RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 ARHGAP45Q92619 1136 aa20.29■□□□□ 0.84
SYNE1-227ENST00000489156 HEG1Q9ULI3 1381 aa20.29■□□□□ 0.84
SYNE1-227ENST00000489156 KCNQ4P56696 695 aa20.28■□□□□ 0.84
SYNE1-227ENST00000489156 SF3B2Q13435 895 aaKnown RBP20.28■□□□□ 0.84
SYNE1-227ENST00000489156 ATF7IPQ6VMQ6 1270 aa20.28■□□□□ 0.84
SYNE1-227ENST00000489156 C5P01031 1676 aa20.28■□□□□ 0.84
SYNE1-227ENST00000489156 PLSCR1O15162 318 aa20.28■□□□□ 0.84
SYNE1-227ENST00000489156 GIGYF1O75420 1035 aaPredicted RBP20.28■□□□□ 0.84
SYNE1-227ENST00000489156 ATP6V1AP38606 617 aa20.27■□□□□ 0.84
SYNE1-227ENST00000489156 DZIP1LQ8IYY4 767 aaKnown RBP20.27■□□□□ 0.84
SYNE1-227ENST00000489156 NOB1Q9ULX3 412 aaKnown RBP20.27■□□□□ 0.84
SYNE1-227ENST00000489156 SNRPA1P09661 255 aaKnown RBP20.26■□□□□ 0.83
SYNE1-227ENST00000489156 MRPL50Q8N5N7 158 aaKnown RBP20.26■□□□□ 0.83
SYNE1-227ENST00000489156 PANK1Q8TE04 598 aa20.26■□□□□ 0.83
SYNE1-227ENST00000489156 TRIM27P14373 513 aa20.26■□□□□ 0.83
SYNE1-227ENST00000489156 FTSJ3Q8IY81 847 aaKnown RBP20.26■□□□□ 0.83
SYNE1-227ENST00000489156 EN1Q05925 392 aaPredicted RBP20.25■□□□□ 0.83
SYNE1-227ENST00000489156 CCDC125Q86Z20 511 aa20.25■□□□□ 0.83
SYNE1-227ENST00000489156 DNAJC10Q8IXB1 793 aa20.25■□□□□ 0.83
SYNE1-227ENST00000489156 VSIG10Q8N0Z9 540 aa20.25■□□□□ 0.83
SYNE1-227ENST00000489156 UPF1Q92900 1129 aaKnown RBP eCLIP20.25■□□□□ 0.83
SYNE1-227ENST00000489156 CCNL1Q9UK58 526 aaPredicted RBP20.25■□□□□ 0.83
SYNE1-227ENST00000489156 USP16Q9Y5T5 823 aa20.25■□□□□ 0.83
SYNE1-227ENST00000489156 TJP1Q07157 1748 aa20.25■□□□□ 0.83
SYNE1-227ENST00000489156 DEFB132Q7Z7B7 95 aa20.24■□□□□ 0.83
SYNE1-227ENST00000489156 PROM2Q8N271 834 aa20.24■□□□□ 0.83
SYNE1-227ENST00000489156 COG6Q9Y2V7 657 aa20.24■□□□□ 0.83
SYNE1-227ENST00000489156 TAF1LQ8IZX4 1826 aa20.24■□□□□ 0.83
SYNE1-227ENST00000489156 RLBP1P12271 317 aa20.24■□□□□ 0.83
SYNE1-227ENST00000489156 EIF2S2P20042 333 aaKnown RBP20.24■□□□□ 0.83
SYNE1-227ENST00000489156 ITPK1Q13572 414 aa20.24■□□□□ 0.83
SYNE1-227ENST00000489156 TXNRD1Q16881 649 aa20.24■□□□□ 0.83
SYNE1-227ENST00000489156 ZNF831Q5JPB2 1677 aa20.23■□□□□ 0.83
SYNE1-227ENST00000489156 BAG6P46379 1132 aa20.23■□□□□ 0.83
SYNE1-227ENST00000489156 NECTIN2Q92692 538 aa20.23■□□□□ 0.83
SYNE1-227ENST00000489156 LRRC4BQ9NT99 713 aa20.23■□□□□ 0.83
SYNE1-227ENST00000489156 RGPD3A6NKT7 1758 aaPredicted RBP20.23■□□□□ 0.83
SYNE1-227ENST00000489156 RGPD4Q7Z3J3 1758 aa20.23■□□□□ 0.83
SYNE1-227ENST00000489156 MVPQ14764 893 aaKnown RBP20.22■□□□□ 0.83
SYNE1-227ENST00000489156 EZH2Q15910 746 aaKnown RBP20.22■□□□□ 0.83
SYNE1-227ENST00000489156 CHMP4AQ9BY43 222 aa20.22■□□□□ 0.83
SYNE1-227ENST00000489156 LAMB4A4D0S4 1761 aa20.22■□□□□ 0.83
SYNE1-227ENST00000489156 CLUAP1Q96AJ1 413 aa20.22■□□□□ 0.83
SYNE1-227ENST00000489156 CAMKK2Q96RR4 588 aa20.22■□□□□ 0.83
SYNE1-227ENST00000489156 HOXB7P09629 217 aa20.21■□□□□ 0.83
SYNE1-227ENST00000489156 TEX13AQ9BXU3 409 aaPredicted RBP20.21■□□□□ 0.83
SYNE1-227ENST00000489156 MYH14Q7Z406 1995 aaKnown RBP20.21■□□□□ 0.83
SYNE1-227ENST00000489156 COL5A3P25940 1745 aaPredicted RBP20.2■□□□□ 0.83
SYNE1-227ENST00000489156 SLC27A3Q5K4L6 730 aa20.2■□□□□ 0.82
SYNE1-227ENST00000489156 CICQ96RK0 1608 aaPredicted RBP20.2■□□□□ 0.82
SYNE1-227ENST00000489156 TCERG1O14776 1098 aaKnown RBP20.2■□□□□ 0.82
SYNE1-227ENST00000489156 HDGFL1Q5TGJ6 251 aa20.2■□□□□ 0.82
SYNE1-227ENST00000489156 LINC00116Q8NCU8 138 aa20.2■□□□□ 0.82
SYNE1-227ENST00000489156 DDX19BQ9UMR2 479 aa20.2■□□□□ 0.82
SYNE1-227ENST00000489156 TNNQ9UQP3 1299 aa20.2■□□□□ 0.82
SYNE1-227ENST00000489156 STARD3NLO95772 234 aa20.19■□□□□ 0.82
SYNE1-227ENST00000489156 CYP19A1P11511 503 aaPredicted RBP20.19■□□□□ 0.82
SYNE1-227ENST00000489156 API5Q9BZZ5 524 aaKnown RBP20.19■□□□□ 0.82
SYNE1-227ENST00000489156 A1BGP04217 495 aa20.18■□□□□ 0.82
SYNE1-227ENST00000489156 PIP4K2AP48426 406 aaPredicted RBP20.18■□□□□ 0.82
SYNE1-227ENST00000489156 CCDC30Q5VVM6 783 aa20.18■□□□□ 0.82
SYNE1-227ENST00000489156 PTPRCP08575 1304 aa20.17■□□□□ 0.82
SYNE1-227ENST00000489156 CRKLP46109 303 aaKnown RBP20.16■□□□□ 0.82
SYNE1-227ENST00000489156 CHMP4BQ9H444 224 aaKnown RBP20.16■□□□□ 0.82
SYNE1-227ENST00000489156 CACNA1FO60840 1977 aa20.16■□□□□ 0.82
SYNE1-227ENST00000489156 STK31Q9BXU1 1019 aa20.16■□□□□ 0.82
SYNE1-227ENST00000489156 ANXA1P04083 346 aa20.15■□□□□ 0.82
SYNE1-227ENST00000489156 SLC4A2P04920 1241 aa20.15■□□□□ 0.82
SYNE1-227ENST00000489156 CHPF2Q9P2E5 772 aa20.15■□□□□ 0.82
SYNE1-227ENST00000489156 ABCC4O15439 1325 aa20.15■□□□□ 0.82
SYNE1-227ENST00000489156 RREB1Q92766 1687 aa20.15■□□□□ 0.82
SYNE1-227ENST00000489156 C4BP0C0L5 1744 aa20.14■□□□□ 0.82
SYNE1-227ENST00000489156 INTS5Q6P9B9 1019 aaKnown RBP20.14■□□□□ 0.81
SYNE1-227ENST00000489156 CENPQQ7L2Z9 268 aaPredicted RBP20.14■□□□□ 0.81
SYNE1-227ENST00000489156 ITPRIPQ8IWB1 547 aa20.14■□□□□ 0.81
SYNE1-227ENST00000489156 TMEM57Q8N5G2 664 aa20.14■□□□□ 0.81
SYNE1-227ENST00000489156 ZBTB1Q9Y2K1 713 aa20.14■□□□□ 0.81
SYNE1-227ENST00000489156 NBPF26B4DH59 902 aa20.13■□□□□ 0.81
SYNE1-227ENST00000489156 PDIA6Q15084 440 aa20.13■□□□□ 0.81
SYNE1-227ENST00000489156 PROSER3Q2NL68 480 aa20.13■□□□□ 0.81
SYNE1-227ENST00000489156 NBPF14Q5TI25 921 aa20.13■□□□□ 0.81
SYNE1-227ENST00000489156 NBPF10Q6P3W6 841 aaKnown RBP20.13■□□□□ 0.81
SYNE1-227ENST00000489156 NBPF15Q8N660 670 aa20.13■□□□□ 0.81
SYNE1-227ENST00000489156 CCDC87Q9NVE4 849 aa20.13■□□□□ 0.81
SYNE1-227ENST00000489156 KDM2BQ8NHM5 1336 aa20.13■□□□□ 0.81
SYNE1-227ENST00000489156 MYL6BP14649 208 aa20.13■□□□□ 0.81
SYNE1-227ENST00000489156 DBF4Q9UBU7 674 aaPredicted RBP20.13■□□□□ 0.81
SYNE1-227ENST00000489156 NUP188Q5SRE5 1749 aa20.12■□□□□ 0.81
SYNE1-227ENST00000489156 RC3H1Q5TC82 1133 aaKnown RBP20.11■□□□□ 0.81
SYNE1-227ENST00000489156 CNTNAP4Q9C0A0 1308 aa20.11■□□□□ 0.81
SYNE1-227ENST00000489156 DDX21Q9NR30 783 aaKnown RBP eCLIP20.11■□□□□ 0.81
SYNE1-227ENST00000489156 ZNF330Q9Y3S2 320 aaPredicted RBP20.11■□□□□ 0.81
SYNE1-227ENST00000489156 ERBB4Q15303 1308 aa20.1■□□□□ 0.81
SYNE1-227ENST00000489156 SMIM5Q71RC9 77 aa20.1■□□□□ 0.81
SYNE1-227ENST00000489156 GNPATO15228 680 aa20.09■□□□□ 0.81
SYNE1-227ENST00000489156 AK7Q96M32 723 aa20.09■□□□□ 0.81
SYNE1-227ENST00000489156 ZBTB40Q9NUA8 1239 aa20.09■□□□□ 0.81
SYNE1-227ENST00000489156 UBR3Q6ZT12 1888 aa20.09■□□□□ 0.81
SYNE1-227ENST00000489156 HMGB2P26583 209 aaKnown RBP20.09■□□□□ 0.81
SYNE1-227ENST00000489156 ZNF827Q17R98 1081 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms