RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 NEXMIFQ5QGS0 1516 aa8.23□□□□□ -1.09
PTPN4-210ENST00000485247 NUP155O75694 1391 aa8.22□□□□□ -1.09
PTPN4-210ENST00000485247 ADGRB2O60241 1585 aa8.22□□□□□ -1.09
PTPN4-210ENST00000485247 CCDC144AA2RUR9 1427 aa8.22□□□□□ -1.09
PTPN4-210ENST00000485247 MS4A1P11836 297 aa8.22□□□□□ -1.09
PTPN4-210ENST00000485247 SPRYD7Q5W111 196 aa8.22□□□□□ -1.09
PTPN4-210ENST00000485247 SPIRE2Q8WWL2 714 aa8.22□□□□□ -1.09
PTPN4-210ENST00000485247 CDC42BPGQ6DT37 1551 aa8.22□□□□□ -1.09
PTPN4-210ENST00000485247 NAIPQ13075 1403 aa8.21□□□□□ -1.09
PTPN4-210ENST00000485247 TNS3Q68CZ2 1445 aa8.21□□□□□ -1.09
PTPN4-210ENST00000485247 GFRA3O60609 400 aa8.21□□□□□ -1.1
PTPN4-210ENST00000485247 PSME1Q06323 249 aa8.21□□□□□ -1.1
PTPN4-210ENST00000485247 Q3C1V9 767 aa8.21□□□□□ -1.1
PTPN4-210ENST00000485247 TRIM67Q6ZTA4 783 aa8.21□□□□□ -1.1
PTPN4-210ENST00000485247 WAPLQ7Z5K2 1190 aa8.21□□□□□ -1.1
PTPN4-210ENST00000485247 NUTM1Q86Y26 1132 aa8.21□□□□□ -1.1
PTPN4-210ENST00000485247 FCF1Q9Y324 198 aaKnown RBP8.21□□□□□ -1.1
PTPN4-210ENST00000485247 SPATA31A5Q5VU36 1347 aa8.21□□□□□ -1.1
PTPN4-210ENST00000485247 SPATA31A7Q8IWB4 1347 aa8.21□□□□□ -1.1
PTPN4-210ENST00000485247 GIGYF1O75420 1035 aaPredicted RBP8.2□□□□□ -1.1
PTPN4-210ENST00000485247 SYMPKQ92797 1274 aaKnown RBP8.2□□□□□ -1.1
PTPN4-210ENST00000485247 PCDHGC3Q9UN70 934 aa8.2□□□□□ -1.1
PTPN4-210ENST00000485247 NUP188Q5SRE5 1749 aa8.2□□□□□ -1.1
PTPN4-210ENST00000485247 PRAG1Q86YV5 1406 aa8.2□□□□□ -1.1
PTPN4-210ENST00000485247 LCE2BO14633 110 aa8.19□□□□□ -1.1
PTPN4-210ENST00000485247 PDE4DQ08499 809 aa8.19□□□□□ -1.1
PTPN4-210ENST00000485247 USB1Q9BQ65 265 aaKnown RBP8.19□□□□□ -1.1
PTPN4-210ENST00000485247 BEGAINQ9BUH8 593 aa8.19□□□□□ -1.1
PTPN4-210ENST00000485247 STK26Q9P289 416 aa8.19□□□□□ -1.1
PTPN4-210ENST00000485247 NRAPQ86VF7 1730 aa8.19□□□□□ -1.1
PTPN4-210ENST00000485247 RREB1Q92766 1687 aa8.18□□□□□ -1.1
PTPN4-210ENST00000485247 ZBTB7AO95365 584 aa8.18□□□□□ -1.1
PTPN4-210ENST00000485247 NDUFV2P19404 249 aa8.18□□□□□ -1.1
PTPN4-210ENST00000485247 MMP16P51512 607 aa8.18□□□□□ -1.1
PTPN4-210ENST00000485247 ZNF598Q86UK7 904 aaKnown RBP8.18□□□□□ -1.1
PTPN4-210ENST00000485247 PDGFDQ9GZP0 370 aaPredicted RBP8.18□□□□□ -1.1
PTPN4-210ENST00000485247 ARHGEF10O15013 1369 aa8.18□□□□□ -1.1
PTPN4-210ENST00000485247 THSD7AQ9UPZ6 1657 aa8.18□□□□□ -1.1
PTPN4-210ENST00000485247 MOXD2PA6NHM9 499 aa8.17□□□□□ -1.1
PTPN4-210ENST00000485247 NRG2O14511 850 aaPredicted RBP8.17□□□□□ -1.1
PTPN4-210ENST00000485247 FDX1P10109 184 aa8.17□□□□□ -1.1
PTPN4-210ENST00000485247 Q6ZNB5 142 aa8.17□□□□□ -1.1
PTPN4-210ENST00000485247 SYT17Q9BSW7 474 aa8.17□□□□□ -1.1
PTPN4-210ENST00000485247 FHDC1Q9C0D6 1143 aaPredicted RBP8.17□□□□□ -1.1
PTPN4-210ENST00000485247 USP35Q9P2H5 1018 aa8.17□□□□□ -1.1
PTPN4-210ENST00000485247 PDZRN3Q9UPQ7 1066 aa8.17□□□□□ -1.1
PTPN4-210ENST00000485247 SBNO1A3KN83 1393 aa8.17□□□□□ -1.1
PTPN4-210ENST00000485247 PLEKHH1Q9ULM0 1364 aa8.17□□□□□ -1.1
PTPN4-210ENST00000485247 NRKQ7Z2Y5 1582 aa8.17□□□□□ -1.1
PTPN4-210ENST00000485247 KIF1AQ12756 1690 aa8.17□□□□□ -1.1
PTPN4-210ENST00000485247 ABCA3Q99758 1704 aa8.17□□□□□ -1.1
PTPN4-210ENST00000485247 DXOO77932 396 aaKnown RBP8.16□□□□□ -1.1
PTPN4-210ENST00000485247 CLTCL1P53675 1640 aa8.16□□□□□ -1.1
PTPN4-210ENST00000485247 PDE3BQ13370 1112 aa8.16□□□□□ -1.1
PTPN4-210ENST00000485247 LAPTM4AQ15012 233 aa8.16□□□□□ -1.1
PTPN4-210ENST00000485247 ZNF697Q5TEC3 545 aa8.16□□□□□ -1.1
PTPN4-210ENST00000485247 SPATA31A1Q5TZJ5 1347 aa8.16□□□□□ -1.1
PTPN4-210ENST00000485247 STRN4Q9NRL3 753 aa8.16□□□□□ -1.1
PTPN4-210ENST00000485247 CHD4Q14839 1912 aa8.15□□□□□ -1.1
PTPN4-210ENST00000485247 TBC1D2Q9BYX2 928 aa8.15□□□□□ -1.1
PTPN4-210ENST00000485247 COL14A1Q05707 1796 aaKnown RBP8.15□□□□□ -1.11
PTPN4-210ENST00000485247 MYOM1P52179 1685 aa8.14□□□□□ -1.11
PTPN4-210ENST00000485247 GDF9O60383 454 aa8.14□□□□□ -1.11
PTPN4-210ENST00000485247 PMFBP1Q8TBY8 1022 aa8.14□□□□□ -1.11
PTPN4-210ENST00000485247 PRDM11Q9NQV5 511 aa8.14□□□□□ -1.11
PTPN4-210ENST00000485247 FMN2Q9NZ56 1722 aa8.14□□□□□ -1.11
PTPN4-210ENST00000485247 UTRNP46939 3433 aa8.14□□□□□ -1.11
PTPN4-210ENST00000485247 RRBP1Q9P2E9 1410 aaKnown RBP8.13□□□□□ -1.11
PTPN4-210ENST00000485247 RPIAP49247 311 aa8.13□□□□□ -1.11
PTPN4-210ENST00000485247 CHRNA2Q15822 529 aa8.13□□□□□ -1.11
PTPN4-210ENST00000485247 TMEM132EQ6IEE7 984 aa8.13□□□□□ -1.11
PTPN4-210ENST00000485247 RETREG3Q86VR2 466 aa8.13□□□□□ -1.11
PTPN4-210ENST00000485247 NRXN1Q9ULB1 1477 aa8.13□□□□□ -1.11
PTPN4-210ENST00000485247 KIF1BO60333 1816 aa8.13□□□□□ -1.11
PTPN4-210ENST00000485247 RGPD8O14715 1765 aaPredicted RBP8.12□□□□□ -1.11
PTPN4-210ENST00000485247 RPGRIP1LQ68CZ1 1315 aa8.12□□□□□ -1.11
PTPN4-210ENST00000485247 C6orf229H3BNL8 230 aa8.12□□□□□ -1.11
PTPN4-210ENST00000485247 TNFRSF10AO00220 468 aa8.12□□□□□ -1.11
PTPN4-210ENST00000485247 JUNDP17535 347 aa8.12□□□□□ -1.11
PTPN4-210ENST00000485247 PRR20EP86478 221 aa8.12□□□□□ -1.11
PTPN4-210ENST00000485247 PRR20CP86479 221 aa8.12□□□□□ -1.11
PTPN4-210ENST00000485247 PRR20DP86480 221 aa8.12□□□□□ -1.11
PTPN4-210ENST00000485247 PRR20BP86481 221 aa8.12□□□□□ -1.11
PTPN4-210ENST00000485247 PRR20AP86496 221 aa8.12□□□□□ -1.11
PTPN4-210ENST00000485247 GPR162Q16538 588 aa8.12□□□□□ -1.11
PTPN4-210ENST00000485247 RSBN1LQ6PCB5 846 aaPredicted RBP8.12□□□□□ -1.11
PTPN4-210ENST00000485247 PKD2L1Q9P0L9 805 aa8.12□□□□□ -1.11
PTPN4-210ENST00000485247 CEP350Q5VT06 3117 aa8.12□□□□□ -1.11
PTPN4-210ENST00000485247 CASZ1Q86V15 1759 aa8.12□□□□□ -1.11
PTPN4-210ENST00000485247 TECPR2O15040 1411 aa8.12□□□□□ -1.11
PTPN4-210ENST00000485247 ROCK1Q13464 1354 aa8.11□□□□□ -1.11
PTPN4-210ENST00000485247 ITGAEP38570 1179 aa8.11□□□□□ -1.11
PTPN4-210ENST00000485247 ABCC11Q96J66 1382 aa8.1□□□□□ -1.11
PTPN4-210ENST00000485247 ADGRF5Q8IZF2 1346 aa8.1□□□□□ -1.11
PTPN4-210ENST00000485247 LOC105371045A0A1W2PR82 267 aa8.1□□□□□ -1.11
PTPN4-210ENST00000485247 PLSCR1O15162 318 aa8.1□□□□□ -1.11
PTPN4-210ENST00000485247 EVA1CP58658 441 aa8.1□□□□□ -1.11
PTPN4-210ENST00000485247 PCDHB15Q9Y5E8 787 aa8.1□□□□□ -1.11
PTPN4-210ENST00000485247 KIAA0232Q92628 1395 aa8.1□□□□□ -1.11
PTPN4-210ENST00000485247 DLC1Q96QB1 1528 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms