RNA–Protein interactions for RNA: ENST00000493853.1

RBM39-238, Transcript of RNA binding motif protein 39, human

TSL 4

Gene RBM39, Length 567 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-238	ENST00000493853	THSD7A	Q9UPZ6	1657 aa		10.57	□□□□□ -0.72
RBM39-238	ENST00000493853	ST20-MTHFS	A0A0A6YYL1	179 aa		10.56	□□□□□ -0.72
RBM39-238	ENST00000493853	NBPF26	B4DH59	902 aa		10.56	□□□□□ -0.72
RBM39-238	ENST00000493853	BCAM	P50895	628 aa		10.56	□□□□□ -0.72
RBM39-238	ENST00000493853	SMYD5	Q6GMV2	418 aa		10.56	□□□□□ -0.72
RBM39-238	ENST00000493853	PADI6	Q6TGC4	694 aa		10.56	□□□□□ -0.72
RBM39-238	ENST00000493853	TATDN2	Q93075	761 aa		10.56	□□□□□ -0.72
RBM39-238	ENST00000493853	RBM27	Q9P2N5	1060 aa	Known RBP	10.56	□□□□□ -0.72
RBM39-238	ENST00000493853	DISP2	A7MBM2	1401 aa		10.56	□□□□□ -0.72
RBM39-238	ENST00000493853	SLIT3	O75094	1523 aa		10.54	□□□□□ -0.72
RBM39-238	ENST00000493853	OVOS2	A0A0G2JMS6	1433 aa		10.54	□□□□□ -0.72
RBM39-238	ENST00000493853	OVOS2	A0A0J9YW53	1432 aa		10.54	□□□□□ -0.72
RBM39-238	ENST00000493853	TESPA1	A2RU30	521 aa	Predicted RBP	10.54	□□□□□ -0.72
RBM39-238	ENST00000493853	SOWAHB	A6NEL2	793 aa		10.54	□□□□□ -0.72
RBM39-238	ENST00000493853	OVOS2	Q6IE36	1432 aa		10.54	□□□□□ -0.72
RBM39-238	ENST00000493853	NUDT18	Q6ZVK8	323 aa		10.54	□□□□□ -0.72
RBM39-238	ENST00000493853	COG3	Q96JB2	828 aa		10.54	□□□□□ -0.72
RBM39-238	ENST00000493853	PLA2G2E	Q9NZK7	142 aa		10.54	□□□□□ -0.72
RBM39-238	ENST00000493853	CCDC7	Q96M83	1385 aa		10.53	□□□□□ -0.72
RBM39-238	ENST00000493853	PLSCR1	O15162	318 aa		10.53	□□□□□ -0.72
RBM39-238	ENST00000493853	TMF1	P82094	1093 aa		10.53	□□□□□ -0.72
RBM39-238	ENST00000493853	MARCH10	Q8NA82	808 aa	Predicted RBP	10.53	□□□□□ -0.72
RBM39-238	ENST00000493853	LRCH3	Q96II8	777 aa		10.53	□□□□□ -0.72
RBM39-238	ENST00000493853	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	10.53	□□□□□ -0.72
RBM39-238	ENST00000493853	LMO7	Q8WWI1	1683 aa		10.53	□□□□□ -0.72
RBM39-238	ENST00000493853	USP31	Q70CQ4	1352 aa		10.52	□□□□□ -0.72
RBM39-238	ENST00000493853	EDC4	Q6P2E9	1401 aa	Known RBP	10.52	□□□□□ -0.73
RBM39-238	ENST00000493853	PTGDR	Q13258	359 aa		10.52	□□□□□ -0.73
RBM39-238	ENST00000493853	ANKRD24	Q8TF21	1146 aa		10.52	□□□□□ -0.73
RBM39-238	ENST00000493853	RGPD1	P0DJD0	1748 aa		10.52	□□□□□ -0.73
RBM39-238	ENST00000493853	C3orf80	F5H4A9	247 aa		10.51	□□□□□ -0.73
RBM39-238	ENST00000493853	IL2RB	P14784	551 aa		10.51	□□□□□ -0.73
RBM39-238	ENST00000493853	AMPH	P49418	695 aa		10.51	□□□□□ -0.73
RBM39-238	ENST00000493853	CDCA8	Q53HL2	280 aa		10.51	□□□□□ -0.73
RBM39-238	ENST00000493853	LTV1	Q96GA3	475 aa	Predicted RBP	10.51	□□□□□ -0.73
RBM39-238	ENST00000493853	TESK2	Q96S53	571 aa		10.51	□□□□□ -0.73
RBM39-238	ENST00000493853	PCGF6	Q9BYE7	350 aa		10.51	□□□□□ -0.73
RBM39-238	ENST00000493853	PPP1R1B	Q9UD71	204 aa	Predicted RBP	10.51	□□□□□ -0.73
RBM39-238	ENST00000493853		A0A1W2PP64	1363 aa		10.51	□□□□□ -0.73
RBM39-238	ENST00000493853	NINL	Q9Y2I6	1382 aa		10.51	□□□□□ -0.73
RBM39-238	ENST00000493853	RBM26	Q5T8P6	1007 aa	Known RBP	10.5	□□□□□ -0.73
RBM39-238	ENST00000493853	TTC13	Q8NBP0	860 aa		10.5	□□□□□ -0.73
RBM39-238	ENST00000493853	IP6K1	Q92551	441 aa		10.5	□□□□□ -0.73
RBM39-238	ENST00000493853	SPON1	Q9HCB6	807 aa		10.5	□□□□□ -0.73
RBM39-238	ENST00000493853	PIK3C2A	O00443	1686 aa		10.5	□□□□□ -0.73
RBM39-238	ENST00000493853	SAMD7	Q7Z3H4	446 aa		10.49	□□□□□ -0.73
RBM39-238	ENST00000493853	ACSBG1	Q96GR2	724 aa		10.49	□□□□□ -0.73
RBM39-238	ENST00000493853	KCNQ2	O43526	872 aa		10.48	□□□□□ -0.73
RBM39-238	ENST00000493853	FCHSD2	O94868	740 aa		10.48	□□□□□ -0.73
RBM39-238	ENST00000493853	PTF1A	Q7RTS3	328 aa		10.48	□□□□□ -0.73
RBM39-238	ENST00000493853	DDX54	Q8TDD1	881 aa	Known RBP	10.48	□□□□□ -0.73
RBM39-238	ENST00000493853	WBP1L	Q9NX94	342 aa		10.48	□□□□□ -0.73
RBM39-238	ENST00000493853	STK32B	Q9NY57	414 aa		10.48	□□□□□ -0.73
RBM39-238	ENST00000493853	TSR3	Q9UJK0	312 aa	Known RBP	10.48	□□□□□ -0.73
RBM39-238	ENST00000493853	TIMELESS	Q9UNS1	1208 aa		10.48	□□□□□ -0.73
RBM39-238	ENST00000493853	HPS5	Q9UPZ3	1129 aa		10.48	□□□□□ -0.73
RBM39-238	ENST00000493853	CD163L1	Q9NR16	1453 aa		10.48	□□□□□ -0.73
RBM39-238	ENST00000493853	TXNRD1	Q16881	649 aa		10.47	□□□□□ -0.73
RBM39-238	ENST00000493853	USP47	Q96K76	1375 aa		10.47	□□□□□ -0.73
RBM39-238	ENST00000493853	NFAT5	O94916	1531 aa		10.47	□□□□□ -0.73
RBM39-238	ENST00000493853	FBLN1	P23142	703 aa		10.46	□□□□□ -0.73
RBM39-238	ENST00000493853	GGNBP2	Q9H3C7	697 aa		10.46	□□□□□ -0.73
RBM39-238	ENST00000493853	BCL9	O00512	1426 aa		10.46	□□□□□ -0.74
RBM39-238	ENST00000493853	PARP4	Q9UKK3	1724 aa	Known RBP	10.45	□□□□□ -0.74
RBM39-238	ENST00000493853	ANKRD36B	Q8N2N9	1353 aa		10.45	□□□□□ -0.74
RBM39-238	ENST00000493853	MAP3K19	Q56UN5	1328 aa		10.45	□□□□□ -0.74
RBM39-238	ENST00000493853	FYB1	O15117	783 aa		10.45	□□□□□ -0.74
RBM39-238	ENST00000493853	HOXC9	P31274	260 aa		10.45	□□□□□ -0.74
RBM39-238	ENST00000493853	PPP4C	P60510	307 aa		10.45	□□□□□ -0.74
RBM39-238	ENST00000493853	NYAP1	Q6ZVC0	841 aa		10.45	□□□□□ -0.74
RBM39-238	ENST00000493853	SYTL4	Q96C24	671 aa	Predicted RBP	10.45	□□□□□ -0.74
RBM39-238	ENST00000493853	AKAP12	Q02952	1782 aa		10.44	□□□□□ -0.74
RBM39-238	ENST00000493853	TNS1	Q9HBL0	1735 aa	Known RBP	10.44	□□□□□ -0.74
RBM39-238	ENST00000493853	ABCC6	O95255	1503 aa		10.44	□□□□□ -0.74
RBM39-238	ENST00000493853	TNS2	Q63HR2	1409 aa		10.44	□□□□□ -0.74
RBM39-238	ENST00000493853	RNF40	O75150	1001 aa		10.44	□□□□□ -0.74
RBM39-238	ENST00000493853	RRS1	Q15050	365 aa	Known RBP	10.44	□□□□□ -0.74
RBM39-238	ENST00000493853	SLC15A2	Q16348	729 aa		10.44	□□□□□ -0.74
RBM39-238	ENST00000493853	POLR3GL	Q9BT43	218 aa		10.44	□□□□□ -0.74
RBM39-238	ENST00000493853	COL18A1	P39060	1754 aa		10.44	□□□□□ -0.74
RBM39-238	ENST00000493853	LRP5	O75197	1615 aa		10.44	□□□□□ -0.74
RBM39-238	ENST00000493853	CLSPN	Q9HAW4	1339 aa		10.43	□□□□□ -0.74
RBM39-238	ENST00000493853	ZBTB7A	O95365	584 aa		10.43	□□□□□ -0.74
RBM39-238	ENST00000493853	ZCRB1	Q8TBF4	217 aa	Known RBP	10.43	□□□□□ -0.74
RBM39-238	ENST00000493853	RAPGEF4	Q8WZA2	1011 aa		10.43	□□□□□ -0.74
RBM39-238	ENST00000493853	TULP1	O00294	542 aa	Predicted RBP	10.42	□□□□□ -0.74
RBM39-238	ENST00000493853	RBM46	Q8TBY0	533 aa	Known RBP	10.42	□□□□□ -0.74
RBM39-238	ENST00000493853	EYA1	Q99502	592 aa		10.42	□□□□□ -0.74
RBM39-238	ENST00000493853	LRRC37A3	O60309	1634 aa		10.42	□□□□□ -0.74
RBM39-238	ENST00000493853	MON2	Q7Z3U7	1717 aa		10.41	□□□□□ -0.74
RBM39-238	ENST00000493853	PPM1G	O15355	546 aa	Predicted RBP	10.41	□□□□□ -0.74
RBM39-238	ENST00000493853	HIC1	Q14526	733 aa		10.41	□□□□□ -0.74
RBM39-238	ENST00000493853	FAM161A	Q3B820	660 aa		10.41	□□□□□ -0.74
RBM39-238	ENST00000493853	SWT1	Q5T5J6	900 aa	Known RBP	10.41	□□□□□ -0.74
RBM39-238	ENST00000493853	CCER1	Q8TC90	406 aa	Predicted RBP	10.41	□□□□□ -0.74
RBM39-238	ENST00000493853	SMG6	Q86US8	1419 aa	Known RBP	10.41	□□□□□ -0.74
RBM39-238	ENST00000493853	TAT	P17735	454 aa	Predicted RBP	10.4	□□□□□ -0.74
RBM39-238	ENST00000493853	SLC4A3	P48751	1232 aa		10.4	□□□□□ -0.74
RBM39-238	ENST00000493853	NBPF6	Q5VWK0	638 aa		10.4	□□□□□ -0.74
RBM39-238	ENST00000493853	NBPF4	Q96M43	638 aa		10.4	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 492.6 ms