RNA–Protein interactions for RNA: ENST00000490690.1

SHROOM3-209, Transcript of shroom family member 3, humanhuman

TSL 4

Gene SHROOM3, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-209ENST00000490690 SLC15A2Q16348 729 aa25.6■■□□□ 1.69
SHROOM3-209ENST00000490690 RTCBQ9Y3I0 505 aaKnown RBP25.6■■□□□ 1.69
SHROOM3-209ENST00000490690 TWISTNBQ3B726 338 aaPredicted RBP25.59■■□□□ 1.69
SHROOM3-209ENST00000490690 TRMT2AQ8IZ69 625 aaKnown RBP25.59■■□□□ 1.69
SHROOM3-209ENST00000490690 AKT1S1Q96B36 256 aa25.59■■□□□ 1.69
SHROOM3-209ENST00000490690 TFCP2L1Q9NZI6 479 aa25.59■■□□□ 1.69
SHROOM3-209ENST00000490690 NUP188Q5SRE5 1749 aa25.58■■□□□ 1.69
SHROOM3-209ENST00000490690 SSFA2P28290 1259 aa25.58■■□□□ 1.69
SHROOM3-209ENST00000490690 KCNQ4P56696 695 aa25.58■■□□□ 1.69
SHROOM3-209ENST00000490690 HDGFL1Q5TGJ6 251 aa25.58■■□□□ 1.69
SHROOM3-209ENST00000490690 SPINK5Q9NQ38 1064 aaPredicted RBP25.58■■□□□ 1.69
SHROOM3-209ENST00000490690 USP16Q9Y5T5 823 aa25.58■■□□□ 1.69
SHROOM3-209ENST00000490690 C4BP0C0L5 1744 aa25.57■■□□□ 1.68
SHROOM3-209ENST00000490690 TJP1Q07157 1748 aa25.57■■□□□ 1.68
SHROOM3-209ENST00000490690 A0A087WZG4 1122 aa25.57■■□□□ 1.68
SHROOM3-209ENST00000490690 GNPATO15228 680 aa25.57■■□□□ 1.68
SHROOM3-209ENST00000490690 RPS6KA4O75676 772 aa25.57■■□□□ 1.68
SHROOM3-209ENST00000490690 CCDC30Q5VVM6 783 aa25.57■■□□□ 1.68
SHROOM3-209ENST00000490690 IL6STP40189 918 aaPredicted RBP25.56■■□□□ 1.68
SHROOM3-209ENST00000490690 EXOSC9Q06265 439 aaKnown RBP25.56■■□□□ 1.68
SHROOM3-209ENST00000490690 COL5A3P25940 1745 aaPredicted RBP25.55■■□□□ 1.68
SHROOM3-209ENST00000490690 LAMB4A4D0S4 1761 aa25.55■■□□□ 1.68
SHROOM3-209ENST00000490690 C8orf58Q8NAV2 365 aa25.55■■□□□ 1.68
SHROOM3-209ENST00000490690 CDCA7LQ96GN5 454 aa25.55■■□□□ 1.68
SHROOM3-209ENST00000490690 STK31Q9BXU1 1019 aa25.55■■□□□ 1.68
SHROOM3-209ENST00000490690 DBF4Q9UBU7 674 aaPredicted RBP25.55■■□□□ 1.68
SHROOM3-209ENST00000490690 TAF1LQ8IZX4 1826 aa25.55■■□□□ 1.68
SHROOM3-209ENST00000490690 EIF2S2P20042 333 aaKnown RBP25.54■■□□□ 1.68
SHROOM3-209ENST00000490690 INTS5Q6P9B9 1019 aaKnown RBP25.53■■□□□ 1.68
SHROOM3-209ENST00000490690 ELL2O00472 640 aaPredicted RBP25.52■■□□□ 1.68
SHROOM3-209ENST00000490690 KRT24Q2M2I5 525 aa25.52■■□□□ 1.68
SHROOM3-209ENST00000490690 TRAPPC3LQ5T215 181 aa25.52■■□□□ 1.68
SHROOM3-209ENST00000490690 YTHDC1Q96MU7 727 aaKnown RBP25.52■■□□□ 1.68
SHROOM3-209ENST00000490690 ZBTB1Q9Y2K1 713 aa25.52■■□□□ 1.68
SHROOM3-209ENST00000490690 PRAMEF22A3QJZ6 481 aa25.51■■□□□ 1.67
SHROOM3-209ENST00000490690 CANXP27824 592 aaKnown RBP25.51■■□□□ 1.67
SHROOM3-209ENST00000490690 ZNF827Q17R98 1081 aa25.51■■□□□ 1.67
SHROOM3-209ENST00000490690 ANO8Q9HCE9 1232 aaPredicted RBP25.51■■□□□ 1.67
SHROOM3-209ENST00000490690 DDX21Q9NR30 783 aaKnown RBP eCLIP25.51■■□□□ 1.67
SHROOM3-209ENST00000490690 HYPKQ9NX55 129 aa25.51■■□□□ 1.67
SHROOM3-209ENST00000490690 VAMP4O75379 141 aa25.5■■□□□ 1.67
SHROOM3-209ENST00000490690 A1BGP04217 495 aa25.5■■□□□ 1.67
SHROOM3-209ENST00000490690 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.49■■□□□ 1.67
SHROOM3-209ENST00000490690 EIF5P55010 431 aaKnown RBP25.49■■□□□ 1.67
SHROOM3-209ENST00000490690 TSPYL6Q8N831 410 aa25.49■■□□□ 1.67
SHROOM3-209ENST00000490690 SLC16A10Q8TF71 515 aa25.49■■□□□ 1.67
SHROOM3-209ENST00000490690 COL15A1P39059 1388 aa25.48■■□□□ 1.67
SHROOM3-209ENST00000490690 RGL2O15211 777 aa25.48■■□□□ 1.67
SHROOM3-209ENST00000490690 RFC4P35249 363 aa25.48■■□□□ 1.67
SHROOM3-209ENST00000490690 PNPLA7Q6ZV29 1317 aa25.45■■□□□ 1.66
SHROOM3-209ENST00000490690 ZPR1O75312 459 aa25.45■■□□□ 1.66
SHROOM3-209ENST00000490690 PHF14O94880 888 aa25.45■■□□□ 1.66
SHROOM3-209ENST00000490690 ALDH1L2Q3SY69 923 aa25.45■■□□□ 1.66
SHROOM3-209ENST00000490690 KIF6Q6ZMV9 814 aa25.45■■□□□ 1.66
SHROOM3-209ENST00000490690 CHPF2Q9P2E5 772 aa25.45■■□□□ 1.66
SHROOM3-209ENST00000490690 ZNF330Q9Y3S2 320 aaPredicted RBP25.45■■□□□ 1.66
SHROOM3-209ENST00000490690 QSER1Q2KHR3 1735 aa25.45■■□□□ 1.66
SHROOM3-209ENST00000490690 NBPF26B4DH59 902 aa25.44■■□□□ 1.66
SHROOM3-209ENST00000490690 R3HDM1Q15032 1099 aaKnown RBP25.44■■□□□ 1.66
SHROOM3-209ENST00000490690 NBPF10Q6P3W6 841 aaKnown RBP25.44■■□□□ 1.66
SHROOM3-209ENST00000490690 NBPF15Q8N660 670 aa25.44■■□□□ 1.66
SHROOM3-209ENST00000490690 MSH5O43196 834 aa25.43■■□□□ 1.66
SHROOM3-209ENST00000490690 MYL6BP14649 208 aa25.43■■□□□ 1.66
SHROOM3-209ENST00000490690 NECTIN2Q92692 538 aa25.43■■□□□ 1.66
SHROOM3-209ENST00000490690 ZNF652Q9Y2D9 606 aa25.43■■□□□ 1.66
SHROOM3-209ENST00000490690 DDX58O95786 925 aaKnown RBP25.42■■□□□ 1.66
SHROOM3-209ENST00000490690 PDIA6Q15084 440 aa25.42■■□□□ 1.66
SHROOM3-209ENST00000490690 ARHGEF1Q92888 912 aaKnown RBP25.42■■□□□ 1.66
SHROOM3-209ENST00000490690 NARFQ9UHQ1 456 aa25.42■■□□□ 1.66
SHROOM3-209ENST00000490690 UBR3Q6ZT12 1888 aa25.41■■□□□ 1.66
SHROOM3-209ENST00000490690 DZIP3Q86Y13 1208 aaKnown RBP25.41■■□□□ 1.66
SHROOM3-209ENST00000490690 MYH14Q7Z406 1995 aaKnown RBP25.41■■□□□ 1.66
SHROOM3-209ENST00000490690 SLC4A2P04920 1241 aa25.4■■□□□ 1.66
SHROOM3-209ENST00000490690 COL23A1Q86Y22 540 aaPredicted RBP25.4■■□□□ 1.66
SHROOM3-209ENST00000490690 USP42Q9H9J4 1324 aaKnown RBP25.39■■□□□ 1.66
SHROOM3-209ENST00000490690 ERVV-1B6SEH8 477 aa25.39■■□□□ 1.66
SHROOM3-209ENST00000490690 CLEC4GQ6UXB4 293 aa25.39■■□□□ 1.66
SHROOM3-209ENST00000490690 ARXQ96QS3 562 aa25.39■■□□□ 1.66
SHROOM3-209ENST00000490690 NLGN1Q8N2Q7 840 aa25.38■■□□□ 1.65
SHROOM3-209ENST00000490690 LRP10Q7Z4F1 713 aa25.37■■□□□ 1.65
SHROOM3-209ENST00000490690 PIP4K2AP48426 406 aaPredicted RBP25.36■■□□□ 1.65
SHROOM3-209ENST00000490690 BRPF1P55201 1214 aaPredicted RBP25.36■■□□□ 1.65
SHROOM3-209ENST00000490690 HSP90AB3PQ58FF7 597 aa25.36■■□□□ 1.65
SHROOM3-209ENST00000490690 COPS6Q7L5N1 327 aa25.36■■□□□ 1.65
SHROOM3-209ENST00000490690 XAGE3Q8WTP9 111 aa25.36■■□□□ 1.65
SHROOM3-209ENST00000490690 MTFR1LQ9H019 292 aa25.36■■□□□ 1.65
SHROOM3-209ENST00000490690 SMC4Q9NTJ3 1288 aa25.36■■□□□ 1.65
SHROOM3-209ENST00000490690 MAP3K15Q6ZN16 1313 aa25.36■■□□□ 1.65
SHROOM3-209ENST00000490690 PROSER3Q2NL68 480 aa25.35■■□□□ 1.65
SHROOM3-209ENST00000490690 KIF16BQ96L93 1317 aa25.35■■□□□ 1.65
SHROOM3-209ENST00000490690 PSDA5PKW4 1024 aaPredicted RBP25.34■■□□□ 1.65
SHROOM3-209ENST00000490690 PLBD2Q8NHP8 589 aa25.34■■□□□ 1.65
SHROOM3-209ENST00000490690 TBC1D2BQ9UPU7 963 aa25.34■■□□□ 1.65
SHROOM3-209ENST00000490690 PTPRCP08575 1304 aa25.34■■□□□ 1.65
SHROOM3-209ENST00000490690 CACNA1FO60840 1977 aa25.33■■□□□ 1.65
SHROOM3-209ENST00000490690 ANXA1P04083 346 aa25.33■■□□□ 1.65
SHROOM3-209ENST00000490690 RARSP54136 660 aaKnown RBP25.33■■□□□ 1.65
SHROOM3-209ENST00000490690 AIMP1Q12904 312 aaKnown RBP25.33■■□□□ 1.65
SHROOM3-209ENST00000490690 FLIIQ13045 1269 aa25.33■■□□□ 1.65
SHROOM3-209ENST00000490690 ANKRD13DQ6ZTN6 518 aa25.33■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms