RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 CCDC87Q9NVE4 849 aa15.28■□□□□ 0.04
CUX1-207ENST00000465461 ZBTB1Q9Y2K1 713 aa15.28■□□□□ 0.04
CUX1-207ENST00000465461 KDM3BQ7LBC6 1761 aa15.28■□□□□ 0.04
CUX1-207ENST00000465461 SNRPA1P09661 255 aaKnown RBP15.27■□□□□ 0.04
CUX1-207ENST00000465461 HMGB2P26583 209 aaKnown RBP15.27■□□□□ 0.04
CUX1-207ENST00000465461 SSFA2P28290 1259 aa15.27■□□□□ 0.04
CUX1-207ENST00000465461 TRAPPC3LQ5T215 181 aa15.27■□□□□ 0.04
CUX1-207ENST00000465461 MTFR1LQ9H019 292 aa15.27■□□□□ 0.04
CUX1-207ENST00000465461 CICQ96RK0 1608 aaPredicted RBP15.26■□□□□ 0.03
CUX1-207ENST00000465461 CCER2I3L3R5 266 aa15.26■□□□□ 0.03
CUX1-207ENST00000465461 STARD3NLO95772 234 aa15.26■□□□□ 0.03
CUX1-207ENST00000465461 PTGER2P43116 358 aa15.26■□□□□ 0.03
CUX1-207ENST00000465461 KRT24Q2M2I5 525 aa15.26■□□□□ 0.03
CUX1-207ENST00000465461 FLAD1Q8NFF5 587 aa15.26■□□□□ 0.03
CUX1-207ENST00000465461 CHL1O00533 1208 aa15.25■□□□□ 0.03
CUX1-207ENST00000465461 SRP68Q9UHB9 627 aaKnown RBP15.25■□□□□ 0.03
CUX1-207ENST00000465461 ZNF330Q9Y3S2 320 aaPredicted RBP15.25■□□□□ 0.03
CUX1-207ENST00000465461 GIGYF1O75420 1035 aaPredicted RBP15.24■□□□□ 0.03
CUX1-207ENST00000465461 WWC1Q8IX03 1113 aa15.24■□□□□ 0.03
CUX1-207ENST00000465461 SLC16A10Q8TF71 515 aa15.24■□□□□ 0.03
CUX1-207ENST00000465461 SGIP1Q9BQI5 828 aa15.24■□□□□ 0.03
CUX1-207ENST00000465461 TEX13AQ9BXU3 409 aaPredicted RBP15.24■□□□□ 0.03
CUX1-207ENST00000465461 LRP5O75197 1615 aa15.24■□□□□ 0.03
CUX1-207ENST00000465461 SOS1Q07889 1333 aaPredicted RBP15.23■□□□□ 0.03
CUX1-207ENST00000465461 ADRA2BP18089 450 aa15.23■□□□□ 0.03
CUX1-207ENST00000465461 RFC4P35249 363 aa15.23■□□□□ 0.03
CUX1-207ENST00000465461 MBIPQ9NS73 344 aa15.23■□□□□ 0.03
CUX1-207ENST00000465461 PPP1R1BQ9UD71 204 aaPredicted RBP15.23■□□□□ 0.03
CUX1-207ENST00000465461 ZNF853P0CG23 659 aa15.22■□□□□ 0.03
CUX1-207ENST00000465461 NECTIN2Q92692 538 aa15.22■□□□□ 0.03
CUX1-207ENST00000465461 CFAP44Q96MT7 982 aa15.22■□□□□ 0.03
CUX1-207ENST00000465461 ARXQ96QS3 562 aa15.22■□□□□ 0.03
CUX1-207ENST00000465461 C4AP0C0L4 1744 aa15.21■□□□□ 0.03
CUX1-207ENST00000465461 NBPF26B4DH59 902 aa15.21■□□□□ 0.03
CUX1-207ENST00000465461 EIF2S2P20042 333 aaKnown RBP15.21■□□□□ 0.03
CUX1-207ENST00000465461 CCDC27Q2M243 656 aa15.21■□□□□ 0.03
CUX1-207ENST00000465461 USPL1Q5W0Q7 1092 aa15.21■□□□□ 0.03
CUX1-207ENST00000465461 NBPF10Q6P3W6 841 aaKnown RBP15.21■□□□□ 0.03
CUX1-207ENST00000465461 NBPF15Q8N660 670 aa15.21■□□□□ 0.03
CUX1-207ENST00000465461 BABAM1Q9NWV8 329 aa15.21■□□□□ 0.03
CUX1-207ENST00000465461 COL15A1P39059 1388 aa15.21■□□□□ 0.02
CUX1-207ENST00000465461 GYS1P13807 737 aa15.2■□□□□ 0.02
CUX1-207ENST00000465461 EIF5P55010 431 aaKnown RBP15.2■□□□□ 0.02
CUX1-207ENST00000465461 KLHL34Q8N239 644 aa15.2■□□□□ 0.02
CUX1-207ENST00000465461 NGEFQ8N5V2 710 aa15.2■□□□□ 0.02
CUX1-207ENST00000465461 TSR2Q969E8 191 aaKnown RBP15.2■□□□□ 0.02
CUX1-207ENST00000465461 IFT57Q9NWB7 429 aa15.2■□□□□ 0.02
CUX1-207ENST00000465461 TBC1D2BQ9UPU7 963 aa15.2■□□□□ 0.02
CUX1-207ENST00000465461 ELL2O00472 640 aaPredicted RBP15.19■□□□□ 0.02
CUX1-207ENST00000465461 POLD1P28340 1107 aa15.19■□□□□ 0.02
CUX1-207ENST00000465461 GNAI1P63096 354 aa15.19■□□□□ 0.02
CUX1-207ENST00000465461 FKBP8Q14318 412 aa15.19■□□□□ 0.02
CUX1-207ENST00000465461 USP42Q9H9J4 1324 aaKnown RBP15.18■□□□□ 0.02
CUX1-207ENST00000465461 ZPR1O75312 459 aa15.18■□□□□ 0.02
CUX1-207ENST00000465461 ANXA1P04083 346 aa15.18■□□□□ 0.02
CUX1-207ENST00000465461 MYL6BP14649 208 aa15.18■□□□□ 0.02
CUX1-207ENST00000465461 IL6STP40189 918 aaPredicted RBP15.18■□□□□ 0.02
CUX1-207ENST00000465461 CALD1Q05682 793 aaKnown RBP15.18■□□□□ 0.02
CUX1-207ENST00000465461 SPINK5Q9NQ38 1064 aaPredicted RBP15.18■□□□□ 0.02
CUX1-207ENST00000465461 COL24A1Q17RW2 1714 aa15.17■□□□□ 0.02
CUX1-207ENST00000465461 LAMB4A4D0S4 1761 aa15.17■□□□□ 0.02
CUX1-207ENST00000465461 C8orf58Q8NAV2 365 aa15.17■□□□□ 0.02
CUX1-207ENST00000465461 FHDC1Q9C0D6 1143 aaPredicted RBP15.17■□□□□ 0.02
CUX1-207ENST00000465461 BCL2L12Q9HB09 334 aa15.17■□□□□ 0.02
CUX1-207ENST00000465461 NARFQ9UHQ1 456 aa15.17■□□□□ 0.02
CUX1-207ENST00000465461 MMP10P09238 476 aa15.16■□□□□ 0.02
CUX1-207ENST00000465461 PROSER3Q2NL68 480 aa15.16■□□□□ 0.02
CUX1-207ENST00000465461 DUSP27Q5VZP5 1158 aa15.16■□□□□ 0.02
CUX1-207ENST00000465461 A0A087WZG4 1122 aa15.15■□□□□ 0.02
CUX1-207ENST00000465461 PDIA6Q15084 440 aa15.15■□□□□ 0.02
CUX1-207ENST00000465461 NCBP3Q53F19 620 aaKnown RBP15.15■□□□□ 0.02
CUX1-207ENST00000465461 BICDL1Q6ZP65 573 aa15.15■□□□□ 0.02
CUX1-207ENST00000465461 DZIP3Q86Y13 1208 aaKnown RBP15.15■□□□□ 0.02
CUX1-207ENST00000465461 NLGN1Q8N2Q7 840 aa15.15■□□□□ 0.02
CUX1-207ENST00000465461 TSPYL6Q8N831 410 aa15.15■□□□□ 0.02
CUX1-207ENST00000465461 NPM2Q86SE8 214 aaKnown RBP15.14■□□□□ 0.01
CUX1-207ENST00000465461 WDR63Q8IWG1 891 aa15.14■□□□□ 0.01
CUX1-207ENST00000465461 CAMTA2O94983 1202 aa15.13■□□□□ 0.01
CUX1-207ENST00000465461 DDR1Q08345 913 aa15.13■□□□□ 0.01
CUX1-207ENST00000465461 TTLL7Q6ZT98 887 aa15.13■□□□□ 0.01
CUX1-207ENST00000465461 SYT17Q9BSW7 474 aa15.13■□□□□ 0.01
CUX1-207ENST00000465461 IL16Q14005 1332 aa15.13■□□□□ 0.01
CUX1-207ENST00000465461 TCERG1O14776 1098 aaKnown RBP15.12■□□□□ 0.01
CUX1-207ENST00000465461 TM4SF1P30408 202 aa15.12■□□□□ 0.01
CUX1-207ENST00000465461 NFIXQ14938 502 aa15.12■□□□□ 0.01
CUX1-207ENST00000465461 HDGFL1Q5TGJ6 251 aa15.12■□□□□ 0.01
CUX1-207ENST00000465461 TBC1D9BQ66K14 1250 aa15.12■□□□□ 0.01
CUX1-207ENST00000465461 CHPF2Q9P2E5 772 aa15.12■□□□□ 0.01
CUX1-207ENST00000465461 SRCAPQ6ZRS2 3230 aa15.12■□□□□ 0.01
CUX1-207ENST00000465461 ZNF521Q96K83 1311 aa15.12■□□□□ 0.01
CUX1-207ENST00000465461 FANCIQ9NVI1 1328 aa15.12■□□□□ 0.01
CUX1-207ENST00000465461 AIMP1Q12904 312 aaKnown RBP15.11■□□□□ 0.01
CUX1-207ENST00000465461 HLFQ16534 295 aa15.11■□□□□ 0.01
CUX1-207ENST00000465461 LRP10Q7Z4F1 713 aa15.11■□□□□ 0.01
CUX1-207ENST00000465461 NLGN2Q8NFZ4 835 aa15.11■□□□□ 0.01
CUX1-207ENST00000465461 PARP3Q9Y6F1 533 aa15.11■□□□□ 0.01
CUX1-207ENST00000465461 POLRMTO00411 1230 aaKnown RBP15.1■□□□□ 0.01
CUX1-207ENST00000465461 EXOSC9Q06265 439 aaKnown RBP15.1■□□□□ 0.01
CUX1-207ENST00000465461 ZBTB3Q9H5J0 574 aa15.1■□□□□ 0.01
CUX1-207ENST00000465461 COPS6Q7L5N1 327 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms