RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 PNMA6EA0A0J9YXQ4 647 aa14.76□□□□□ -0.05
SHROOM3-208ENST00000486758 PPFIA3O75145 1194 aa14.76□□□□□ -0.05
SHROOM3-208ENST00000486758 CEBPZQ03701 1054 aaKnown RBP14.76□□□□□ -0.05
SHROOM3-208ENST00000486758 CCDC94Q9BW85 323 aaPredicted RBP14.76□□□□□ -0.05
SHROOM3-208ENST00000486758 TULP4Q9NRJ4 1543 aa14.75□□□□□ -0.05
SHROOM3-208ENST00000486758 U2AF2P26368 475 aaKnown RBP eCLIP14.75□□□□□ -0.05
SHROOM3-208ENST00000486758 RIC3Q7Z5B4 369 aa14.75□□□□□ -0.05
SHROOM3-208ENST00000486758 CKAP2LQ8IYA6 745 aa14.75□□□□□ -0.05
SHROOM3-208ENST00000486758 BTBD11A6QL63 1104 aa14.75□□□□□ -0.05
SHROOM3-208ENST00000486758 ZRSR1Q15695 479 aaKnown RBP14.75□□□□□ -0.05
SHROOM3-208ENST00000486758 PPP1R42Q7Z4L9 355 aa14.75□□□□□ -0.05
SHROOM3-208ENST00000486758 BICD2Q8TD16 824 aa14.75□□□□□ -0.05
SHROOM3-208ENST00000486758 QRICH2Q9H0J4 1663 aa14.75□□□□□ -0.05
SHROOM3-208ENST00000486758 STK3Q13188 491 aa14.75□□□□□ -0.05
SHROOM3-208ENST00000486758 WDR33Q9C0J8 1336 aaKnown RBP14.75□□□□□ -0.05
SHROOM3-208ENST00000486758 ZNF500O60304 480 aaPredicted RBP14.74□□□□□ -0.05
SHROOM3-208ENST00000486758 CPA1P15085 419 aa14.74□□□□□ -0.05
SHROOM3-208ENST00000486758 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.74□□□□□ -0.05
SHROOM3-208ENST00000486758 V9GYY5 206 aaPredicted RBP14.74□□□□□ -0.05
SHROOM3-208ENST00000486758 TPD52L1Q16890 204 aaPredicted RBP14.74□□□□□ -0.05
SHROOM3-208ENST00000486758 TCEANC2Q96MN5 208 aa14.74□□□□□ -0.05
SHROOM3-208ENST00000486758 CCDC83Q8IWF9 413 aa14.74□□□□□ -0.05
SHROOM3-208ENST00000486758 CLASRPQ8N2M8 674 aaKnown RBP14.74□□□□□ -0.05
SHROOM3-208ENST00000486758 TNRQ92752 1358 aa14.74□□□□□ -0.05
SHROOM3-208ENST00000486758 KCNA6P17658 529 aa14.73□□□□□ -0.05
SHROOM3-208ENST00000486758 HS1BP3Q53T59 392 aa14.73□□□□□ -0.05
SHROOM3-208ENST00000486758 CHPF2Q9P2E5 772 aa14.73□□□□□ -0.05
SHROOM3-208ENST00000486758 MLH3Q9UHC1 1453 aa14.73□□□□□ -0.05
SHROOM3-208ENST00000486758 G3BP1Q13283 466 aaKnown RBP eCLIP14.73□□□□□ -0.05
SHROOM3-208ENST00000486758 CCDC8Q9H0W5 538 aaPredicted RBP14.73□□□□□ -0.05
SHROOM3-208ENST00000486758 CHL1O00533 1208 aa14.72□□□□□ -0.05
SHROOM3-208ENST00000486758 MCM5P33992 734 aa14.72□□□□□ -0.05
SHROOM3-208ENST00000486758 GPATCH3Q96I76 525 aa14.72□□□□□ -0.05
SHROOM3-208ENST00000486758 PA2G4Q9UQ80 394 aaKnown RBP14.72□□□□□ -0.05
SHROOM3-208ENST00000486758 KDM4AO75164 1064 aa14.72□□□□□ -0.05
SHROOM3-208ENST00000486758 PALD1Q9ULE6 856 aa14.72□□□□□ -0.05
SHROOM3-208ENST00000486758 ATP6V1DQ9Y5K8 247 aa14.72□□□□□ -0.05
SHROOM3-208ENST00000486758 CCDC85AQ96PX6 553 aaPredicted RBP14.71□□□□□ -0.05
SHROOM3-208ENST00000486758 SETD1BQ9UPS6 1966 aaKnown RBP14.71□□□□□ -0.05
SHROOM3-208ENST00000486758 AACSQ86V21 672 aa14.71□□□□□ -0.05
SHROOM3-208ENST00000486758 SMAP1Q8IYB5 467 aaPredicted RBP14.71□□□□□ -0.05
SHROOM3-208ENST00000486758 ZBTB9Q96C00 473 aa14.71□□□□□ -0.05
SHROOM3-208ENST00000486758 NEUROD6Q96NK8 337 aa14.71□□□□□ -0.05
SHROOM3-208ENST00000486758 LGR6Q9HBX8 967 aa14.71□□□□□ -0.05
SHROOM3-208ENST00000486758 ZFYVE9O95405 1425 aa14.71□□□□□ -0.05
SHROOM3-208ENST00000486758 KIDINS220Q9ULH0 1771 aa14.71□□□□□ -0.06
SHROOM3-208ENST00000486758 SLC39A6Q13433 755 aa14.71□□□□□ -0.06
SHROOM3-208ENST00000486758 CCDC183Q5T5S1 534 aa14.71□□□□□ -0.06
SHROOM3-208ENST00000486758 DNAJC2Q99543 621 aaKnown RBP14.71□□□□□ -0.06
SHROOM3-208ENST00000486758 FSD1Q9BTV5 496 aa14.71□□□□□ -0.06
SHROOM3-208ENST00000486758 ADGRB3O60242 1522 aa14.7□□□□□ -0.06
SHROOM3-208ENST00000486758 ABCC4O15439 1325 aa14.7□□□□□ -0.06
SHROOM3-208ENST00000486758 MCM2P49736 904 aa14.7□□□□□ -0.06
SHROOM3-208ENST00000486758 PTPRCP08575 1304 aa14.7□□□□□ -0.06
SHROOM3-208ENST00000486758 GOLGA6L19H0YKK7 550 aa14.7□□□□□ -0.06
SHROOM3-208ENST00000486758 CNTROBQ8N137 903 aa14.7□□□□□ -0.06
SHROOM3-208ENST00000486758 RAPGEF4Q8WZA2 1011 aa14.7□□□□□ -0.06
SHROOM3-208ENST00000486758 PHF8Q9UPP1 1060 aa14.7□□□□□ -0.06
SHROOM3-208ENST00000486758 EDC4Q6P2E9 1401 aaKnown RBP14.7□□□□□ -0.06
SHROOM3-208ENST00000486758 KCNQ3O43525 872 aa14.7□□□□□ -0.06
SHROOM3-208ENST00000486758 FILIP1Q7Z7B0 1213 aa14.7□□□□□ -0.06
SHROOM3-208ENST00000486758 BOLA2Q9H3K6 86 aa14.7□□□□□ -0.06
SHROOM3-208ENST00000486758 TFIP11Q9UBB9 837 aaKnown RBP14.7□□□□□ -0.06
SHROOM3-208ENST00000486758 ZDHHC9Q9Y397 364 aa14.7□□□□□ -0.06
SHROOM3-208ENST00000486758 ARHGEF40Q8TER5 1519 aa14.7□□□□□ -0.06
SHROOM3-208ENST00000486758 BECN2A8MW95 431 aa14.69□□□□□ -0.06
SHROOM3-208ENST00000486758 CASTP20810 708 aaKnown RBP14.69□□□□□ -0.06
SHROOM3-208ENST00000486758 GORABQ5T7V8 394 aa14.69□□□□□ -0.06
SHROOM3-208ENST00000486758 MYRIPQ8NFW9 859 aa14.69□□□□□ -0.06
SHROOM3-208ENST00000486758 BBXQ8WY36 941 aaPredicted RBP14.69□□□□□ -0.06
SHROOM3-208ENST00000486758 NEXNQ0ZGT2 675 aa14.69□□□□□ -0.06
SHROOM3-208ENST00000486758 CWF19L2Q2TBE0 894 aaKnown RBP14.69□□□□□ -0.06
SHROOM3-208ENST00000486758 FAM173BQ6P4H8 233 aa14.69□□□□□ -0.06
SHROOM3-208ENST00000486758 JAKMIP1Q96N16 626 aaKnown RBP14.69□□□□□ -0.06
SHROOM3-208ENST00000486758 RIOK3O14730 519 aaKnown RBP14.69□□□□□ -0.06
SHROOM3-208ENST00000486758 HSPA1LP34931 641 aa14.69□□□□□ -0.06
SHROOM3-208ENST00000486758 PRPF40BQ6NWY9 871 aaKnown RBP14.69□□□□□ -0.06
SHROOM3-208ENST00000486758 TTC5Q8N0Z6 440 aa14.69□□□□□ -0.06
SHROOM3-208ENST00000486758 BCL2L12Q9HB09 334 aa14.69□□□□□ -0.06
SHROOM3-208ENST00000486758 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.69□□□□□ -0.06
SHROOM3-208ENST00000486758 INO80Q9ULG1 1556 aaPredicted RBP14.69□□□□□ -0.06
SHROOM3-208ENST00000486758 ZKSCAN1P17029 563 aaPredicted RBP14.68□□□□□ -0.06
SHROOM3-208ENST00000486758 ROBO2Q9HCK4 1378 aa14.68□□□□□ -0.06
SHROOM3-208ENST00000486758 KAT6BQ8WYB5 2073 aa14.68□□□□□ -0.06
SHROOM3-208ENST00000486758 ATF3P18847 181 aa14.68□□□□□ -0.06
SHROOM3-208ENST00000486758 PTGS1P23219 599 aa14.68□□□□□ -0.06
SHROOM3-208ENST00000486758 DNM1Q05193 864 aaKnown RBP14.68□□□□□ -0.06
SHROOM3-208ENST00000486758 FAM184AQ8NB25 1140 aa14.68□□□□□ -0.06
SHROOM3-208ENST00000486758 TRMT1Q9NXH9 659 aaKnown RBP14.68□□□□□ -0.06
SHROOM3-208ENST00000486758 CCDC192P0DO97 292 aa14.68□□□□□ -0.06
SHROOM3-208ENST00000486758 CCDC112Q8NEF3 446 aa14.68□□□□□ -0.06
SHROOM3-208ENST00000486758 NBPF7P0C2Y1 421 aaPredicted RBP14.67□□□□□ -0.06
SHROOM3-208ENST00000486758 NECAB1Q8N987 351 aa14.67□□□□□ -0.06
SHROOM3-208ENST00000486758 PLEKHO1Q53GL0 409 aaPredicted RBP14.67□□□□□ -0.06
SHROOM3-208ENST00000486758 DNAAF4Q8WXU2 420 aa14.67□□□□□ -0.06
SHROOM3-208ENST00000486758 PRIMPOLQ96LW4 560 aa14.67□□□□□ -0.06
SHROOM3-208ENST00000486758 FMNL2Q96PY5 1086 aa14.67□□□□□ -0.06
SHROOM3-208ENST00000486758 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.67□□□□□ -0.06
SHROOM3-208ENST00000486758 VGLL3A8MV65 326 aa14.67□□□□□ -0.06
SHROOM3-208ENST00000486758 UNC5CLQ8IV45 518 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms