RNA–Protein interactions for RNA: ENST00000491651.1

SMARCD3-214, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 4

Gene SMARCD3, Length 613 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-214ENST00000491651 MMP10P09238 476 aa23.17■■□□□ 1.3
SMARCD3-214ENST00000491651 SCN7AQ01118 1682 aa23.16■■□□□ 1.3
SMARCD3-214ENST00000491651 DCTN1Q14203 1278 aa23.16■■□□□ 1.3
SMARCD3-214ENST00000491651 ZBTB1Q9Y2K1 713 aa23.16■■□□□ 1.3
SMARCD3-214ENST00000491651 AFDNP55196 1824 aaKnown RBP23.15■■□□□ 1.3
SMARCD3-214ENST00000491651 KIAA1551Q9HCM1 1747 aa23.14■■□□□ 1.3
SMARCD3-214ENST00000491651 WDR43Q15061 677 aaKnown RBP eCLIP23.14■■□□□ 1.29
SMARCD3-214ENST00000491651 GPR162Q16538 588 aa23.14■■□□□ 1.29
SMARCD3-214ENST00000491651 N4BP2Q86UW6 1770 aaPredicted RBP23.14■■□□□ 1.29
SMARCD3-214ENST00000491651 ZPR1O75312 459 aa23.13■■□□□ 1.29
SMARCD3-214ENST00000491651 TAF7Q15545 349 aaPredicted RBP23.13■■□□□ 1.29
SMARCD3-214ENST00000491651 SRP68Q9UHB9 627 aaKnown RBP23.13■■□□□ 1.29
SMARCD3-214ENST00000491651 BCORQ6W2J9 1755 aa23.13■■□□□ 1.29
SMARCD3-214ENST00000491651 KCNQ3O43525 872 aa23.12■■□□□ 1.29
SMARCD3-214ENST00000491651 C10orf71Q711Q0 1435 aa23.12■■□□□ 1.29
SMARCD3-214ENST00000491651 PNISRQ8TF01 805 aaKnown RBP23.12■■□□□ 1.29
SMARCD3-214ENST00000491651 PARP3Q9Y6F1 533 aa23.12■■□□□ 1.29
SMARCD3-214ENST00000491651 BRCA1P38398 1863 aaKnown RBP23.11■■□□□ 1.29
SMARCD3-214ENST00000491651 ZNF316A6NFI3 1004 aaPredicted RBP23.11■■□□□ 1.29
SMARCD3-214ENST00000491651 CANXP27824 592 aaKnown RBP23.11■■□□□ 1.29
SMARCD3-214ENST00000491651 PELP1Q8IZL8 1130 aaKnown RBP23.11■■□□□ 1.29
SMARCD3-214ENST00000491651 NARFQ9UHQ1 456 aa23.11■■□□□ 1.29
SMARCD3-214ENST00000491651 YY1P25490 414 aa23.1■■□□□ 1.29
SMARCD3-214ENST00000491651 LMOD3Q0VAK6 560 aa23.1■■□□□ 1.29
SMARCD3-214ENST00000491651 NRXN2Q9P2S2 1712 aa23.09■■□□□ 1.29
SMARCD3-214ENST00000491651 A0A087WZG4 1122 aa23.09■■□□□ 1.29
SMARCD3-214ENST00000491651 SNRPA1P09661 255 aaKnown RBP23.09■■□□□ 1.29
SMARCD3-214ENST00000491651 EIF5P55010 431 aaKnown RBP23.09■■□□□ 1.29
SMARCD3-214ENST00000491651 USPL1Q5W0Q7 1092 aa23.09■■□□□ 1.29
SMARCD3-214ENST00000491651 FKBP8Q14318 412 aa23.08■■□□□ 1.29
SMARCD3-214ENST00000491651 IL6STP40189 918 aaPredicted RBP23.07■■□□□ 1.28
SMARCD3-214ENST00000491651 RIPK4P57078 832 aa23.07■■□□□ 1.28
SMARCD3-214ENST00000491651 NPM2Q86SE8 214 aaKnown RBP23.07■■□□□ 1.28
SMARCD3-214ENST00000491651 TMPOP42166 694 aaKnown RBP23.06■■□□□ 1.28
SMARCD3-214ENST00000491651 PXDNLA1KZ92 1463 aa23.05■■□□□ 1.28
SMARCD3-214ENST00000491651 GRIN3BO60391 1043 aa23.05■■□□□ 1.28
SMARCD3-214ENST00000491651 RUNDC1Q96C34 613 aa23.05■■□□□ 1.28
SMARCD3-214ENST00000491651 THUMPD2Q9BTF0 503 aaKnown RBP23.05■■□□□ 1.28
SMARCD3-214ENST00000491651 ARFGEF1Q9Y6D6 1849 aa23.05■■□□□ 1.28
SMARCD3-214ENST00000491651 CCDC146Q8IYE0 955 aa23.04■■□□□ 1.28
SMARCD3-214ENST00000491651 ZNF330Q9Y3S2 320 aaPredicted RBP23.04■■□□□ 1.28
SMARCD3-214ENST00000491651 A1BGP04217 495 aa23.03■■□□□ 1.28
SMARCD3-214ENST00000491651 YBX3P16989 372 aaKnown RBP eCLIP23.03■■□□□ 1.28
SMARCD3-214ENST00000491651 TGFB2P61812 414 aa23.03■■□□□ 1.28
SMARCD3-214ENST00000491651 DDR1Q08345 913 aa23.03■■□□□ 1.28
SMARCD3-214ENST00000491651 MIS18AQ9NYP9 233 aa23.03■■□□□ 1.28
SMARCD3-214ENST00000491651 ADAMTS8Q9UP79 889 aa23.03■■□□□ 1.28
SMARCD3-214ENST00000491651 USP16Q9Y5T5 823 aa23.03■■□□□ 1.28
SMARCD3-214ENST00000491651 DLEC1Q9Y238 1755 aa23.02■■□□□ 1.28
SMARCD3-214ENST00000491651 POLRMTO00411 1230 aaKnown RBP23.02■■□□□ 1.28
SMARCD3-214ENST00000491651 TM4SF1P30408 202 aa23.02■■□□□ 1.28
SMARCD3-214ENST00000491651 GOLGB1Q14789 3259 aaKnown RBP23.02■■□□□ 1.28
SMARCD3-214ENST00000491651 PRAMEF22A3QJZ6 481 aa23.01■■□□□ 1.27
SMARCD3-214ENST00000491651 UTRNP46939 3433 aa23.01■■□□□ 1.27
SMARCD3-214ENST00000491651 NFIXQ14938 502 aa23■■□□□ 1.27
SMARCD3-214ENST00000491651 BCL2L12Q9HB09 334 aa23■■□□□ 1.27
SMARCD3-214ENST00000491651 BABAM1Q9NWV8 329 aa23■■□□□ 1.27
SMARCD3-214ENST00000491651 EIF4A1P60842 406 aaKnown RBP22.99■■□□□ 1.27
SMARCD3-214ENST00000491651 TSPYL4Q9UJ04 414 aa22.99■■□□□ 1.27
SMARCD3-214ENST00000491651 RRP7AQ9Y3A4 280 aaKnown RBP22.99■■□□□ 1.27
SMARCD3-214ENST00000491651 TBC1D2BQ9UPU7 963 aa22.98■■□□□ 1.27
SMARCD3-214ENST00000491651 NUP98P52948 1817 aa22.98■■□□□ 1.27
SMARCD3-214ENST00000491651 ANKRD31Q8N7Z5 1873 aa22.98■■□□□ 1.27
SMARCD3-214ENST00000491651 GIGYF1O75420 1035 aaPredicted RBP22.97■■□□□ 1.27
SMARCD3-214ENST00000491651 NEUROD2Q15784 382 aa22.97■■□□□ 1.27
SMARCD3-214ENST00000491651 DZIP3Q86Y13 1208 aaKnown RBP22.97■■□□□ 1.27
SMARCD3-214ENST00000491651 ANP32CO43423 234 aa22.96■■□□□ 1.27
SMARCD3-214ENST00000491651 PIP4K2AP48426 406 aaPredicted RBP22.95■■□□□ 1.26
SMARCD3-214ENST00000491651 CARMIL3Q8ND23 1372 aa22.94■■□□□ 1.26
SMARCD3-214ENST00000491651 A0A0G2JLW4 131 aa22.94■■□□□ 1.26
SMARCD3-214ENST00000491651 CAMTA2O94983 1202 aa22.94■■□□□ 1.26
SMARCD3-214ENST00000491651 SERPINB2P05120 415 aa22.94■■□□□ 1.26
SMARCD3-214ENST00000491651 DPEP1P16444 411 aa22.94■■□□□ 1.26
SMARCD3-214ENST00000491651 WWC3Q9ULE0 1092 aa22.94■■□□□ 1.26
SMARCD3-214ENST00000491651 NBPF26B4DH59 902 aa22.93■■□□□ 1.26
SMARCD3-214ENST00000491651 TBC1D9BQ66K14 1250 aa22.93■■□□□ 1.26
SMARCD3-214ENST00000491651 NBPF10Q6P3W6 841 aaKnown RBP22.93■■□□□ 1.26
SMARCD3-214ENST00000491651 BICDL1Q6ZP65 573 aa22.93■■□□□ 1.26
SMARCD3-214ENST00000491651 NBPF15Q8N660 670 aa22.93■■□□□ 1.26
SMARCD3-214ENST00000491651 TRIM35Q9UPQ4 493 aa22.93■■□□□ 1.26
SMARCD3-214ENST00000491651 ZNF652Q9Y2D9 606 aa22.93■■□□□ 1.26
SMARCD3-214ENST00000491651 ERBB4Q15303 1308 aa22.92■■□□□ 1.26
SMARCD3-214ENST00000491651 RGL2O15211 777 aa22.92■■□□□ 1.26
SMARCD3-214ENST00000491651 CLEC4GQ6UXB4 293 aa22.91■■□□□ 1.26
SMARCD3-214ENST00000491651 CACNA1SQ13698 1873 aa22.9■■□□□ 1.26
SMARCD3-214ENST00000491651 SETDB2Q96T68 719 aa22.9■■□□□ 1.26
SMARCD3-214ENST00000491651 BCS1LQ9Y276 419 aa22.9■■□□□ 1.26
SMARCD3-214ENST00000491651 COL11A2P13942 1736 aaPredicted RBP22.89■■□□□ 1.26
SMARCD3-214ENST00000491651 PIM2Q9P1W9 311 aa22.89■■□□□ 1.25
SMARCD3-214ENST00000491651 CHL1O00533 1208 aa22.88■■□□□ 1.25
SMARCD3-214ENST00000491651 APAF1O14727 1248 aa22.88■■□□□ 1.25
SMARCD3-214ENST00000491651 KCNA3P22001 575 aa22.88■■□□□ 1.25
SMARCD3-214ENST00000491651 ARFGEF2Q9Y6D5 1785 aa22.88■■□□□ 1.25
SMARCD3-214ENST00000491651 ANKRD36CQ5JPF3 1778 aa22.87■■□□□ 1.25
SMARCD3-214ENST00000491651 CCDC184Q52MB2 194 aa22.87■■□□□ 1.25
SMARCD3-214ENST00000491651 ZNF784Q8NCA9 323 aaPredicted RBP22.87■■□□□ 1.25
SMARCD3-214ENST00000491651 NPHP1O15259 732 aa22.86■■□□□ 1.25
SMARCD3-214ENST00000491651 CHRNA5P30532 468 aa22.86■■□□□ 1.25
SMARCD3-214ENST00000491651 CALD1Q05682 793 aaKnown RBP22.86■■□□□ 1.25
SMARCD3-214ENST00000491651 CNBD1Q8NA66 436 aa22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms