RNA–Protein interactions for RNA: ENST00000482310.5

HDAC1-208, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 779 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-208ENST00000482310 TSPYL6Q8N831 410 aa17.13■□□□□ 0.33
HDAC1-208ENST00000482310 SNRPA1P09661 255 aaKnown RBP17.12■□□□□ 0.33
HDAC1-208ENST00000482310 SLC27A3Q5K4L6 730 aa17.12■□□□□ 0.33
HDAC1-208ENST00000482310 DUSP27Q5VZP5 1158 aa17.12■□□□□ 0.33
HDAC1-208ENST00000482310 C4AP0C0L4 1744 aa17.12■□□□□ 0.33
HDAC1-208ENST00000482310 GIGYF1O75420 1035 aaPredicted RBP17.11■□□□□ 0.33
HDAC1-208ENST00000482310 USP16Q9Y5T5 823 aa17.11■□□□□ 0.33
HDAC1-208ENST00000482310 CACNA1FO60840 1977 aa17.11■□□□□ 0.33
HDAC1-208ENST00000482310 TCERG1O14776 1098 aaKnown RBP17.1■□□□□ 0.33
HDAC1-208ENST00000482310 TWISTNBQ3B726 338 aaPredicted RBP17.1■□□□□ 0.33
HDAC1-208ENST00000482310 SMIM5Q71RC9 77 aa17.1■□□□□ 0.33
HDAC1-208ENST00000482310 ZNF330Q9Y3S2 320 aaPredicted RBP17.1■□□□□ 0.33
HDAC1-208ENST00000482310 CRKLP46109 303 aaKnown RBP17.09■□□□□ 0.33
HDAC1-208ENST00000482310 ZNF827Q17R98 1081 aa17.09■□□□□ 0.33
HDAC1-208ENST00000482310 VSIG10Q8N0Z9 540 aa17.09■□□□□ 0.33
HDAC1-208ENST00000482310 AK7Q96M32 723 aa17.09■□□□□ 0.33
HDAC1-208ENST00000482310 ANO8Q9HCE9 1232 aaPredicted RBP17.09■□□□□ 0.33
HDAC1-208ENST00000482310 QSER1Q2KHR3 1735 aa17.08■□□□□ 0.32
HDAC1-208ENST00000482310 GNPATO15228 680 aa17.08■□□□□ 0.32
HDAC1-208ENST00000482310 A1BGP04217 495 aa17.08■□□□□ 0.32
HDAC1-208ENST00000482310 CYP19A1P11511 503 aaPredicted RBP17.08■□□□□ 0.32
HDAC1-208ENST00000482310 CANXP27824 592 aaKnown RBP17.08■□□□□ 0.32
HDAC1-208ENST00000482310 HDGFL1Q5TGJ6 251 aa17.08■□□□□ 0.32
HDAC1-208ENST00000482310 PHF14O94880 888 aa17.07■□□□□ 0.32
HDAC1-208ENST00000482310 STARD3NLO95772 234 aa17.07■□□□□ 0.32
HDAC1-208ENST00000482310 ANXA1P04083 346 aa17.07■□□□□ 0.32
HDAC1-208ENST00000482310 CCDC87Q9NVE4 849 aa17.07■□□□□ 0.32
HDAC1-208ENST00000482310 ZBTB1Q9Y2K1 713 aa17.07■□□□□ 0.32
HDAC1-208ENST00000482310 MYL6BP14649 208 aa17.06■□□□□ 0.32
HDAC1-208ENST00000482310 TRMT2AQ8IZ69 625 aaKnown RBP17.06■□□□□ 0.32
HDAC1-208ENST00000482310 TEX13AQ9BXU3 409 aaPredicted RBP17.06■□□□□ 0.32
HDAC1-208ENST00000482310 CNTNAP4Q9C0A0 1308 aa17.05■□□□□ 0.32
HDAC1-208ENST00000482310 ARXQ96QS3 562 aa17.05■□□□□ 0.32
HDAC1-208ENST00000482310 STK32BQ9NY57 414 aa17.05■□□□□ 0.32
HDAC1-208ENST00000482310 PROSER3Q2NL68 480 aa17.04■□□□□ 0.32
HDAC1-208ENST00000482310 INTS5Q6P9B9 1019 aaKnown RBP17.04■□□□□ 0.32
HDAC1-208ENST00000482310 AMIGO3Q86WK7 504 aa17.04■□□□□ 0.32
HDAC1-208ENST00000482310 TFCP2L1Q9NZI6 479 aa17.04■□□□□ 0.32
HDAC1-208ENST00000482310 CHPF2Q9P2E5 772 aa17.04■□□□□ 0.32
HDAC1-208ENST00000482310 BCORQ6W2J9 1755 aa17.04■□□□□ 0.32
HDAC1-208ENST00000482310 NUP98P52948 1817 aa17.03■□□□□ 0.32
HDAC1-208ENST00000482310 MSH5O43196 834 aa17.03■□□□□ 0.32
HDAC1-208ENST00000482310 BCL2L13Q9BXK5 485 aa17.03■□□□□ 0.32
HDAC1-208ENST00000482310 ARFGEF2Q9Y6D5 1785 aa17.02■□□□□ 0.32
HDAC1-208ENST00000482310 SCN7AQ01118 1682 aa17.02■□□□□ 0.32
HDAC1-208ENST00000482310 NBPF26B4DH59 902 aa17.02■□□□□ 0.32
HDAC1-208ENST00000482310 VAMP4O75379 141 aa17.02■□□□□ 0.32
HDAC1-208ENST00000482310 HOXB7P09629 217 aa17.02■□□□□ 0.32
HDAC1-208ENST00000482310 NBPF14Q5TI25 921 aa17.02■□□□□ 0.32
HDAC1-208ENST00000482310 NBPF10Q6P3W6 841 aaKnown RBP17.02■□□□□ 0.32
HDAC1-208ENST00000482310 NBPF15Q8N660 670 aa17.02■□□□□ 0.32
HDAC1-208ENST00000482310 AKT1S1Q96B36 256 aa17.02■□□□□ 0.32
HDAC1-208ENST00000482310 RTCBQ9Y3I0 505 aaKnown RBP17.02■□□□□ 0.32
HDAC1-208ENST00000482310 AFDNP55196 1824 aaKnown RBP17.01■□□□□ 0.31
HDAC1-208ENST00000482310 SLC15A2Q16348 729 aa17.01■□□□□ 0.31
HDAC1-208ENST00000482310 CCDC30Q5VVM6 783 aa17.01■□□□□ 0.31
HDAC1-208ENST00000482310 COL15A1P39059 1388 aa17.01■□□□□ 0.31
HDAC1-208ENST00000482310 SOS1Q07889 1333 aaPredicted RBP17■□□□□ 0.31
HDAC1-208ENST00000482310 CASZ1Q86V15 1759 aa17■□□□□ 0.31
HDAC1-208ENST00000482310 AIMP1Q12904 312 aaKnown RBP17■□□□□ 0.31
HDAC1-208ENST00000482310 NPM2Q86SE8 214 aaKnown RBP17■□□□□ 0.31
HDAC1-208ENST00000482310 STK31Q9BXU1 1019 aa17■□□□□ 0.31
HDAC1-208ENST00000482310 PDGFDQ9GZP0 370 aaPredicted RBP17■□□□□ 0.31
HDAC1-208ENST00000482310 ANKRD36CQ5JPF3 1778 aa17■□□□□ 0.31
HDAC1-208ENST00000482310 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.99■□□□□ 0.31
HDAC1-208ENST00000482310 RPS6KA4O75676 772 aa16.99■□□□□ 0.31
HDAC1-208ENST00000482310 RC3H1Q5TC82 1133 aaKnown RBP16.99■□□□□ 0.31
HDAC1-208ENST00000482310 PNPLA7Q6ZV29 1317 aa16.98■□□□□ 0.31
HDAC1-208ENST00000482310 PDIA6Q15084 440 aa16.98■□□□□ 0.31
HDAC1-208ENST00000482310 DBF4Q9UBU7 674 aaPredicted RBP16.98■□□□□ 0.31
HDAC1-208ENST00000482310 SLC4A2P04920 1241 aa16.97■□□□□ 0.31
HDAC1-208ENST00000482310 PHAXQ9H814 394 aaKnown RBP16.97■□□□□ 0.31
HDAC1-208ENST00000482310 DDX21Q9NR30 783 aaKnown RBP eCLIP16.97■□□□□ 0.31
HDAC1-208ENST00000482310 SMC4Q9NTJ3 1288 aa16.97■□□□□ 0.31
HDAC1-208ENST00000482310 SRP68Q9UHB9 627 aaKnown RBP16.97■□□□□ 0.31
HDAC1-208ENST00000482310 TBC1D2BQ9UPU7 963 aa16.97■□□□□ 0.31
HDAC1-208ENST00000482310 ERBB4Q15303 1308 aa16.96■□□□□ 0.31
HDAC1-208ENST00000482310 RFC4P35249 363 aa16.96■□□□□ 0.31
HDAC1-208ENST00000482310 IL6STP40189 918 aaPredicted RBP16.96■□□□□ 0.31
HDAC1-208ENST00000482310 TRAPPC3LQ5T215 181 aa16.96■□□□□ 0.31
HDAC1-208ENST00000482310 TTLL7Q6ZT98 887 aa16.96■□□□□ 0.31
HDAC1-208ENST00000482310 G2E3Q7L622 706 aa16.96■□□□□ 0.31
HDAC1-208ENST00000482310 COL23A1Q86Y22 540 aaPredicted RBP16.96■□□□□ 0.31
HDAC1-208ENST00000482310 XAGE3Q8WTP9 111 aa16.96■□□□□ 0.31
HDAC1-208ENST00000482310 SSH1Q8WYL5 1049 aa16.96■□□□□ 0.31
HDAC1-208ENST00000482310 ARHGEF1Q92888 912 aaKnown RBP16.96■□□□□ 0.31
HDAC1-208ENST00000482310 HMGB2P26583 209 aaKnown RBP16.95■□□□□ 0.3
HDAC1-208ENST00000482310 SSFA2P28290 1259 aa16.95■□□□□ 0.3
HDAC1-208ENST00000482310 EIF5P55010 431 aaKnown RBP16.95■□□□□ 0.3
HDAC1-208ENST00000482310 COPS6Q7L5N1 327 aa16.95■□□□□ 0.3
HDAC1-208ENST00000482310 DZIP3Q86Y13 1208 aaKnown RBP16.95■□□□□ 0.3
HDAC1-208ENST00000482310 ZBTB3Q9H5J0 574 aa16.95■□□□□ 0.3
HDAC1-208ENST00000482310 MSL1Q68DK7 614 aa16.94■□□□□ 0.3
HDAC1-208ENST00000482310 KIF6Q6ZMV9 814 aa16.94■□□□□ 0.3
HDAC1-208ENST00000482310 HYPKQ9NX55 129 aa16.94■□□□□ 0.3
HDAC1-208ENST00000482310 BCAR3O75815 825 aa16.93■□□□□ 0.3
HDAC1-208ENST00000482310 CT47B1P0C2W7 299 aaPredicted RBP16.93■□□□□ 0.3
HDAC1-208ENST00000482310 RARSP54136 660 aaKnown RBP16.93■□□□□ 0.3
HDAC1-208ENST00000482310 USPL1Q5W0Q7 1092 aa16.93■□□□□ 0.3
HDAC1-208ENST00000482310 LRP10Q7Z4F1 713 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms