RNA–Protein interactions for RNA: ENST00000468937.2

SYNE1-218, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 688 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-218ENST00000468937 SLC9A9Q8IVB4 645 aa10.69□□□□□ -0.7
SYNE1-218ENST00000468937 CHMP3Q9Y3E7 222 aa10.69□□□□□ -0.7
SYNE1-218ENST00000468937 SFI1A8K8P3 1242 aa10.68□□□□□ -0.7
SYNE1-218ENST00000468937 DKK1O94907 266 aa10.68□□□□□ -0.7
SYNE1-218ENST00000468937 TATP17735 454 aaPredicted RBP10.68□□□□□ -0.7
SYNE1-218ENST00000468937 RFX1P22670 979 aa10.68□□□□□ -0.7
SYNE1-218ENST00000468937 CRTC2Q53ET0 693 aaPredicted RBP10.68□□□□□ -0.7
SYNE1-218ENST00000468937 ZDHHC3Q9NYG2 299 aa10.68□□□□□ -0.7
SYNE1-218ENST00000468937 DPYDQ12882 1025 aa10.67□□□□□ -0.7
SYNE1-218ENST00000468937 TEAD4Q15561 434 aa10.67□□□□□ -0.7
SYNE1-218ENST00000468937 ANKMY2Q8IV38 441 aa10.67□□□□□ -0.7
SYNE1-218ENST00000468937 ZNF295-AS1Q8N0V1 137 aa10.67□□□□□ -0.7
SYNE1-218ENST00000468937 GTPBP3Q969Y2 492 aaKnown RBP10.67□□□□□ -0.7
SYNE1-218ENST00000468937 CNTNAP3BQ96NU0 1288 aa10.67□□□□□ -0.7
SYNE1-218ENST00000468937 CNTNAP3Q9BZ76 1288 aa10.67□□□□□ -0.7
SYNE1-218ENST00000468937 CRISPLD1Q9H336 500 aa10.67□□□□□ -0.7
SYNE1-218ENST00000468937 RUBCNLQ9H714 662 aa10.67□□□□□ -0.7
SYNE1-218ENST00000468937 USP3Q9Y6I4 520 aa10.67□□□□□ -0.7
SYNE1-218ENST00000468937 NOS2P35228 1153 aa10.66□□□□□ -0.7
SYNE1-218ENST00000468937 TSEN2Q8NCE0 465 aaKnown RBP10.66□□□□□ -0.7
SYNE1-218ENST00000468937 PSMA6P60900 246 aaKnown RBP10.65□□□□□ -0.7
SYNE1-218ENST00000468937 ZSCAN1Q8NBB4 408 aa10.65□□□□□ -0.7
SYNE1-218ENST00000468937 GAS2L2Q8NHY3 880 aa10.65□□□□□ -0.7
SYNE1-218ENST00000468937 L3MBTL2Q969R5 705 aa10.65□□□□□ -0.7
SYNE1-218ENST00000468937 ZNF232Q9UNY5 417 aa10.65□□□□□ -0.7
SYNE1-218ENST00000468937 PHF24Q9UPV7 400 aa10.65□□□□□ -0.7
SYNE1-218ENST00000468937 SERTM1A2A2V5 107 aa10.64□□□□□ -0.71
SYNE1-218ENST00000468937 FAM181BA6NEQ2 426 aa10.64□□□□□ -0.71
SYNE1-218ENST00000468937 ARSJQ5FYB0 599 aaPredicted RBP10.64□□□□□ -0.71
SYNE1-218ENST00000468937 FIGNL1Q6PIW4 674 aa10.64□□□□□ -0.71
SYNE1-218ENST00000468937 HINFPQ9BQA5 517 aa10.64□□□□□ -0.71
SYNE1-218ENST00000468937 CFHR5Q9BXR6 569 aa10.64□□□□□ -0.71
SYNE1-218ENST00000468937 TSPAN10Q9H1Z9 355 aaPredicted RBP10.64□□□□□ -0.71
SYNE1-218ENST00000468937 ARID3CA6NKF2 412 aa10.63□□□□□ -0.71
SYNE1-218ENST00000468937 ATP4AP20648 1035 aa10.63□□□□□ -0.71
SYNE1-218ENST00000468937 KRT76Q01546 638 aa10.63□□□□□ -0.71
SYNE1-218ENST00000468937 RNFT1Q5M7Z0 435 aa10.63□□□□□ -0.71
SYNE1-218ENST00000468937 TBCELQ5QJ74 424 aa10.63□□□□□ -0.71
SYNE1-218ENST00000468937 NLRP8Q86W28 1048 aa10.63□□□□□ -0.71
SYNE1-218ENST00000468937 FAM200AQ8TCP9 573 aa10.63□□□□□ -0.71
SYNE1-218ENST00000468937 GPR25O00155 361 aa10.62□□□□□ -0.71
SYNE1-218ENST00000468937 CDCA8Q53HL2 280 aa10.62□□□□□ -0.71
SYNE1-218ENST00000468937 BICDL1Q6ZP65 573 aa10.62□□□□□ -0.71
SYNE1-218ENST00000468937 STK17AQ9UEE5 414 aa10.62□□□□□ -0.71
SYNE1-218ENST00000468937 NSFL1CQ9UNZ2 370 aaKnown RBP10.62□□□□□ -0.71
SYNE1-218ENST00000468937 PARP3Q9Y6F1 533 aa10.62□□□□□ -0.71
SYNE1-218ENST00000468937 PPP1R12BO60237 982 aaPredicted RBP10.61□□□□□ -0.71
SYNE1-218ENST00000468937 ZDHHC1Q8WTX9 485 aa10.61□□□□□ -0.71
SYNE1-218ENST00000468937 MBIPQ9NS73 344 aa10.61□□□□□ -0.71
SYNE1-218ENST00000468937 GPC6Q9Y625 555 aaPredicted RBP10.61□□□□□ -0.71
SYNE1-218ENST00000468937 GJA3Q9Y6H8 435 aa10.61□□□□□ -0.71
SYNE1-218ENST00000468937 ATAD2Q6PL18 1390 aa10.61□□□□□ -0.71
SYNE1-218ENST00000468937 A0A1W2PNR3 127 aa10.6□□□□□ -0.71
SYNE1-218ENST00000468937 SRSF11Q05519 484 aaKnown RBP10.6□□□□□ -0.71
SYNE1-218ENST00000468937 GAS6Q14393 721 aa10.6□□□□□ -0.71
SYNE1-218ENST00000468937 STAG2Q8N3U4 1231 aa10.6□□□□□ -0.71
SYNE1-218ENST00000468937 ARXQ96QS3 562 aa10.6□□□□□ -0.71
SYNE1-218ENST00000468937 EML1O00423 815 aa10.59□□□□□ -0.71
SYNE1-218ENST00000468937 THBS1P07996 1170 aa10.59□□□□□ -0.71
SYNE1-218ENST00000468937 TXLNAP40222 546 aa10.59□□□□□ -0.71
SYNE1-218ENST00000468937 HIRAP54198 1017 aaPredicted RBP10.59□□□□□ -0.71
SYNE1-218ENST00000468937 ELOAQ14241 798 aaKnown RBP10.59□□□□□ -0.71
SYNE1-218ENST00000468937 SCG3Q8WXD2 468 aaKnown RBP10.59□□□□□ -0.71
SYNE1-218ENST00000468937 ZIC5Q96T25 663 aa10.59□□□□□ -0.71
SYNE1-218ENST00000468937 NEUROD4Q9HD90 331 aa10.59□□□□□ -0.71
SYNE1-218ENST00000468937 ATXN7L1Q9ULK2 861 aaPredicted RBP10.59□□□□□ -0.71
SYNE1-218ENST00000468937 NOVA2Q9UNW9 492 aaKnown RBP10.59□□□□□ -0.71
SYNE1-218ENST00000468937 SLURP2P0DP57 97 aa10.58□□□□□ -0.72
SYNE1-218ENST00000468937 MX2P20592 715 aa10.58□□□□□ -0.72
SYNE1-218ENST00000468937 C1orf53Q5VUE5 145 aa10.58□□□□□ -0.72
SYNE1-218ENST00000468937 PBXIP1Q96AQ6 731 aa10.58□□□□□ -0.72
SYNE1-218ENST00000468937 PCDHGC4Q9Y5F7 938 aa10.58□□□□□ -0.72
SYNE1-218ENST00000468937 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.57□□□□□ -0.72
SYNE1-218ENST00000468937 UBAP2LQ14157 1087 aaKnown RBP10.57□□□□□ -0.72
SYNE1-218ENST00000468937 POTEAQ6S8J7 498 aa10.57□□□□□ -0.72
SYNE1-218ENST00000468937 ZCCHC2Q9C0B9 1178 aaKnown RBP10.57□□□□□ -0.72
SYNE1-218ENST00000468937 C21orf2O43822 256 aa10.56□□□□□ -0.72
SYNE1-218ENST00000468937 ATG7O95352 703 aa10.56□□□□□ -0.72
SYNE1-218ENST00000468937 ADAMTS2O95450 1211 aa10.56□□□□□ -0.72
SYNE1-218ENST00000468937 IGFBP4P22692 258 aa10.56□□□□□ -0.72
SYNE1-218ENST00000468937 LORP23490 312 aaPredicted RBP10.56□□□□□ -0.72
SYNE1-218ENST00000468937 SRPK2P78362 688 aaKnown RBP10.56□□□□□ -0.72
SYNE1-218ENST00000468937 CHMP7Q8WUX9 453 aaPredicted RBP10.56□□□□□ -0.72
SYNE1-218ENST00000468937 ATXN7O15265 892 aaPredicted RBP10.55□□□□□ -0.72
SYNE1-218ENST00000468937 CCDC82Q8N4S0 544 aa10.55□□□□□ -0.72
SYNE1-218ENST00000468937 RHPN1Q8TCX5 695 aa10.55□□□□□ -0.72
SYNE1-218ENST00000468937 C2orf49Q9BVC5 232 aaPredicted RBP10.55□□□□□ -0.72
SYNE1-218ENST00000468937 HCN4Q9Y3Q4 1203 aa10.55□□□□□ -0.72
SYNE1-218ENST00000468937 IGF1RP08069 1367 aa10.54□□□□□ -0.72
SYNE1-218ENST00000468937 MAP2K3P46734 347 aa10.54□□□□□ -0.72
SYNE1-218ENST00000468937 SWI5Q1ZZU3 235 aa10.54□□□□□ -0.72
SYNE1-218ENST00000468937 SH3PXD2AQ5TCZ1 1133 aa10.54□□□□□ -0.72
SYNE1-218ENST00000468937 PHACTR1Q9C0D0 580 aa10.54□□□□□ -0.72
SYNE1-218ENST00000468937 ANKIB1Q9P2G1 1089 aa10.54□□□□□ -0.72
SYNE1-218ENST00000468937 ACIN1Q9UKV3 1341 aaKnown RBP10.54□□□□□ -0.72
SYNE1-218ENST00000468937 BNIP3LO60238 219 aa10.53□□□□□ -0.72
SYNE1-218ENST00000468937 HIF1AQ16665 826 aa10.53□□□□□ -0.72
SYNE1-218ENST00000468937 SAMD5Q5TGI4 173 aa10.53□□□□□ -0.72
SYNE1-218ENST00000468937 ABHD17AQ96GS6 310 aa10.53□□□□□ -0.72
SYNE1-218ENST00000468937 NDFIP2Q9NV92 336 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms