RNA–Protein interactions for RNA: ENST00000483414.1

LIMK1-205, Transcript of LIM domain kinase 1, humanhuman

TSL 1 (best)

Gene LIMK1, Length 3,374 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-205ENST00000483414 ACSBG1Q96GR2 724 aa12.42□□□□□ -0.42
LIMK1-205ENST00000483414 TMOD3Q9NYL9 352 aa12.42□□□□□ -0.42
LIMK1-205ENST00000483414 NOP58Q9Y2X3 529 aaKnown RBP12.42□□□□□ -0.42
LIMK1-205ENST00000483414 HOXB7P09629 217 aa12.41□□□□□ -0.42
LIMK1-205ENST00000483414 PDIA6Q15084 440 aa12.41□□□□□ -0.42
LIMK1-205ENST00000483414 PALLDQ8WX93 1383 aa12.41□□□□□ -0.42
LIMK1-205ENST00000483414 PLIN1O60240 522 aa12.41□□□□□ -0.42
LIMK1-205ENST00000483414 CT47B1P0C2W7 299 aaPredicted RBP12.41□□□□□ -0.42
LIMK1-205ENST00000483414 TEFQ10587 303 aa12.41□□□□□ -0.42
LIMK1-205ENST00000483414 KAT6BQ8WYB5 2073 aa12.41□□□□□ -0.42
LIMK1-205ENST00000483414 VSIG10Q8N0Z9 540 aa12.41□□□□□ -0.42
LIMK1-205ENST00000483414 EXOC6Q8TAG9 804 aa12.4□□□□□ -0.42
LIMK1-205ENST00000483414 LAS1LQ9Y4W2 734 aaKnown RBP12.4□□□□□ -0.42
LIMK1-205ENST00000483414 NUP98P52948 1817 aa12.4□□□□□ -0.42
LIMK1-205ENST00000483414 PROM2Q8N271 834 aa12.39□□□□□ -0.43
LIMK1-205ENST00000483414 ZBTB47Q9UFB7 747 aaPredicted RBP12.39□□□□□ -0.43
LIMK1-205ENST00000483414 RCAN3Q9UKA8 241 aa12.39□□□□□ -0.43
LIMK1-205ENST00000483414 RARSP54136 660 aaKnown RBP12.39□□□□□ -0.43
LIMK1-205ENST00000483414 ITPK1Q13572 414 aa12.38□□□□□ -0.43
LIMK1-205ENST00000483414 AFDNP55196 1824 aaKnown RBP12.37□□□□□ -0.43
LIMK1-205ENST00000483414 TWISTNBQ3B726 338 aaPredicted RBP12.37□□□□□ -0.43
LIMK1-205ENST00000483414 ZNF428Q96B54 188 aa12.36□□□□□ -0.43
LIMK1-205ENST00000483414 LRRC4BQ9NT99 713 aa12.36□□□□□ -0.43
LIMK1-205ENST00000483414 PLSCR1O15162 318 aa12.36□□□□□ -0.43
LIMK1-205ENST00000483414 ALDH1L2Q3SY69 923 aa12.36□□□□□ -0.43
LIMK1-205ENST00000483414 RTL5Q5HYW3 569 aaPredicted RBP12.36□□□□□ -0.43
LIMK1-205ENST00000483414 FMNL2Q96PY5 1086 aa12.36□□□□□ -0.43
LIMK1-205ENST00000483414 LAMB2P55268 1798 aa12.36□□□□□ -0.43
LIMK1-205ENST00000483414 TRIM37O94972 964 aa12.36□□□□□ -0.43
LIMK1-205ENST00000483414 MRPL50Q8N5N7 158 aaKnown RBP12.36□□□□□ -0.43
LIMK1-205ENST00000483414 USP16Q9Y5T5 823 aa12.36□□□□□ -0.43
LIMK1-205ENST00000483414 PXDNLA1KZ92 1463 aa12.35□□□□□ -0.43
LIMK1-205ENST00000483414 NBPF26B4DH59 902 aa12.35□□□□□ -0.43
LIMK1-205ENST00000483414 CYP19A1P11511 503 aaPredicted RBP12.35□□□□□ -0.43
LIMK1-205ENST00000483414 NBPF14Q5TI25 921 aa12.35□□□□□ -0.43
LIMK1-205ENST00000483414 NBPF10Q6P3W6 841 aaKnown RBP12.35□□□□□ -0.43
LIMK1-205ENST00000483414 NBPF15Q8N660 670 aa12.35□□□□□ -0.43
LIMK1-205ENST00000483414 SSH1Q8WYL5 1049 aa12.35□□□□□ -0.43
LIMK1-205ENST00000483414 LOC102724428A0A0B4J2F2 783 aa12.35□□□□□ -0.43
LIMK1-205ENST00000483414 SIK1P57059 783 aa12.35□□□□□ -0.43
LIMK1-205ENST00000483414 NRXN2Q9P2S2 1712 aa12.35□□□□□ -0.43
LIMK1-205ENST00000483414 INTS5Q6P9B9 1019 aaKnown RBP12.35□□□□□ -0.43
LIMK1-205ENST00000483414 LINC00116Q8NCU8 138 aa12.35□□□□□ -0.43
LIMK1-205ENST00000483414 A0A0G2JS52 829 aa12.34□□□□□ -0.43
LIMK1-205ENST00000483414 SNRPA1P09661 255 aaKnown RBP12.34□□□□□ -0.43
LIMK1-205ENST00000483414 PROSER3Q2NL68 480 aa12.34□□□□□ -0.43
LIMK1-205ENST00000483414 AMIGO3Q86WK7 504 aa12.34□□□□□ -0.43
LIMK1-205ENST00000483414 BCAR3O75815 825 aa12.34□□□□□ -0.43
LIMK1-205ENST00000483414 CAMKK2Q96RR4 588 aa12.34□□□□□ -0.43
LIMK1-205ENST00000483414 IBTKQ9P2D0 1353 aaPredicted RBP12.34□□□□□ -0.43
LIMK1-205ENST00000483414 RRP1P56182 461 aaKnown RBP12.33□□□□□ -0.43
LIMK1-205ENST00000483414 CNTNAP4Q9C0A0 1308 aa12.33□□□□□ -0.44
LIMK1-205ENST00000483414 ERBB4Q15303 1308 aa12.33□□□□□ -0.44
LIMK1-205ENST00000483414 EIF5BO60841 1220 aaKnown RBP12.33□□□□□ -0.44
LIMK1-205ENST00000483414 SMARCC1Q92922 1105 aaPredicted RBP12.33□□□□□ -0.44
LIMK1-205ENST00000483414 SKAP1Q86WV1 359 aa12.32□□□□□ -0.44
LIMK1-205ENST00000483414 DNAJC10Q8IXB1 793 aa12.32□□□□□ -0.44
LIMK1-205ENST00000483414 SYTL4Q96C24 671 aaPredicted RBP12.32□□□□□ -0.44
LIMK1-205ENST00000483414 DDX60Q8IY21 1712 aaKnown RBP12.32□□□□□ -0.44
LIMK1-205ENST00000483414 ADCY9O60503 1353 aa12.32□□□□□ -0.44
LIMK1-205ENST00000483414 ILDR2Q71H61 639 aa12.32□□□□□ -0.44
LIMK1-205ENST00000483414 TTC5Q8N0Z6 440 aa12.32□□□□□ -0.44
LIMK1-205ENST00000483414 ELL2O00472 640 aaPredicted RBP12.31□□□□□ -0.44
LIMK1-205ENST00000483414 PTCD1O75127 700 aaKnown RBP12.31□□□□□ -0.44
LIMK1-205ENST00000483414 CHPF2Q9P2E5 772 aa12.31□□□□□ -0.44
LIMK1-205ENST00000483414 G2E3Q7L622 706 aa12.31□□□□□ -0.44
LIMK1-205ENST00000483414 SLC27A3Q5K4L6 730 aa12.3□□□□□ -0.44
LIMK1-205ENST00000483414 ATP10DQ9P241 1426 aa12.3□□□□□ -0.44
LIMK1-205ENST00000483414 ABCC4O15439 1325 aa12.3□□□□□ -0.44
LIMK1-205ENST00000483414 AKT1S1Q96B36 256 aa12.3□□□□□ -0.44
LIMK1-205ENST00000483414 RC3H1Q5TC82 1133 aaKnown RBP12.29□□□□□ -0.44
LIMK1-205ENST00000483414 DDX21Q9NR30 783 aaKnown RBP eCLIP12.29□□□□□ -0.44
LIMK1-205ENST00000483414 KCNQ4P56696 695 aa12.29□□□□□ -0.44
LIMK1-205ENST00000483414 HDGFL1Q5TGJ6 251 aa12.29□□□□□ -0.44
LIMK1-205ENST00000483414 TNNQ9UQP3 1299 aa12.29□□□□□ -0.44
LIMK1-205ENST00000483414 DAXXQ9UER7 740 aaPredicted RBP12.29□□□□□ -0.44
LIMK1-205ENST00000483414 ATP6V1AP38606 617 aa12.28□□□□□ -0.44
LIMK1-205ENST00000483414 CRKLP46109 303 aaKnown RBP12.28□□□□□ -0.44
LIMK1-205ENST00000483414 CCDC30Q5VVM6 783 aa12.28□□□□□ -0.44
LIMK1-205ENST00000483414 ARHGAP45Q92619 1136 aa12.28□□□□□ -0.44
LIMK1-205ENST00000483414 IPO9Q96P70 1041 aaKnown RBP12.28□□□□□ -0.44
LIMK1-205ENST00000483414 TEX13AQ9BXU3 409 aaPredicted RBP12.28□□□□□ -0.44
LIMK1-205ENST00000483414 PHAXQ9H814 394 aaKnown RBP12.28□□□□□ -0.44
LIMK1-205ENST00000483414 A1BGP04217 495 aa12.28□□□□□ -0.44
LIMK1-205ENST00000483414 EIF5P55010 431 aaKnown RBP12.28□□□□□ -0.44
LIMK1-205ENST00000483414 TXNRD1Q16881 649 aa12.28□□□□□ -0.44
LIMK1-205ENST00000483414 ZBTB1Q9Y2K1 713 aa12.28□□□□□ -0.44
LIMK1-205ENST00000483414 UPF1Q92900 1129 aaKnown RBP eCLIP12.27□□□□□ -0.44
LIMK1-205ENST00000483414 DBF4Q9UBU7 674 aaPredicted RBP12.27□□□□□ -0.44
LIMK1-205ENST00000483414 KIF13BQ9NQT8 1826 aa12.27□□□□□ -0.44
LIMK1-205ENST00000483414 MYH3P11055 1940 aa12.27□□□□□ -0.45
LIMK1-205ENST00000483414 CRBNQ96SW2 442 aa12.27□□□□□ -0.45
LIMK1-205ENST00000483414 BCL2L13Q9BXK5 485 aa12.27□□□□□ -0.45
LIMK1-205ENST00000483414 KIAA1551Q9HCM1 1747 aa12.27□□□□□ -0.45
LIMK1-205ENST00000483414 RLBP1P12271 317 aa12.27□□□□□ -0.45
LIMK1-205ENST00000483414 TRIM27P14373 513 aa12.27□□□□□ -0.45
LIMK1-205ENST00000483414 PTPRCP08575 1304 aa12.27□□□□□ -0.45
LIMK1-205ENST00000483414 ANXA1P04083 346 aa12.26□□□□□ -0.45
LIMK1-205ENST00000483414 ZNF827Q17R98 1081 aa12.26□□□□□ -0.45
LIMK1-205ENST00000483414 C20orf194Q5TEA3 1177 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms