RNA–Protein interactions for RNA: ENST00000485870.1

COL1A1-206, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 3

Gene COL1A1, Length 403 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-206ENST00000485870 CCDC146Q8IYE0 955 aa24.33■■□□□ 1.49
COL1A1-206ENST00000485870 THUMPD2Q9BTF0 503 aaKnown RBP24.33■■□□□ 1.49
COL1A1-206ENST00000485870 USP42Q9H9J4 1324 aaKnown RBP24.33■■□□□ 1.48
COL1A1-206ENST00000485870 TAF7Q15545 349 aaPredicted RBP24.32■■□□□ 1.48
COL1A1-206ENST00000485870 TEX13AQ9BXU3 409 aaPredicted RBP24.32■■□□□ 1.48
COL1A1-206ENST00000485870 COL15A1P39059 1388 aa24.31■■□□□ 1.48
COL1A1-206ENST00000485870 MIS18AQ9NYP9 233 aa24.31■■□□□ 1.48
COL1A1-206ENST00000485870 UTRNP46939 3433 aa24.3■■□□□ 1.48
COL1A1-206ENST00000485870 PELP1Q8IZL8 1130 aaKnown RBP24.3■■□□□ 1.48
COL1A1-206ENST00000485870 CD2APQ9Y5K6 639 aa24.3■■□□□ 1.48
COL1A1-206ENST00000485870 ZPR1O75312 459 aa24.29■■□□□ 1.48
COL1A1-206ENST00000485870 RIPK4P57078 832 aa24.29■■□□□ 1.48
COL1A1-206ENST00000485870 ADAMTS8Q9UP79 889 aa24.29■■□□□ 1.48
COL1A1-206ENST00000485870 TMPOP42166 694 aaKnown RBP24.28■■□□□ 1.48
COL1A1-206ENST00000485870 FKBP8Q14318 412 aa24.28■■□□□ 1.48
COL1A1-206ENST00000485870 GPR162Q16538 588 aa24.28■■□□□ 1.48
COL1A1-206ENST00000485870 USPL1Q5W0Q7 1092 aa24.28■■□□□ 1.48
COL1A1-206ENST00000485870 RRP7AQ9Y3A4 280 aaKnown RBP24.28■■□□□ 1.48
COL1A1-206ENST00000485870 PRAMEF22A3QJZ6 481 aa24.27■■□□□ 1.48
COL1A1-206ENST00000485870 ZNF330Q9Y3S2 320 aaPredicted RBP24.27■■□□□ 1.48
COL1A1-206ENST00000485870 GOLGB1Q14789 3259 aaKnown RBP24.27■■□□□ 1.48
COL1A1-206ENST00000485870 A1BGP04217 495 aa24.26■■□□□ 1.47
COL1A1-206ENST00000485870 SNRPA1P09661 255 aaKnown RBP24.26■■□□□ 1.47
COL1A1-206ENST00000485870 PNISRQ8TF01 805 aaKnown RBP24.26■■□□□ 1.47
COL1A1-206ENST00000485870 RUNDC1Q96C34 613 aa24.26■■□□□ 1.47
COL1A1-206ENST00000485870 USP16Q9Y5T5 823 aa24.26■■□□□ 1.47
COL1A1-206ENST00000485870 PARP3Q9Y6F1 533 aa24.26■■□□□ 1.47
COL1A1-206ENST00000485870 KDM3BQ7LBC6 1761 aa24.26■■□□□ 1.47
COL1A1-206ENST00000485870 EIF5P55010 431 aaKnown RBP24.25■■□□□ 1.47
COL1A1-206ENST00000485870 NEUROD2Q15784 382 aa24.25■■□□□ 1.47
COL1A1-206ENST00000485870 NARFQ9UHQ1 456 aa24.25■■□□□ 1.47
COL1A1-206ENST00000485870 LMOD3Q0VAK6 560 aa24.23■■□□□ 1.47
COL1A1-206ENST00000485870 A0A087WZG4 1122 aa24.22■■□□□ 1.47
COL1A1-206ENST00000485870 PIP4K2AP48426 406 aaPredicted RBP24.22■■□□□ 1.47
COL1A1-206ENST00000485870 DDR1Q08345 913 aa24.22■■□□□ 1.47
COL1A1-206ENST00000485870 IL6STP40189 918 aaPredicted RBP24.21■■□□□ 1.47
COL1A1-206ENST00000485870 C10orf71Q711Q0 1435 aa24.2■■□□□ 1.46
COL1A1-206ENST00000485870 KIF13BQ9NQT8 1826 aa24.2■■□□□ 1.46
COL1A1-206ENST00000485870 ANP32CO43423 234 aa24.2■■□□□ 1.46
COL1A1-206ENST00000485870 YY1P25490 414 aa24.2■■□□□ 1.46
COL1A1-206ENST00000485870 CCDC184Q52MB2 194 aa24.2■■□□□ 1.46
COL1A1-206ENST00000485870 NPM2Q86SE8 214 aaKnown RBP24.2■■□□□ 1.46
COL1A1-206ENST00000485870 BCL2L12Q9HB09 334 aa24.2■■□□□ 1.46
COL1A1-206ENST00000485870 WWC3Q9ULE0 1092 aa24.2■■□□□ 1.46
COL1A1-206ENST00000485870 YBX3P16989 372 aaKnown RBP eCLIP24.19■■□□□ 1.46
COL1A1-206ENST00000485870 TSPYL4Q9UJ04 414 aa24.19■■□□□ 1.46
COL1A1-206ENST00000485870 TBC1D2BQ9UPU7 963 aa24.19■■□□□ 1.46
COL1A1-206ENST00000485870 POLRMTO00411 1230 aaKnown RBP24.18■■□□□ 1.46
COL1A1-206ENST00000485870 TM4SF1P30408 202 aa24.18■■□□□ 1.46
COL1A1-206ENST00000485870 EIF4A1P60842 406 aaKnown RBP24.18■■□□□ 1.46
COL1A1-206ENST00000485870 LAMB4A4D0S4 1761 aa24.18■■□□□ 1.46
COL1A1-206ENST00000485870 NFIXQ14938 502 aa24.17■■□□□ 1.46
COL1A1-206ENST00000485870 SCN7AQ01118 1682 aa24.17■■□□□ 1.46
COL1A1-206ENST00000485870 PXDNLA1KZ92 1463 aa24.16■■□□□ 1.46
COL1A1-206ENST00000485870 TRIM35Q9UPQ4 493 aa24.16■■□□□ 1.46
COL1A1-206ENST00000485870 N4BP2Q86UW6 1770 aaPredicted RBP24.16■■□□□ 1.46
COL1A1-206ENST00000485870 GIGYF1O75420 1035 aaPredicted RBP24.15■■□□□ 1.46
COL1A1-206ENST00000485870 BICDL1Q6ZP65 573 aa24.15■■□□□ 1.46
COL1A1-206ENST00000485870 CHD4Q14839 1912 aa24.15■■□□□ 1.46
COL1A1-206ENST00000485870 KIAA1551Q9HCM1 1747 aa24.15■■□□□ 1.46
COL1A1-206ENST00000485870 NBPF26B4DH59 902 aa24.14■■□□□ 1.45
COL1A1-206ENST00000485870 NBPF10Q6P3W6 841 aaKnown RBP24.14■■□□□ 1.45
COL1A1-206ENST00000485870 DZIP3Q86Y13 1208 aaKnown RBP24.14■■□□□ 1.45
COL1A1-206ENST00000485870 NBPF15Q8N660 670 aa24.14■■□□□ 1.45
COL1A1-206ENST00000485870 AFDNP55196 1824 aaKnown RBP24.13■■□□□ 1.45
COL1A1-206ENST00000485870 A0A0G2JLW4 131 aa24.13■■□□□ 1.45
COL1A1-206ENST00000485870 APAF1O14727 1248 aa24.13■■□□□ 1.45
COL1A1-206ENST00000485870 GRIN3BO60391 1043 aa24.13■■□□□ 1.45
COL1A1-206ENST00000485870 TGFB2P61812 414 aa24.13■■□□□ 1.45
COL1A1-206ENST00000485870 LAS1LQ9Y4W2 734 aaKnown RBP24.13■■□□□ 1.45
COL1A1-206ENST00000485870 CAMTA2O94983 1202 aa24.12■■□□□ 1.45
COL1A1-206ENST00000485870 TBC1D9BQ66K14 1250 aa24.12■■□□□ 1.45
COL1A1-206ENST00000485870 BABAM1Q9NWV8 329 aa24.12■■□□□ 1.45
COL1A1-206ENST00000485870 BCORQ6W2J9 1755 aa24.11■■□□□ 1.45
COL1A1-206ENST00000485870 DPEP1P16444 411 aa24.11■■□□□ 1.45
COL1A1-206ENST00000485870 MRS2Q9HD23 443 aa24.11■■□□□ 1.45
COL1A1-206ENST00000485870 SERPINB2P05120 415 aa24.1■■□□□ 1.45
COL1A1-206ENST00000485870 NRXN2Q9P2S2 1712 aa24.09■■□□□ 1.45
COL1A1-206ENST00000485870 NGEFQ8N5V2 710 aa24.08■■□□□ 1.45
COL1A1-206ENST00000485870 CHL1O00533 1208 aa24.07■■□□□ 1.44
COL1A1-206ENST00000485870 MYL6BP14649 208 aa24.06■■□□□ 1.44
COL1A1-206ENST00000485870 BCS1LQ9Y276 419 aa24.06■■□□□ 1.44
COL1A1-206ENST00000485870 CARMIL3Q8ND23 1372 aa24.05■■□□□ 1.44
COL1A1-206ENST00000485870 EIF2S2P20042 333 aaKnown RBP24.05■■□□□ 1.44
COL1A1-206ENST00000485870 CHRNA5P30532 468 aa24.05■■□□□ 1.44
COL1A1-206ENST00000485870 SETDB2Q96T68 719 aa24.05■■□□□ 1.44
COL1A1-206ENST00000485870 BRCA1P38398 1863 aaKnown RBP24.04■■□□□ 1.44
COL1A1-206ENST00000485870 SENP3-EIF4A1A0A087X0R7 540 aa24.04■■□□□ 1.44
COL1A1-206ENST00000485870 KCNA3P22001 575 aa24.04■■□□□ 1.44
COL1A1-206ENST00000485870 KRT24Q2M2I5 525 aa24.04■■□□□ 1.44
COL1A1-206ENST00000485870 ZNF652Q9Y2D9 606 aa24.04■■□□□ 1.44
COL1A1-206ENST00000485870 CLEC4GQ6UXB4 293 aa24.02■■□□□ 1.44
COL1A1-206ENST00000485870 CFAP44Q96MT7 982 aa24.02■■□□□ 1.44
COL1A1-206ENST00000485870 PIM2Q9P1W9 311 aa24.02■■□□□ 1.44
COL1A1-206ENST00000485870 ERBB4Q15303 1308 aa24.02■■□□□ 1.44
COL1A1-206ENST00000485870 NPHP1O15259 732 aa24.01■■□□□ 1.43
COL1A1-206ENST00000485870 PRR5LQ6MZQ0 368 aa24.01■■□□□ 1.43
COL1A1-206ENST00000485870 CCDC24Q8N4L8 307 aa24.01■■□□□ 1.43
COL1A1-206ENST00000485870 NECTIN2Q92692 538 aa24.01■■□□□ 1.43
COL1A1-206ENST00000485870 HLFQ16534 295 aa24■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms