RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, human

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF3A-209	ENST00000492270	COL15A1	P39059	1388 aa		32.67	■■■□□ 2.82
UPF3A-209	ENST00000492270	THUMPD2	Q9BTF0	503 aa	Known RBP	32.66	■■■□□ 2.82
UPF3A-209	ENST00000492270	KIAA1551	Q9HCM1	1747 aa		32.65	■■■□□ 2.82
UPF3A-209	ENST00000492270	CHD4	Q14839	1912 aa		32.65	■■■□□ 2.82
UPF3A-209	ENST00000492270	CANX	P27824	592 aa	Known RBP	32.65	■■■□□ 2.82
UPF3A-209	ENST00000492270	CD2AP	Q9Y5K6	639 aa		32.65	■■■□□ 2.82
UPF3A-209	ENST00000492270	UTRN	P46939	3433 aa		32.65	■■■□□ 2.82
UPF3A-209	ENST00000492270	LAMB4	A4D0S4	1761 aa		32.64	■■■□□ 2.82
UPF3A-209	ENST00000492270	CCDC146	Q8IYE0	955 aa		32.64	■■■□□ 2.82
UPF3A-209	ENST00000492270	STARD3NL	O95772	234 aa		32.63	■■■□□ 2.81
UPF3A-209	ENST00000492270	TAF7	Q15545	349 aa	Predicted RBP	32.63	■■■□□ 2.81
UPF3A-209	ENST00000492270	MIS18A	Q9NYP9	233 aa		32.63	■■■□□ 2.81
UPF3A-209	ENST00000492270	GOLGB1	Q14789	3259 aa	Known RBP	32.63	■■■□□ 2.81
UPF3A-209	ENST00000492270	N4BP2	Q86UW6	1770 aa	Predicted RBP	32.63	■■■□□ 2.81
UPF3A-209	ENST00000492270	PRAMEF22	A3QJZ6	481 aa		32.62	■■■□□ 2.81
UPF3A-209	ENST00000492270	FKBP8	Q14318	412 aa		32.62	■■■□□ 2.81
UPF3A-209	ENST00000492270	WDR43	Q15061	677 aa	Known RBP eCLIP	32.62	■■■□□ 2.81
UPF3A-209	ENST00000492270	PELP1	Q8IZL8	1130 aa	Known RBP	32.62	■■■□□ 2.81
UPF3A-209	ENST00000492270	TEX13A	Q9BXU3	409 aa	Predicted RBP	32.61	■■■□□ 2.81
UPF3A-209	ENST00000492270	SCN7A	Q01118	1682 aa		32.61	■■■□□ 2.81
UPF3A-209	ENST00000492270	GPR162	Q16538	588 aa		32.6	■■■□□ 2.81
UPF3A-209	ENST00000492270	USPL1	Q5W0Q7	1092 aa		32.6	■■■□□ 2.81
UPF3A-209	ENST00000492270	AFDN	P55196	1824 aa	Known RBP	32.6	■■■□□ 2.81
UPF3A-209	ENST00000492270	ZPR1	O75312	459 aa		32.58	■■■□□ 2.81
UPF3A-209	ENST00000492270	RIPK4	P57078	832 aa		32.58	■■■□□ 2.81
UPF3A-209	ENST00000492270	ADAMTS8	Q9UP79	889 aa		32.58	■■■□□ 2.81
UPF3A-209	ENST00000492270	USP16	Q9Y5T5	823 aa		32.58	■■■□□ 2.81
UPF3A-209	ENST00000492270	A1BG	P04217	495 aa		32.57	■■■□□ 2.8
UPF3A-209	ENST00000492270	TMPO	P42166	694 aa	Known RBP	32.57	■■■□□ 2.8
UPF3A-209	ENST00000492270	EIF5	P55010	431 aa	Known RBP	32.57	■■■□□ 2.8
UPF3A-209	ENST00000492270	NARF	Q9UHQ1	456 aa		32.57	■■■□□ 2.8
UPF3A-209	ENST00000492270	RRP7A	Q9Y3A4	280 aa	Known RBP	32.57	■■■□□ 2.8
UPF3A-209	ENST00000492270	C10orf71	Q711Q0	1435 aa		32.57	■■■□□ 2.8
UPF3A-209	ENST00000492270	BCOR	Q6W2J9	1755 aa		32.56	■■■□□ 2.8
UPF3A-209	ENST00000492270	DDR1	Q08345	913 aa		32.55	■■■□□ 2.8
UPF3A-209	ENST00000492270	ZNF330	Q9Y3S2	320 aa	Predicted RBP	32.55	■■■□□ 2.8
UPF3A-209	ENST00000492270	PARP3	Q9Y6F1	533 aa		32.55	■■■□□ 2.8
UPF3A-209	ENST00000492270	SNRPA1	P09661	255 aa	Known RBP	32.54	■■■□□ 2.8
UPF3A-209	ENST00000492270	YBX3	P16989	372 aa	Known RBP eCLIP	32.54	■■■□□ 2.8
UPF3A-209	ENST00000492270	RUNDC1	Q96C34	613 aa		32.54	■■■□□ 2.8
UPF3A-209	ENST00000492270	BCL2L12	Q9HB09	334 aa		32.54	■■■□□ 2.8
UPF3A-209	ENST00000492270	PIP4K2A	P48426	406 aa	Predicted RBP	32.53	■■■□□ 2.8
UPF3A-209	ENST00000492270	NRXN2	Q9P2S2	1712 aa		32.52	■■■□□ 2.8
UPF3A-209	ENST00000492270	YY1	P25490	414 aa		32.52	■■■□□ 2.8
UPF3A-209	ENST00000492270	NEUROD2	Q15784	382 aa		32.52	■■■□□ 2.8
UPF3A-209	ENST00000492270	WWC3	Q9ULE0	1092 aa		32.52	■■■□□ 2.8
UPF3A-209	ENST00000492270	PXDNL	A1KZ92	1463 aa		32.52	■■■□□ 2.8
UPF3A-209	ENST00000492270	BRCA1	P38398	1863 aa	Known RBP	32.52	■■■□□ 2.8
UPF3A-209	ENST00000492270	IL6ST	P40189	918 aa	Predicted RBP	32.51	■■■□□ 2.79
UPF3A-209	ENST00000492270	PNISR	Q8TF01	805 aa	Known RBP	32.51	■■■□□ 2.79
UPF3A-209	ENST00000492270	TM4SF1	P30408	202 aa		32.5	■■■□□ 2.79
UPF3A-209	ENST00000492270	CCDC184	Q52MB2	194 aa		32.5	■■■□□ 2.79
UPF3A-209	ENST00000492270		A0A087WZG4	1122 aa		32.48	■■■□□ 2.79
UPF3A-209	ENST00000492270	POLRMT	O00411	1230 aa	Known RBP	32.48	■■■□□ 2.79
UPF3A-209	ENST00000492270	TBC1D2B	Q9UPU7	963 aa		32.48	■■■□□ 2.79
UPF3A-209	ENST00000492270	EIF4A1	P60842	406 aa	Known RBP	32.47	■■■□□ 2.79
UPF3A-209	ENST00000492270	NFIX	Q14938	502 aa		32.47	■■■□□ 2.79
UPF3A-209	ENST00000492270	LMOD3	Q0VAK6	560 aa		32.46	■■■□□ 2.79
UPF3A-209	ENST00000492270	TRIM35	Q9UPQ4	493 aa		32.45	■■■□□ 2.79
UPF3A-209	ENST00000492270	NBPF26	B4DH59	902 aa		32.44	■■■□□ 2.78
UPF3A-209	ENST00000492270	NBPF10	Q6P3W6	841 aa	Known RBP	32.44	■■■□□ 2.78
UPF3A-209	ENST00000492270	NBPF15	Q8N660	670 aa		32.44	■■■□□ 2.78
UPF3A-209	ENST00000492270	TSPYL4	Q9UJ04	414 aa		32.43	■■■□□ 2.78
UPF3A-209	ENST00000492270		A0A0G2JLW4	131 aa		32.42	■■■□□ 2.78
UPF3A-209	ENST00000492270	GIGYF1	O75420	1035 aa	Predicted RBP	32.42	■■■□□ 2.78
UPF3A-209	ENST00000492270	TGFB2	P61812	414 aa		32.41	■■■□□ 2.78
UPF3A-209	ENST00000492270	BICDL1	Q6ZP65	573 aa		32.41	■■■□□ 2.78
UPF3A-209	ENST00000492270	CAMTA2	O94983	1202 aa		32.4	■■■□□ 2.78
UPF3A-209	ENST00000492270	TBC1D9B	Q66K14	1250 aa		32.4	■■■□□ 2.78
UPF3A-209	ENST00000492270	NPM2	Q86SE8	214 aa	Known RBP	32.4	■■■□□ 2.78
UPF3A-209	ENST00000492270	DZIP3	Q86Y13	1208 aa	Known RBP	32.4	■■■□□ 2.78
UPF3A-209	ENST00000492270	ANKRD31	Q8N7Z5	1873 aa		32.4	■■■□□ 2.78
UPF3A-209	ENST00000492270	DPEP1	P16444	411 aa		32.39	■■■□□ 2.78
UPF3A-209	ENST00000492270	ANP32C	O43423	234 aa		32.38	■■■□□ 2.77
UPF3A-209	ENST00000492270	GRIN3B	O60391	1043 aa		32.38	■■■□□ 2.77
UPF3A-209	ENST00000492270	ARFGEF1	Q9Y6D6	1849 aa		32.37	■■■□□ 2.77
UPF3A-209	ENST00000492270	DLEC1	Q9Y238	1755 aa		32.37	■■■□□ 2.77
UPF3A-209	ENST00000492270	SERPINB2	P05120	415 aa		32.37	■■■□□ 2.77
UPF3A-209	ENST00000492270	CARMIL3	Q8ND23	1372 aa		32.35	■■■□□ 2.77
UPF3A-209	ENST00000492270	APAF1	O14727	1248 aa		32.35	■■■□□ 2.77
UPF3A-209	ENST00000492270	NUP98	P52948	1817 aa		32.35	■■■□□ 2.77
UPF3A-209	ENST00000492270	BABAM1	Q9NWV8	329 aa		32.34	■■■□□ 2.77
UPF3A-209	ENST00000492270	KCNA3	P22001	575 aa		32.33	■■■□□ 2.77
UPF3A-209	ENST00000492270	LAS1L	Q9Y4W2	734 aa	Known RBP	32.32	■■■□□ 2.76
UPF3A-209	ENST00000492270	CHRNA5	P30532	468 aa		32.31	■■■□□ 2.76
UPF3A-209	ENST00000492270	CHL1	O00533	1208 aa		32.3	■■■□□ 2.76
UPF3A-209	ENST00000492270	COL11A2	P13942	1736 aa	Predicted RBP	32.3	■■■□□ 2.76
UPF3A-209	ENST00000492270	NGEF	Q8N5V2	710 aa		32.3	■■■□□ 2.76
UPF3A-209	ENST00000492270	MRS2	Q9HD23	443 aa		32.3	■■■□□ 2.76
UPF3A-209	ENST00000492270	BCS1L	Q9Y276	419 aa		32.3	■■■□□ 2.76
UPF3A-209	ENST00000492270	MYL6B	P14649	208 aa		32.28	■■■□□ 2.76
UPF3A-209	ENST00000492270	KRT24	Q2M2I5	525 aa		32.28	■■■□□ 2.76
UPF3A-209	ENST00000492270	SENP3-EIF4A1	A0A087X0R7	540 aa		32.27	■■■□□ 2.76
UPF3A-209	ENST00000492270	CCDC24	Q8N4L8	307 aa		32.27	■■■□□ 2.76
UPF3A-209	ENST00000492270	SETDB2	Q96T68	719 aa		32.26	■■■□□ 2.75
UPF3A-209	ENST00000492270	EIF2S2	P20042	333 aa	Known RBP	32.25	■■■□□ 2.75
UPF3A-209	ENST00000492270	HLF	Q16534	295 aa		32.25	■■■□□ 2.75
UPF3A-209	ENST00000492270	PRR5L	Q6MZQ0	368 aa		32.25	■■■□□ 2.75
UPF3A-209	ENST00000492270	CACNA1S	Q13698	1873 aa		32.25	■■■□□ 2.75
UPF3A-209	ENST00000492270	CLEC4G	Q6UXB4	293 aa		32.24	■■■□□ 2.75

Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms