RNA–Protein interactions for RNA: ENST00000493732.5

NPHP3-209, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 1,933 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-209ENST00000493732 TRPM3Q9HCF6 1732 aaPredicted RBP11.78□□□□□ -0.52
NPHP3-209ENST00000493732 FSD2A1L4K1 749 aa11.78□□□□□ -0.52
NPHP3-209ENST00000493732 PI4KAP2A4QPH2 592 aa11.78□□□□□ -0.52
NPHP3-209ENST00000493732 TRIM6-TRIM34B2RNG4 842 aa11.78□□□□□ -0.52
NPHP3-209ENST00000493732 SURF6O75683 361 aaKnown RBP11.78□□□□□ -0.52
NPHP3-209ENST00000493732 MRE11P49959 708 aa11.78□□□□□ -0.52
NPHP3-209ENST00000493732 LMOD2Q6P5Q4 547 aa11.78□□□□□ -0.52
NPHP3-209ENST00000493732 MPRIPQ6WCQ1 1025 aa11.78□□□□□ -0.52
NPHP3-209ENST00000493732 ERC1Q8IUD2 1116 aa11.78□□□□□ -0.52
NPHP3-209ENST00000493732 PI4KAP1Q8N8J0 262 aa11.78□□□□□ -0.52
NPHP3-209ENST00000493732 LRRC59Q96AG4 307 aaKnown RBP11.78□□□□□ -0.52
NPHP3-209ENST00000493732 IL17RAQ96F46 866 aa11.78□□□□□ -0.52
NPHP3-209ENST00000493732 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.78□□□□□ -0.522e-8■■■■□ 25.6
NPHP3-209ENST00000493732 SRGAP3O43295 1099 aa11.77□□□□□ -0.53
NPHP3-209ENST00000493732 GIGYF1O75420 1035 aaPredicted RBP11.77□□□□□ -0.53
NPHP3-209ENST00000493732 CHMLP26374 656 aa11.77□□□□□ -0.53
NPHP3-209ENST00000493732 KSR2Q6VAB6 950 aa11.77□□□□□ -0.53
NPHP3-209ENST00000493732 RHPN1Q8TCX5 695 aa11.77□□□□□ -0.53
NPHP3-209ENST00000493732 RBM33Q96EV2 1170 aaKnown RBP11.77□□□□□ -0.53
NPHP3-209ENST00000493732 ABCC6O95255 1503 aa11.77□□□□□ -0.53
NPHP3-209ENST00000493732 ATF3P18847 181 aa11.76□□□□□ -0.53
NPHP3-209ENST00000493732 RAPGEF4Q8WZA2 1011 aa11.76□□□□□ -0.53
NPHP3-209ENST00000493732 RILPL2Q969X0 211 aa11.76□□□□□ -0.53
NPHP3-209ENST00000493732 TTC41PQ6P2S7 1318 aa11.76□□□□□ -0.53
NPHP3-209ENST00000493732 GPATCH3Q96I76 525 aa11.76□□□□□ -0.53
NPHP3-209ENST00000493732 BRPF3Q9ULD4 1205 aa11.76□□□□□ -0.53
NPHP3-209ENST00000493732 SPG7Q9UQ90 795 aa11.76□□□□□ -0.53
NPHP3-209ENST00000493732 ERBB3P21860 1342 aa11.75□□□□□ -0.53
NPHP3-209ENST00000493732 CNTROBQ8N137 903 aa11.75□□□□□ -0.53
NPHP3-209ENST00000493732 C9orf78Q9NZ63 289 aaPredicted RBP11.75□□□□□ -0.53
NPHP3-209ENST00000493732 ADAMTS7Q9UKP4 1686 aa11.75□□□□□ -0.53
NPHP3-209ENST00000493732 RGPD2P0DJD1 1756 aa11.75□□□□□ -0.53
NPHP3-209ENST00000493732 USP42Q9H9J4 1324 aaKnown RBP11.75□□□□□ -0.53
NPHP3-209ENST00000493732 TUBGCP6Q96RT7 1819 aa11.74□□□□□ -0.53
NPHP3-209ENST00000493732 LINS1Q8NG48 757 aa11.74□□□□□ -0.53
NPHP3-209ENST00000493732 DDX21Q9NR30 783 aaKnown RBP eCLIP11.74□□□□□ -0.53
NPHP3-209ENST00000493732 ADCY9O60503 1353 aa11.74□□□□□ -0.53
NPHP3-209ENST00000493732 GLRX3O76003 335 aaKnown RBP11.74□□□□□ -0.53
NPHP3-209ENST00000493732 NBPF7P0C2Y1 421 aaPredicted RBP11.74□□□□□ -0.53
NPHP3-209ENST00000493732 TATP17735 454 aaPredicted RBP11.74□□□□□ -0.53
NPHP3-209ENST00000493732 CLASRPQ8N2M8 674 aaKnown RBP11.74□□□□□ -0.53
NPHP3-209ENST00000493732 INTS4Q96HW7 963 aaKnown RBP11.74□□□□□ -0.53
NPHP3-209ENST00000493732 ANO2Q9NQ90 1003 aa11.74□□□□□ -0.53
NPHP3-209ENST00000493732 BAG4O95429 457 aaKnown RBP11.73□□□□□ -0.53
NPHP3-209ENST00000493732 CYP2E1P05181 493 aaPredicted RBP11.73□□□□□ -0.53
NPHP3-209ENST00000493732 NEK4P51957 841 aa11.73□□□□□ -0.53
NPHP3-209ENST00000493732 OS9Q13438 667 aaPredicted RBP11.73□□□□□ -0.53
NPHP3-209ENST00000493732 FAM43AQ8N2R8 423 aa11.73□□□□□ -0.53
NPHP3-209ENST00000493732 RUFY2Q8WXA3 655 aa11.73□□□□□ -0.53
NPHP3-209ENST00000493732 FOXD4L1Q9NU39 408 aa11.73□□□□□ -0.53
NPHP3-209ENST00000493732 MAP3K2Q9Y2U5 619 aa11.73□□□□□ -0.53
NPHP3-209ENST00000493732 NPHP3Q7Z494 1330 aa11.73□□□□□ -0.53
NPHP3-209ENST00000493732 ALS2Q96Q42 1657 aa11.73□□□□□ -0.53
NPHP3-209ENST00000493732 KCNQ3O43525 872 aa11.72□□□□□ -0.53
NPHP3-209ENST00000493732 SSFA2P28290 1259 aa11.72□□□□□ -0.53
NPHP3-209ENST00000493732 XPCQ01831 940 aaPredicted RBP11.72□□□□□ -0.53
NPHP3-209ENST00000493732 KLHL40Q2TBA0 621 aa11.72□□□□□ -0.53
NPHP3-209ENST00000493732 CADPS2Q86UW7 1296 aa11.72□□□□□ -0.53
NPHP3-209ENST00000493732 GZF1Q9H116 711 aaPredicted RBP11.72□□□□□ -0.53
NPHP3-209ENST00000493732 UTYO14607 1347 aa11.72□□□□□ -0.53
NPHP3-209ENST00000493732 PXDNQ92626 1479 aa11.72□□□□□ -0.53
NPHP3-209ENST00000493732 SIPA1L3O60292 1781 aaPredicted RBP11.72□□□□□ -0.53
NPHP3-209ENST00000493732 NEXNQ0ZGT2 675 aa11.72□□□□□ -0.53
NPHP3-209ENST00000493732 LARP1Q6PKG0 1096 aaKnown RBP11.72□□□□□ -0.53
NPHP3-209ENST00000493732 KIAA1211Q6ZU35 1233 aa11.72□□□□□ -0.53
NPHP3-209ENST00000493732 PI4K2BQ8TCG2 481 aa11.72□□□□□ -0.53
NPHP3-209ENST00000493732 IL1RAPL2Q9NP60 686 aa11.72□□□□□ -0.53
NPHP3-209ENST00000493732 AXIN2Q9Y2T1 843 aa11.72□□□□□ -0.53
NPHP3-209ENST00000493732 IFNL2Q8IZJ0 200 aa11.71□□□□□ -0.53
NPHP3-209ENST00000493732 SLC52A2Q9HAB3 445 aa11.71□□□□□ -0.53
NPHP3-209ENST00000493732 GRM8O00222 908 aa11.7□□□□□ -0.54
NPHP3-209ENST00000493732 HIP1O00291 1037 aa11.7□□□□□ -0.54
NPHP3-209ENST00000493732 XRCC6P12956 609 aaKnown RBP eCLIP11.7□□□□□ -0.54
NPHP3-209ENST00000493732 HSPA4P34932 840 aa11.7□□□□□ -0.54
NPHP3-209ENST00000493732 CUL4AQ13619 759 aa11.7□□□□□ -0.54
NPHP3-209ENST00000493732 ZNF790Q6PG37 636 aa11.7□□□□□ -0.54
NPHP3-209ENST00000493732 NUTM1Q86Y26 1132 aa11.7□□□□□ -0.54
NPHP3-209ENST00000493732 NLRP2Q9NX02 1062 aa11.7□□□□□ -0.54
NPHP3-209ENST00000493732 SGSM2O43147 1006 aa11.7□□□□□ -0.54
NPHP3-209ENST00000493732 TSHZ3Q63HK5 1081 aa11.7□□□□□ -0.54
NPHP3-209ENST00000493732 TMX3Q96JJ7 454 aa11.7□□□□□ -0.54
NPHP3-209ENST00000493732 DCAF5Q96JK2 942 aa11.7□□□□□ -0.54
NPHP3-209ENST00000493732 GRPEL1Q9HAV7 217 aa11.7□□□□□ -0.54
NPHP3-209ENST00000493732 ECHDC1Q9NTX5 307 aa11.7□□□□□ -0.54
NPHP3-209ENST00000493732 DDX49Q9Y6V7 483 aaKnown RBP11.7□□□□□ -0.54
NPHP3-209ENST00000493732 IFIT2P09913 472 aaKnown RBP11.69□□□□□ -0.54
NPHP3-209ENST00000493732 PHKG2P15735 406 aa11.69□□□□□ -0.54
NPHP3-209ENST00000493732 ZC3H6P61129 1189 aaKnown RBP11.69□□□□□ -0.54
NPHP3-209ENST00000493732 RAD50Q92878 1312 aa11.69□□□□□ -0.54
NPHP3-209ENST00000493732 TMEM94Q12767 1356 aa11.69□□□□□ -0.54
NPHP3-209ENST00000493732 G3BP1Q13283 466 aaKnown RBP eCLIP11.68□□□□□ -0.54
NPHP3-209ENST00000493732 RIC3Q7Z5B4 369 aa11.68□□□□□ -0.54
NPHP3-209ENST00000493732 TTC5Q8N0Z6 440 aa11.68□□□□□ -0.54
NPHP3-209ENST00000493732 TNS3Q68CZ2 1445 aa11.68□□□□□ -0.54
NPHP3-209ENST00000493732 ANXA1P04083 346 aa11.68□□□□□ -0.54
NPHP3-209ENST00000493732 SNRPA1P09661 255 aaKnown RBP11.68□□□□□ -0.54
NPHP3-209ENST00000493732 CSB-PGBD3P0DP91 1061 aa11.68□□□□□ -0.54
NPHP3-209ENST00000493732 EVI5LQ96CN4 794 aa11.68□□□□□ -0.54
NPHP3-209ENST00000493732 DIAPH3Q9NSV4 1193 aa11.68□□□□□ -0.54
NPHP3-209ENST00000493732 CPDO75976 1380 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms