RNA–Protein interactions for RNA: ENST00000489037.1

BRCA1-218, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 4

Gene BRCA1, Length 455 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-218ENST00000489037 ADAMTS8Q9UP79 889 aa18.8■□□□□ 0.6
BRCA1-218ENST00000489037 TMPOP42166 694 aaKnown RBP18.79■□□□□ 0.6
BRCA1-218ENST00000489037 KCNQ3O43525 872 aa18.78■□□□□ 0.6
BRCA1-218ENST00000489037 ZPR1O75312 459 aa18.78■□□□□ 0.6
BRCA1-218ENST00000489037 C4AP0C0L4 1744 aa18.77■□□□□ 0.6
BRCA1-218ENST00000489037 SNRPA1P09661 255 aaKnown RBP18.77■□□□□ 0.6
BRCA1-218ENST00000489037 CANXP27824 592 aaKnown RBP18.77■□□□□ 0.6
BRCA1-218ENST00000489037 NEUROD2Q15784 382 aa18.77■□□□□ 0.6
BRCA1-218ENST00000489037 ZBTB1Q9Y2K1 713 aa18.77■□□□□ 0.6
BRCA1-218ENST00000489037 SOS1Q07889 1333 aaPredicted RBP18.76■□□□□ 0.59
BRCA1-218ENST00000489037 A0A087WZG4 1122 aa18.76■□□□□ 0.59
BRCA1-218ENST00000489037 MMP10P09238 476 aa18.75■□□□□ 0.59
BRCA1-218ENST00000489037 GYS1P13807 737 aa18.75■□□□□ 0.59
BRCA1-218ENST00000489037 THUMPD2Q9BTF0 503 aaKnown RBP18.75■□□□□ 0.59
BRCA1-218ENST00000489037 MIS18AQ9NYP9 233 aa18.75■□□□□ 0.59
BRCA1-218ENST00000489037 CD2APQ9Y5K6 639 aa18.75■□□□□ 0.59
BRCA1-218ENST00000489037 USP42Q9H9J4 1324 aaKnown RBP18.74■□□□□ 0.59
BRCA1-218ENST00000489037 COL15A1P39059 1388 aa18.74■□□□□ 0.59
BRCA1-218ENST00000489037 RRP7AQ9Y3A4 280 aaKnown RBP18.74■□□□□ 0.59
BRCA1-218ENST00000489037 ZNF330Q9Y3S2 320 aaPredicted RBP18.74■□□□□ 0.59
BRCA1-218ENST00000489037 PARP3Q9Y6F1 533 aa18.74■□□□□ 0.59
BRCA1-218ENST00000489037 SRP68Q9UHB9 627 aaKnown RBP18.73■□□□□ 0.59
BRCA1-218ENST00000489037 KDM3BQ7LBC6 1761 aa18.73■□□□□ 0.59
BRCA1-218ENST00000489037 IL6STP40189 918 aaPredicted RBP18.72■□□□□ 0.59
BRCA1-218ENST00000489037 USPL1Q5W0Q7 1092 aa18.72■□□□□ 0.59
BRCA1-218ENST00000489037 NARFQ9UHQ1 456 aa18.72■□□□□ 0.59
BRCA1-218ENST00000489037 TSPYL4Q9UJ04 414 aa18.72■□□□□ 0.59
BRCA1-218ENST00000489037 A1BGP04217 495 aa18.71■□□□□ 0.59
BRCA1-218ENST00000489037 EIF5P55010 431 aaKnown RBP18.71■□□□□ 0.59
BRCA1-218ENST00000489037 GPR162Q16538 588 aa18.71■□□□□ 0.59
BRCA1-218ENST00000489037 MRS2Q9HD23 443 aa18.71■□□□□ 0.59
BRCA1-218ENST00000489037 BABAM1Q9NWV8 329 aa18.71■□□□□ 0.59
BRCA1-218ENST00000489037 USP16Q9Y5T5 823 aa18.71■□□□□ 0.59
BRCA1-218ENST00000489037 PELP1Q8IZL8 1130 aaKnown RBP18.7■□□□□ 0.58
BRCA1-218ENST00000489037 FKBP8Q14318 412 aa18.69■□□□□ 0.58
BRCA1-218ENST00000489037 NLGN2Q8NFZ4 835 aa18.69■□□□□ 0.58
BRCA1-218ENST00000489037 EIF4A1P60842 406 aaKnown RBP18.68■□□□□ 0.58
BRCA1-218ENST00000489037 LAS1LQ9Y4W2 734 aaKnown RBP18.68■□□□□ 0.58
BRCA1-218ENST00000489037 PRAMEF22A3QJZ6 481 aa18.67■□□□□ 0.58
BRCA1-218ENST00000489037 APAF1O14727 1248 aa18.67■□□□□ 0.58
BRCA1-218ENST00000489037 CCDC184Q52MB2 194 aa18.67■□□□□ 0.58
BRCA1-218ENST00000489037 LAMB4A4D0S4 1761 aa18.67■□□□□ 0.58
BRCA1-218ENST00000489037 GIGYF1O75420 1035 aaPredicted RBP18.66■□□□□ 0.58
BRCA1-218ENST00000489037 CALD1Q05682 793 aaKnown RBP18.66■□□□□ 0.58
BRCA1-218ENST00000489037 TRIM35Q9UPQ4 493 aa18.66■□□□□ 0.58
BRCA1-218ENST00000489037 TBC1D2BQ9UPU7 963 aa18.66■□□□□ 0.58
BRCA1-218ENST00000489037 DZIP3Q86Y13 1208 aaKnown RBP18.65■□□□□ 0.58
BRCA1-218ENST00000489037 CHD4Q14839 1912 aa18.64■□□□□ 0.58
BRCA1-218ENST00000489037 TM4SF1P30408 202 aa18.64■□□□□ 0.57
BRCA1-218ENST00000489037 TGFB2P61812 414 aa18.64■□□□□ 0.57
BRCA1-218ENST00000489037 KIF13BQ9NQT8 1826 aa18.64■□□□□ 0.57
BRCA1-218ENST00000489037 GRIN3BO60391 1043 aa18.63■□□□□ 0.57
BRCA1-218ENST00000489037 PIP4K2AP48426 406 aaPredicted RBP18.63■□□□□ 0.57
BRCA1-218ENST00000489037 POLRMTO00411 1230 aaKnown RBP18.62■□□□□ 0.57
BRCA1-218ENST00000489037 CHL1O00533 1208 aa18.62■□□□□ 0.57
BRCA1-218ENST00000489037 DDR1Q08345 913 aa18.62■□□□□ 0.57
BRCA1-218ENST00000489037 NFIXQ14938 502 aa18.62■□□□□ 0.57
BRCA1-218ENST00000489037 BICDL1Q6ZP65 573 aa18.62■□□□□ 0.57
BRCA1-218ENST00000489037 BCL2L12Q9HB09 334 aa18.62■□□□□ 0.57
BRCA1-218ENST00000489037 ZNF652Q9Y2D9 606 aa18.62■□□□□ 0.57
BRCA1-218ENST00000489037 AFDNP55196 1824 aaKnown RBP18.6■□□□□ 0.57
BRCA1-218ENST00000489037 SCN7AQ01118 1682 aa18.6■□□□□ 0.57
BRCA1-218ENST00000489037 C10orf71Q711Q0 1435 aa18.6■□□□□ 0.57
BRCA1-218ENST00000489037 ERBB4Q15303 1308 aa18.6■□□□□ 0.57
BRCA1-218ENST00000489037 NBPF26B4DH59 902 aa18.6■□□□□ 0.57
BRCA1-218ENST00000489037 SERPINB2P05120 415 aa18.6■□□□□ 0.57
BRCA1-218ENST00000489037 EIF2S2P20042 333 aaKnown RBP18.6■□□□□ 0.57
BRCA1-218ENST00000489037 NBPF10Q6P3W6 841 aaKnown RBP18.6■□□□□ 0.57
BRCA1-218ENST00000489037 NBPF15Q8N660 670 aa18.6■□□□□ 0.57
BRCA1-218ENST00000489037 CFAP44Q96MT7 982 aa18.6■□□□□ 0.57
BRCA1-218ENST00000489037 N4BP2Q86UW6 1770 aaPredicted RBP18.6■□□□□ 0.57
BRCA1-218ENST00000489037 NPHP1O15259 732 aa18.59■□□□□ 0.57
BRCA1-218ENST00000489037 CAMTA2O94983 1202 aa18.59■□□□□ 0.57
BRCA1-218ENST00000489037 YY1P25490 414 aa18.59■□□□□ 0.57
BRCA1-218ENST00000489037 GNAI1P63096 354 aa18.59■□□□□ 0.57
BRCA1-218ENST00000489037 CLEC4GQ6UXB4 293 aa18.59■□□□□ 0.57
BRCA1-218ENST00000489037 NGEFQ8N5V2 710 aa18.59■□□□□ 0.57
BRCA1-218ENST00000489037 SETDB2Q96T68 719 aa18.59■□□□□ 0.57
BRCA1-218ENST00000489037 BCORQ6W2J9 1755 aa18.58■□□□□ 0.57
BRCA1-218ENST00000489037 MYL6BP14649 208 aa18.58■□□□□ 0.56
BRCA1-218ENST00000489037 TBC1D9BQ66K14 1250 aa18.58■□□□□ 0.56
BRCA1-218ENST00000489037 A0A0G2JLW4 131 aa18.57■□□□□ 0.56
BRCA1-218ENST00000489037 RGL2O15211 777 aa18.57■□□□□ 0.56
BRCA1-218ENST00000489037 KIF6Q6ZMV9 814 aa18.57■□□□□ 0.56
BRCA1-218ENST00000489037 IFT57Q9NWB7 429 aa18.57■□□□□ 0.56
BRCA1-218ENST00000489037 CARMIL3Q8ND23 1372 aa18.56■□□□□ 0.56
BRCA1-218ENST00000489037 DPEP1P16444 411 aa18.56■□□□□ 0.56
BRCA1-218ENST00000489037 YBX3P16989 372 aaKnown RBP eCLIP18.56■□□□□ 0.56
BRCA1-218ENST00000489037 FAM9BQ8IZU0 186 aa18.56■□□□□ 0.56
BRCA1-218ENST00000489037 WWC3Q9ULE0 1092 aa18.56■□□□□ 0.56
BRCA1-218ENST00000489037 PXDNLA1KZ92 1463 aa18.56■□□□□ 0.56
BRCA1-218ENST00000489037 NRXN2Q9P2S2 1712 aa18.54■□□□□ 0.56
BRCA1-218ENST00000489037 HOXB7P09629 217 aa18.54■□□□□ 0.56
BRCA1-218ENST00000489037 CCDC27Q2M243 656 aa18.54■□□□□ 0.56
BRCA1-218ENST00000489037 MBIPQ9NS73 344 aa18.54■□□□□ 0.56
BRCA1-218ENST00000489037 PIM2Q9P1W9 311 aa18.54■□□□□ 0.56
BRCA1-218ENST00000489037 BCS1LQ9Y276 419 aa18.54■□□□□ 0.56
BRCA1-218ENST00000489037 NUP98P52948 1817 aa18.53■□□□□ 0.56
BRCA1-218ENST00000489037 ERVV-1B6SEH8 477 aa18.53■□□□□ 0.56
BRCA1-218ENST00000489037 ZNF853P0CG23 659 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms