIGYF1O75420 1035 aaPredicted RBP13.68□□□□□ -0.22
CHMP3-209ENST00000494623 CWC22Q9HCG8 908 aaKnown RBP13.68□□□□□ -0.22
CHMP3-209ENST00000494623 OS9Q13438 667 aaPredicted RBP13.67□□□□□ -0.22
CHMP3-209ENST00000494623 MCTP1Q6DN14 999 aa13.67□□□□□ -0.22
CHMP3-209ENST00000494623 KIF1BPQ96EK5 621 aa13.67□□□□□ -0.22
CHMP3-209ENST00000494623 C9orf78Q9NZ63 289 aaPredicted RBP13.67□□□□□ -0.22
CHMP3-209ENST00000494623 MRE11P49959 708 aa13.67□□□□□ -0.22
CHMP3-209ENST00000494623 ADCY9O60503 1353 aa13.67□□□□□ -0.22
CHMP3-209ENST00000494623 PXDNQ92626 1479 aa13.67□□□□□ -0.22
CHMP3-209ENST00000494623 NOL8Q76FK4 1167 aaKnown RBP13.66□□□□□ -0.22
CHMP3-209ENST00000494623 AIMP1Q12904 312 aaKnown RBP13.66□□□□□ -0.22
CHMP3-209ENST00000494623 CLEC17AQ6ZS10 378 aa13.66□□□□□ -0.22
CHMP3-209ENST00000494623 GRPEL1Q9HAV7 217 aa13.66□□□□□ -0.22
CHMP3-209ENST00000494623 DDX49Q9Y6V7 483 aaKnown RBP13.66□□□□□ -0.22
CHMP3-209ENST00000494623 AK9Q5TCS8 1911 aa13.66□□□□□ -0.22
CHMP3-209ENST00000494623 CWF19L2Q2TBE0 894 aaKnown RBP13.65□□□□□ -0.22
CHMP3-209ENST00000494623 KSR2Q6VAB6 950 aa13.65□□□□□ -0.22
CHMP3-209ENST00000494623 TMX3Q96JJ7 454 aa13.65□□□□□ -0.22
CHMP3-209ENST00000494623 IL25Q9H293 177 aa13.65□□□□□ -0.22
CHMP3-209ENST00000494623 MED1Q15648 1581 aaPredicted RBP13.65□□□□□ -0.22
CHMP3-209ENST00000494623 GAS2L3Q86XJ1 694 aa13.65□□□□□ -0.22
CHMP3-209ENST00000494623 DDX17Q92841 729 aaKnown RBP13.65□□□□□ -0.22
CHMP3-209ENST00000494623 AOX1Q06278 1338 aa13.65□□□□□ -0.22
CHMP3-209ENST00000494623 CYP2E1P05181 493 aaPredicted RBP13.64□□□□□ -0.23
CHMP3-209ENST00000494623 NCLP19338 710 aaKnown RBP13.64□□□□□ -0.23
CHMP3-209ENST00000494623 PI4K2BQ8TCG2 481 aa13.64□□□□□ -0.23
CHMP3-209ENST00000494623 C19orf44Q9H6X5 657 aa13.64□□□□□ -0.23
CHMP3-209ENST00000494623 NLRP2Q9NX02 1062 aa13.64□□□□□ -0.23
CHMP3-209ENST00000494623 SLC39A6Q13433 755 aa13.64□□□□□ -0.23
CHMP3-209ENST00000494623 HSP90AB4PQ58FF6 505 aa13.64□□□□□ -0.23
CHMP3-209ENST00000494623 FOXD4L5Q5VV16 416 aaPredicted RBP13.64□□□□□ -0.23
CHMP3-209ENST00000494623 FAM43AQ8N2R8 423 aa13.64□□□□□ -0.23
CHMP3-209ENST00000494623 FOXD4L4Q8WXT5 416 aaPredicted RBP13.64□□□□□ -0.23
CHMP3-209ENST00000494623 ZNF142P52746 1687 aaPredicted RBP13.64□□□□□ -0.23
CHMP3-209ENST00000494623 UPF3BQ9BZI7 483 aaKnown RBP13.63□□□□□ -0.23
CHMP3-209ENST00000494623 KDM3BQ7LBC6 1761 aa13.63□□□□□ -0.23
CHMP3-209ENST00000494623 RAPGEF4Q8WZA2 1011 aa13.63□□□□□ -0.23
CHMP3-209ENST00000494623 PA2G4Q9UQ80 394 aaKnown RBP13.63□□□□□ -0.23
CHMP3-209ENST00000494623 ZDHHC9Q9Y397 364 aa13.63□□□□□ -0.23
CHMP3-209ENST00000494623 ALDH1L1O75891 902 aa13.63□□□□□ -0.23
CHMP3-209ENST00000494623 MCM2P49736 904 aa13.63□□□□□ -0.23
CHMP3-209ENST00000494623 ANAPC15P60006 121 aa13.63□□□□□ -0.23
CHMP3-209ENST00000494623 HYPKQ9NX55 129 aa13.63□□□□□ -0.23
CHMP3-209ENST00000494623 CNTROBQ8N137 903 aa13.62□□□□□ -0.23
CHMP3-209ENST00000494623 LMO7Q8WWI1 1683 aa13.62□□□□□ -0.23
CHMP3-209ENST00000494623 SLIT3O75094 1523 aa13.62□□□□□ -0.23
CHMP3-209ENST00000494623 CLASRPQ8N2M8 674 aaKnown RBP13.62□□□□□ -0.23
CHMP3-209ENST00000494623 CHAMP1Q96JM3 812 aa13.62□□□□□ -0.23
CHMP3-209ENST00000494623 ERBB3P21860 1342 aa13.62□□□□□ -0.23
CHMP3-209ENST00000494623 NCAPD2Q15021 1401 aa13.61□□□□□ -0.23
CHMP3-209ENST00000494623 C1orf167Q5SNV9 1468 aa13.61□□□□□ -0.23
CHMP3-209ENST00000494623 PRPF40AO75400 957 aaKnown RBP13.61□□□□□ -0.23
CHMP3-209ENST00000494623 CSB-PGBD3P0DP91 1061 aa13.61□□□□□ -0.23
CHMP3-209ENST00000494623 ATF3P18847 181 aa13.61□□□□□ -0.23
CHMP3-209ENST00000494623 KLHL40Q2TBA0 621 aa13.61□□□□□ -0.23
CHMP3-209ENST00000494623 NFATC2IPQ8NCF5 419 aa13.61□□□□□ -0.23
CHMP3-209ENST00000494623 MYL6BP14649 208 aa13.61□□□□□ -0.23
CHMP3-209ENST00000494623 CWC27Q6UX04 472 aaKnown RBP13.61□□□□□ -0.23
CHMP3-209ENST00000494623 CABLES1Q8TDN4 633 aa13.61□□□□□ -0.23
CHMP3-209ENST00000494623 DDX21Q9NR30 783 aaKnown RBP eCLIP13.61□□□□□ -0.23
CHMP3-209ENST00000494623 LMBRD1Q9NUN5 540 aa13.61□□□□□ -0.23
CHMP3-209ENST00000494623 ISY1Q9ULR0 285 aaKnown RBP13.61□□□□□ -0.23
CHMP3-209ENST00000494623 HEG1Q9ULI3 1381 aa13.61□□□□□ -0.23
CHMP3-209ENST00000494623 ADAMTSL3P82987 1691 aa13.61□□□□□ -0.23
CHMP3-209ENST00000494623 N4BP2Q86UW6 1770 aaPredicted RBP13.6□□□□□ -0.23
CHMP3-209ENST00000494623 DDX58O95786 925 aaKnown RBP13.6□□□□□ -0.23
CHMP3-209ENST00000494623 HSPA4P34932 840 aa13.6□□□□□ -0.23
CHMP3-209ENST00000494623 ZNF790Q6PG37 636 aa13.6□□□□□ -0.23
CHMP3-209ENST00000494623 RIC3Q7Z5B4 369 aa13.6□□□□□ -0.23
CHMP3-209ENST00000494623 PHRF1Q9P1Y6 1649 aaKnown RBP13.6□□□□□ -0.23
CHMP3-209ENST00000494623 SGSM2O43147 1006 aa13.6□□□□□ -0.23
CHMP3-209ENST00000494623 MTX1Q13505 466 aa13.6□□□□□ -0.23
CHMP3-209ENST00000494623 TATP17735 454 aaPredicted RBP13.59□□□□□ -0.23
CHMP3-209ENST00000494623 PDIA6Q15084 440 aa13.59□□□□□ -0.23
CHMP3-209ENST00000494623 LINS1Q8NG48 757 aa13.59□□□□□ -0.23
CHMP3-209ENST00000494623 SUCLG2Q96I99 432 aa13.59□□□□□ -0.23
CHMP3-209ENST00000494623 RRAGDQ9NQL2 400 aaPredicted RBP13.59□□□□□ -0.23
CHMP3-209ENST00000494623 HDAC5Q9UQL6 1122 aa13.59□□□□□ -0.23
CHMP3-209ENST00000494623 TUBGCP6Q96RT7 1819 aa13.59□□□□□ -0.23
CHMP3-209ENST00000494623 GRM8O00222 908 aa13.59□□□□□ -0.23
CHMP3-209ENST00000494623 GLRX3O76003 335 aaKnown RBP13.59□□□□□ -0.23
CHMP3-209ENST00000494623 IFIT2P09913 472 aaKnown RBP13.59□□□□□ -0.23
CHMP3-209ENST00000494623 CUL4AQ13619 759 aa13.59□□□□□ -0.23
CHMP3-209ENST00000494623 KIAA1211Q6ZU35 1233 aa13.59□□□□□ -0.23
CHMP3-209ENST00000494623 SLC52A2Q9HAB3 445 aa13.59□□□□□ -0.23
CHMP3-209ENST00000494623 SPG7Q9UQ90 795 aa13.59□□□□□ -0.23
CHMP3-209ENST00000494623 CHRNA2Q15822 529 aa13.58□□□□□ -0.24
CHMP3-209ENST00000494623 CAVIN1Q6NZI2 390 aaKnown RBP13.58□□□□□ -0.24
CHMP3-209ENST00000494623 UBE2Q2Q8WVN8 375 aa13.58□□□□□ -0.24
CHMP3-209ENST00000494623 BICC1Q9H694 974 aaKnown RBP13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms