RNA–Protein interactions for RNA: ENST00000468143.1

CDHR3-205, Transcript of cadherin related family member 3, humanhuman

TSL 4

Gene CDHR3, Length 575 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDHR3-205ENST00000468143 CD2APQ9Y5K6 639 aa15.28■□□□□ 0.04
CDHR3-205ENST00000468143 USP42Q9H9J4 1324 aaKnown RBP15.27■□□□□ 0.04
CDHR3-205ENST00000468143 PRAMEF22A3QJZ6 481 aa15.27■□□□□ 0.04
CDHR3-205ENST00000468143 A1BGP04217 495 aa15.27■□□□□ 0.04
CDHR3-205ENST00000468143 YY1P25490 414 aa15.27■□□□□ 0.04
CDHR3-205ENST00000468143 TAF7Q15545 349 aaPredicted RBP15.27■□□□□ 0.04
CDHR3-205ENST00000468143 USP16Q9Y5T5 823 aa15.27■□□□□ 0.04
CDHR3-205ENST00000468143 MYH14Q7Z406 1995 aaKnown RBP15.27■□□□□ 0.03
CDHR3-205ENST00000468143 VIRMAQ69YN4 1812 aaKnown RBP15.27■□□□□ 0.03
CDHR3-205ENST00000468143 ZPR1O75312 459 aa15.26■□□□□ 0.03
CDHR3-205ENST00000468143 RIPK4P57078 832 aa15.26■□□□□ 0.03
CDHR3-205ENST00000468143 WDR43Q15061 677 aaKnown RBP eCLIP15.26■□□□□ 0.03
CDHR3-205ENST00000468143 TEX13AQ9BXU3 409 aaPredicted RBP15.26■□□□□ 0.03
CDHR3-205ENST00000468143 RRP7AQ9Y3A4 280 aaKnown RBP15.26■□□□□ 0.03
CDHR3-205ENST00000468143 ZNF330Q9Y3S2 320 aaPredicted RBP15.26■□□□□ 0.03
CDHR3-205ENST00000468143 PARP3Q9Y6F1 533 aa15.26■□□□□ 0.03
CDHR3-205ENST00000468143 PIP4K2AP48426 406 aaPredicted RBP15.25■□□□□ 0.03
CDHR3-205ENST00000468143 NEUROD2Q15784 382 aa15.25■□□□□ 0.03
CDHR3-205ENST00000468143 ADAMTS8Q9UP79 889 aa15.25■□□□□ 0.03
CDHR3-205ENST00000468143 YBX3P16989 372 aaKnown RBP eCLIP15.24■□□□□ 0.03
CDHR3-205ENST00000468143 COL15A1P39059 1388 aa15.24■□□□□ 0.03
CDHR3-205ENST00000468143 SNRPA1P09661 255 aaKnown RBP15.23■□□□□ 0.03
CDHR3-205ENST00000468143 TMPOP42166 694 aaKnown RBP15.23■□□□□ 0.03
CDHR3-205ENST00000468143 EIF5P55010 431 aaKnown RBP15.23■□□□□ 0.03
CDHR3-205ENST00000468143 DDR1Q08345 913 aa15.23■□□□□ 0.03
CDHR3-205ENST00000468143 NARFQ9UHQ1 456 aa15.23■□□□□ 0.03
CDHR3-205ENST00000468143 TBC1D2BQ9UPU7 963 aa15.23■□□□□ 0.03
CDHR3-205ENST00000468143 CICQ96RK0 1608 aaPredicted RBP15.23■□□□□ 0.03
CDHR3-205ENST00000468143 SIPA1L3O60292 1781 aaPredicted RBP15.23■□□□□ 0.03
CDHR3-205ENST00000468143 UBR2Q8IWV8 1755 aa15.23■□□□□ 0.03
CDHR3-205ENST00000468143 TM4SF1P30408 202 aa15.22■□□□□ 0.03
CDHR3-205ENST00000468143 BCL2L12Q9HB09 334 aa15.22■□□□□ 0.03
CDHR3-205ENST00000468143 A0A0G2JLW4 131 aa15.21■□□□□ 0.03
CDHR3-205ENST00000468143 CCDC184Q52MB2 194 aa15.21■□□□□ 0.03
CDHR3-205ENST00000468143 BICDL1Q6ZP65 573 aa15.21■□□□□ 0.03
CDHR3-205ENST00000468143 PNISRQ8TF01 805 aaKnown RBP15.21■□□□□ 0.03
CDHR3-205ENST00000468143 RUNDC1Q96C34 613 aa15.21■□□□□ 0.03
CDHR3-205ENST00000468143 C4AP0C0L4 1744 aa15.2■□□□□ 0.02
CDHR3-205ENST00000468143 A0A087WZG4 1122 aa15.2■□□□□ 0.02
CDHR3-205ENST00000468143 POLRMTO00411 1230 aaKnown RBP15.2■□□□□ 0.02
CDHR3-205ENST00000468143 IL6STP40189 918 aaPredicted RBP15.2■□□□□ 0.02
CDHR3-205ENST00000468143 NFIXQ14938 502 aa15.2■□□□□ 0.02
CDHR3-205ENST00000468143 EIF4A1P60842 406 aaKnown RBP15.19■□□□□ 0.02
CDHR3-205ENST00000468143 NPM2Q86SE8 214 aaKnown RBP15.19■□□□□ 0.02
CDHR3-205ENST00000468143 GRIN3BO60391 1043 aa15.18■□□□□ 0.02
CDHR3-205ENST00000468143 DPEP1P16444 411 aa15.18■□□□□ 0.02
CDHR3-205ENST00000468143 TGFB2P61812 414 aa15.18■□□□□ 0.02
CDHR3-205ENST00000468143 TSPYL4Q9UJ04 414 aa15.18■□□□□ 0.02
CDHR3-205ENST00000468143 NBPF26B4DH59 902 aa15.17■□□□□ 0.02
CDHR3-205ENST00000468143 GIGYF1O75420 1035 aaPredicted RBP15.17■□□□□ 0.02
CDHR3-205ENST00000468143 SERPINB2P05120 415 aa15.17■□□□□ 0.02
CDHR3-205ENST00000468143 TBC1D9BQ66K14 1250 aa15.17■□□□□ 0.02
CDHR3-205ENST00000468143 NBPF10Q6P3W6 841 aaKnown RBP15.17■□□□□ 0.02
CDHR3-205ENST00000468143 DZIP3Q86Y13 1208 aaKnown RBP15.17■□□□□ 0.02
CDHR3-205ENST00000468143 NBPF15Q8N660 670 aa15.17■□□□□ 0.02
CDHR3-205ENST00000468143 LAS1LQ9Y4W2 734 aaKnown RBP15.17■□□□□ 0.02
CDHR3-205ENST00000468143 DLG5Q8TDM6 1919 aa15.16■□□□□ 0.02
CDHR3-205ENST00000468143 LMOD3Q0VAK6 560 aa15.16■□□□□ 0.02
CDHR3-205ENST00000468143 NGEFQ8N5V2 710 aa15.16■□□□□ 0.02
CDHR3-205ENST00000468143 TRIM35Q9UPQ4 493 aa15.16■□□□□ 0.02
CDHR3-205ENST00000468143 C10orf71Q711Q0 1435 aa15.16■□□□□ 0.02
CDHR3-205ENST00000468143 PXDNLA1KZ92 1463 aa15.15■□□□□ 0.02
CDHR3-205ENST00000468143 SENP3-EIF4A1A0A087X0R7 540 aa15.15■□□□□ 0.02
CDHR3-205ENST00000468143 ANP32CO43423 234 aa15.15■□□□□ 0.02
CDHR3-205ENST00000468143 CAMTA2O94983 1202 aa15.15■□□□□ 0.02
CDHR3-205ENST00000468143 CHRNA5P30532 468 aa15.15■□□□□ 0.02
CDHR3-205ENST00000468143 BCS1LQ9Y276 419 aa15.15■□□□□ 0.02
CDHR3-205ENST00000468143 APAF1O14727 1248 aa15.14■□□□□ 0.01
CDHR3-205ENST00000468143 KCNA3P22001 575 aa15.14■□□□□ 0.01
CDHR3-205ENST00000468143 CCDC24Q8N4L8 307 aa15.14■□□□□ 0.01
CDHR3-205ENST00000468143 MYL6BP14649 208 aa15.13■□□□□ 0.01
CDHR3-205ENST00000468143 EIF2S2P20042 333 aaKnown RBP15.13■□□□□ 0.01
CDHR3-205ENST00000468143 KRT24Q2M2I5 525 aa15.11■□□□□ 0.01
CDHR3-205ENST00000468143 ZNF784Q8NCA9 323 aaPredicted RBP15.11■□□□□ 0.01
CDHR3-205ENST00000468143 NECTIN2Q92692 538 aa15.11■□□□□ 0.01
CDHR3-205ENST00000468143 SETDB2Q96T68 719 aa15.11■□□□□ 0.01
CDHR3-205ENST00000468143 MRS2Q9HD23 443 aa15.11■□□□□ 0.01
CDHR3-205ENST00000468143 PIM2Q9P1W9 311 aa15.11■□□□□ 0.01
CDHR3-205ENST00000468143 CHL1O00533 1208 aa15.1■□□□□ 0.01
CDHR3-205ENST00000468143 HLFQ16534 295 aa15.1■□□□□ 0.01
CDHR3-205ENST00000468143 BABAM1Q9NWV8 329 aa15.1■□□□□ 0.01
CDHR3-205ENST00000468143 KDM3BQ7LBC6 1761 aa15.1■□□□□ 0.01
CDHR3-205ENST00000468143 N4BP2Q86UW6 1770 aaPredicted RBP15.1■□□□□ 0.01
CDHR3-205ENST00000468143 CARMIL3Q8ND23 1372 aa15.1■□□□□ 0.01
CDHR3-205ENST00000468143 FAM177BA6PVY3 158 aa15.09■□□□□ 0.01
CDHR3-205ENST00000468143 NPHP1O15259 732 aa15.09■□□□□ 0.01
CDHR3-205ENST00000468143 PRR5LQ6MZQ0 368 aa15.09■□□□□ 0.01
CDHR3-205ENST00000468143 TTLL7Q6ZT98 887 aa15.09■□□□□ 0.01
CDHR3-205ENST00000468143 ARHGAP27Q6ZUM4 889 aa15.09■□□□□ 0.01
CDHR3-205ENST00000468143 ANXA1P04083 346 aa15.08■□□□□ 0
CDHR3-205ENST00000468143 DALRD3Q5D0E6 543 aaKnown RBP15.08■□□□□ 0
CDHR3-205ENST00000468143 CLEC4GQ6UXB4 293 aa15.08■□□□□ 0
CDHR3-205ENST00000468143 C2CD5Q86YS7 1000 aa15.08■□□□□ 0
CDHR3-205ENST00000468143 ZNF652Q9Y2D9 606 aa15.08■□□□□ 0
CDHR3-205ENST00000468143 KIAA1551Q9HCM1 1747 aa15.08■□□□□ 0
CDHR3-205ENST00000468143 KIF13BQ9NQT8 1826 aa15.08■□□□□ 0
CDHR3-205ENST00000468143 PDIA6Q15084 440 aa15.07■□□□□ 0
CDHR3-205ENST00000468143 ZBTB3Q9H5J0 574 aa15.07■□□□□ 0
CDHR3-205ENST00000468143 NIP7Q9Y221 180 aaKnown RBP eCLIP15.07■□□□□ 0
CDHR3-205ENST00000468143 H0YIN7 160 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms