RNA–Protein interactions for RNA: ENST00000494047.5

RFC4-214, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 1,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-214ENST00000494047 SPATA31A5Q5VU36 1347 aa14.05□□□□□ -0.16
RFC4-214ENST00000494047 SPATA31A7Q8IWB4 1347 aa14.05□□□□□ -0.16
RFC4-214ENST00000494047 TUBGCP6Q96RT7 1819 aa14.05□□□□□ -0.16
RFC4-214ENST00000494047 XRCC6P12956 609 aaKnown RBP eCLIP14.05□□□□□ -0.16
RFC4-214ENST00000494047 EVA1CP58658 441 aa14.05□□□□□ -0.16
RFC4-214ENST00000494047 CCDC173Q0VFZ6 552 aa14.05□□□□□ -0.16
RFC4-214ENST00000494047 CCDC125Q86Z20 511 aa14.05□□□□□ -0.16
RFC4-214ENST00000494047 C1orf115Q9H7X2 142 aa14.05□□□□□ -0.16
RFC4-214ENST00000494047 MAP3K5Q99683 1374 aa14.04□□□□□ -0.16
RFC4-214ENST00000494047 ELL2O00472 640 aaPredicted RBP14.04□□□□□ -0.16
RFC4-214ENST00000494047 CHRNA2Q15822 529 aa14.04□□□□□ -0.16
RFC4-214ENST00000494047 PLEKHG2Q9H7P9 1386 aa14.03□□□□□ -0.16
RFC4-214ENST00000494047 LMO7Q8WWI1 1683 aa14.03□□□□□ -0.16
RFC4-214ENST00000494047 GNAT3A8MTJ3 354 aa14.03□□□□□ -0.16
RFC4-214ENST00000494047 RAB11FIP3O75154 756 aa14.03□□□□□ -0.16
RFC4-214ENST00000494047 MBD3O95983 291 aa14.03□□□□□ -0.16
RFC4-214ENST00000494047 SLC4A2P04920 1241 aa14.03□□□□□ -0.16
RFC4-214ENST00000494047 PDIA4P13667 645 aaKnown RBP14.03□□□□□ -0.16
RFC4-214ENST00000494047 AMPHP49418 695 aa14.03□□□□□ -0.16
RFC4-214ENST00000494047 NCAPD2Q15021 1401 aa14.03□□□□□ -0.16
RFC4-214ENST00000494047 HS1BP3Q53T59 392 aa14.03□□□□□ -0.16
RFC4-214ENST00000494047 HSP90AB4PQ58FF6 505 aa14.03□□□□□ -0.16
RFC4-214ENST00000494047 SEPT12Q8IYM1 358 aa14.03□□□□□ -0.16
RFC4-214ENST00000494047 INTS4Q96HW7 963 aaKnown RBP14.03□□□□□ -0.16
RFC4-214ENST00000494047 LRRCC1Q9C099 1032 aa14.03□□□□□ -0.16
RFC4-214ENST00000494047 MAP3K19Q56UN5 1328 aa14.03□□□□□ -0.16
RFC4-214ENST00000494047 THRAP3Q9Y2W1 955 aaKnown RBP14.02□□□□□ -0.17
RFC4-214ENST00000494047 SPATA31A1Q5TZJ5 1347 aa14.02□□□□□ -0.17
RFC4-214ENST00000494047 SDSP20132 328 aa14.01□□□□□ -0.17
RFC4-214ENST00000494047 ZNF445P59923 1031 aa14.01□□□□□ -0.17
RFC4-214ENST00000494047 ARHGEF25Q86VW2 580 aa14.01□□□□□ -0.17
RFC4-214ENST00000494047 AEBP1Q8IUX7 1158 aa14.01□□□□□ -0.17
RFC4-214ENST00000494047 SPRYD3Q8NCJ5 442 aa14.01□□□□□ -0.17
RFC4-214ENST00000494047 STRN4Q9NRL3 753 aa14.01□□□□□ -0.17
RFC4-214ENST00000494047 CAMTA1Q9Y6Y1 1673 aa14.01□□□□□ -0.17
RFC4-214ENST00000494047 ABCC6O95255 1503 aa14.01□□□□□ -0.17
RFC4-214ENST00000494047 CYP2E1P05181 493 aaPredicted RBP14□□□□□ -0.17
RFC4-214ENST00000494047 PDE1AP54750 535 aa14□□□□□ -0.17
RFC4-214ENST00000494047 FAM98CQ17RN3 349 aaKnown RBP14□□□□□ -0.17
RFC4-214ENST00000494047 HSP90AB2PQ58FF8 381 aa14□□□□□ -0.17
RFC4-214ENST00000494047 BARGINQ6ZT62 677 aa14□□□□□ -0.17
RFC4-214ENST00000494047 KRT27Q7Z3Y8 459 aa14□□□□□ -0.17
RFC4-214ENST00000494047 SYAP1Q96A49 352 aaPredicted RBP14□□□□□ -0.17
RFC4-214ENST00000494047 ZRANB1Q9UGI0 708 aa14□□□□□ -0.17
RFC4-214ENST00000494047 STAP2Q9UGK3 403 aa14□□□□□ -0.17
RFC4-214ENST00000494047 BRWD3Q6RI45 1802 aa13.99□□□□□ -0.17
RFC4-214ENST00000494047 A0A0G2JS52 829 aa13.99□□□□□ -0.17
RFC4-214ENST00000494047 BAG4O95429 457 aaKnown RBP13.99□□□□□ -0.17
RFC4-214ENST00000494047 MCM10Q7L590 875 aa13.99□□□□□ -0.17
RFC4-214ENST00000494047 RTN4Q9NQC3 1192 aaKnown RBP13.99□□□□□ -0.17
RFC4-214ENST00000494047 DDX49Q9Y6V7 483 aaKnown RBP13.99□□□□□ -0.17
RFC4-214ENST00000494047 COL5A2P05997 1499 aaPredicted RBP13.99□□□□□ -0.17
RFC4-214ENST00000494047 PHF14O94880 888 aa13.98□□□□□ -0.17
RFC4-214ENST00000494047 MX1P20591 662 aa13.98□□□□□ -0.17
RFC4-214ENST00000494047 FBLN1P23142 703 aa13.98□□□□□ -0.17
RFC4-214ENST00000494047 FLIIQ13045 1269 aa13.98□□□□□ -0.17
RFC4-214ENST00000494047 DCTN1Q14203 1278 aa13.98□□□□□ -0.17
RFC4-214ENST00000494047 MTHFSDQ2M296 383 aaKnown RBP13.98□□□□□ -0.17
RFC4-214ENST00000494047 MEIS3Q99687 375 aa13.98□□□□□ -0.17
RFC4-214ENST00000494047 COL18A1P39060 1754 aa13.98□□□□□ -0.17
RFC4-214ENST00000494047 NFAT5O94916 1531 aa13.98□□□□□ -0.17
RFC4-214ENST00000494047 KDM3BQ7LBC6 1761 aa13.97□□□□□ -0.17
RFC4-214ENST00000494047 ATP8B2P98198 1209 aa13.97□□□□□ -0.17
RFC4-214ENST00000494047 TAF7Q15545 349 aaPredicted RBP13.97□□□□□ -0.17
RFC4-214ENST00000494047 AK9Q5TCS8 1911 aa13.97□□□□□ -0.17
RFC4-214ENST00000494047 THSD7AQ9UPZ6 1657 aa13.97□□□□□ -0.17
RFC4-214ENST00000494047 ZBTB7CA1YPR0 619 aa13.96□□□□□ -0.17
RFC4-214ENST00000494047 FKBP5Q13451 457 aaPredicted RBP13.96□□□□□ -0.17
RFC4-214ENST00000494047 LARP1Q6PKG0 1096 aaKnown RBP13.96□□□□□ -0.17
RFC4-214ENST00000494047 PPP1R9BQ96SB3 815 aa13.96□□□□□ -0.17
RFC4-214ENST00000494047 GZF1Q9H116 711 aaPredicted RBP13.96□□□□□ -0.17
RFC4-214ENST00000494047 SALL3Q9BXA9 1300 aa13.96□□□□□ -0.17
RFC4-214ENST00000494047 LTN1O94822 1766 aa13.96□□□□□ -0.17
RFC4-214ENST00000494047 UBTFL1P0CB47 393 aaPredicted RBP13.96□□□□□ -0.18
RFC4-214ENST00000494047 NASPP49321 788 aaPredicted RBP13.96□□□□□ -0.18
RFC4-214ENST00000494047 EYA1Q99502 592 aa13.96□□□□□ -0.18
RFC4-214ENST00000494047 CDCA7Q9BWT1 371 aaPredicted RBP13.96□□□□□ -0.18
RFC4-214ENST00000494047 WDR17Q8IZU2 1322 aa13.96□□□□□ -0.18
RFC4-214ENST00000494047 CEMIPQ8WUJ3 1361 aa13.96□□□□□ -0.18
RFC4-214ENST00000494047 ESPNB1AK53 854 aa13.95□□□□□ -0.18
RFC4-214ENST00000494047 HOXC9P31274 260 aa13.95□□□□□ -0.18
RFC4-214ENST00000494047 ESYT1Q9BSJ8 1104 aa13.95□□□□□ -0.18
RFC4-214ENST00000494047 SOX12O15370 315 aa13.94□□□□□ -0.18
RFC4-214ENST00000494047 MCM5P33992 734 aa13.94□□□□□ -0.18
RFC4-214ENST00000494047 SF3B2Q13435 895 aaKnown RBP13.94□□□□□ -0.18
RFC4-214ENST00000494047 CUL4AQ13619 759 aa13.94□□□□□ -0.18
RFC4-214ENST00000494047 CSPP1Q1MSJ5 1256 aa13.94□□□□□ -0.18
RFC4-214ENST00000494047 TOM1L2Q6ZVM7 507 aa13.94□□□□□ -0.18
RFC4-214ENST00000494047 GPATCH3Q96I76 525 aa13.94□□□□□ -0.18
RFC4-214ENST00000494047 AXIN2Q9Y2T1 843 aa13.94□□□□□ -0.18
RFC4-214ENST00000494047 TTC41PQ6P2S7 1318 aa13.93□□□□□ -0.18
RFC4-214ENST00000494047 NCLP19338 710 aaKnown RBP13.93□□□□□ -0.18
RFC4-214ENST00000494047 SSFA2P28290 1259 aa13.93□□□□□ -0.18
RFC4-214ENST00000494047 TERF1P54274 439 aa13.93□□□□□ -0.18
RFC4-214ENST00000494047 AMOTQ4VCS5 1084 aa13.93□□□□□ -0.18
RFC4-214ENST00000494047 SLC4A10Q6U841 1118 aa13.93□□□□□ -0.18
RFC4-214ENST00000494047 ERC1Q8IUD2 1116 aa13.93□□□□□ -0.18
RFC4-214ENST00000494047 SSH3Q8TE77 659 aa13.93□□□□□ -0.18
RFC4-214ENST00000494047 RUFY2Q8WXA3 655 aa13.93□□□□□ -0.18
RFC4-214ENST00000494047 KIF1BPQ96EK5 621 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms