RNA–Protein interactions for RNA: ENST00000465457.1

HDAC6-215, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-215ENST00000465457 KNSTRNQ9Y448 316 aa18.48■□□□□ 0.55
HDAC6-215ENST00000465457 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.47■□□□□ 0.553e-15■□□□□ 8.1
HDAC6-215ENST00000465457 NRXN2Q9P2S2 1712 aa18.46■□□□□ 0.55
HDAC6-215ENST00000465457 RC3H1Q5TC82 1133 aaKnown RBP18.46■□□□□ 0.55
HDAC6-215ENST00000465457 USP42Q9H9J4 1324 aaKnown RBP18.46■□□□□ 0.55
HDAC6-215ENST00000465457 POLRMTO00411 1230 aaKnown RBP18.43■□□□□ 0.54
HDAC6-215ENST00000465457 CRKLP46109 303 aaKnown RBP18.43■□□□□ 0.54
HDAC6-215ENST00000465457 DICER1Q9UPY3 1922 aaKnown RBP18.43■□□□□ 0.54
HDAC6-215ENST00000465457 VIRMAQ69YN4 1812 aaKnown RBP18.42■□□□□ 0.54
HDAC6-215ENST00000465457 PTCD1O75127 700 aaKnown RBP18.42■□□□□ 0.54
HDAC6-215ENST00000465457 ANKRD31Q8N7Z5 1873 aa18.41■□□□□ 0.54
HDAC6-215ENST00000465457 COL11A2P13942 1736 aaPredicted RBP18.41■□□□□ 0.54
HDAC6-215ENST00000465457 SCN11AQ9UI33 1791 aa18.41■□□□□ 0.54
HDAC6-215ENST00000465457 GLTPD2A6NH11 291 aa18.41■□□□□ 0.54
HDAC6-215ENST00000465457 POTECB2RU33 542 aa18.41■□□□□ 0.54
HDAC6-215ENST00000465457 EIF4A2Q14240 407 aaKnown RBP18.41■□□□□ 0.54
HDAC6-215ENST00000465457 CACNA1SQ13698 1873 aa18.4■□□□□ 0.54
HDAC6-215ENST00000465457 VEGFAP15692 232 aaPredicted RBP18.4■□□□□ 0.54
HDAC6-215ENST00000465457 CARMIL3Q8ND23 1372 aa18.4■□□□□ 0.54
HDAC6-215ENST00000465457 ERVV-2B6SEH9 535 aa18.39■□□□□ 0.53
HDAC6-215ENST00000465457 HNRNPUQ00839 825 aaKnown RBP eCLIP18.39■□□□□ 0.53
HDAC6-215ENST00000465457 CCDC184Q52MB2 194 aa18.39■□□□□ 0.53
HDAC6-215ENST00000465457 AMER1Q5JTC6 1135 aaPredicted RBP18.39■□□□□ 0.53
HDAC6-215ENST00000465457 POLKQ9UBT6 870 aa18.39■□□□□ 0.53
HDAC6-215ENST00000465457 MKRN1Q9UHC7 482 aaKnown RBP18.39■□□□□ 0.53
HDAC6-215ENST00000465457 ZC3H4Q9UPT8 1303 aaKnown RBP18.39■□□□□ 0.53
HDAC6-215ENST00000465457 FER1L6Q2WGJ9 1857 aa18.39■□□□□ 0.53
HDAC6-215ENST00000465457 NFKBIEO00221 500 aa18.38■□□□□ 0.53
HDAC6-215ENST00000465457 LMNB1P20700 586 aa18.38■□□□□ 0.53
HDAC6-215ENST00000465457 SLC34A2O95436 690 aa18.37■□□□□ 0.53
HDAC6-215ENST00000465457 POTEIP0CG38 1075 aa18.37■□□□□ 0.53
HDAC6-215ENST00000465457 POTEJP0CG39 1038 aa18.37■□□□□ 0.53
HDAC6-215ENST00000465457 TM4SF1P30408 202 aa18.37■□□□□ 0.53
HDAC6-215ENST00000465457 INTS5Q6P9B9 1019 aaKnown RBP18.37■□□□□ 0.53
HDAC6-215ENST00000465457 FAM9BQ8IZU0 186 aa18.37■□□□□ 0.53
HDAC6-215ENST00000465457 FOXN1O15353 648 aa18.36■□□□□ 0.53
HDAC6-215ENST00000465457 CC2D1BQ5T0F9 858 aaKnown RBP18.36■□□□□ 0.53
HDAC6-215ENST00000465457 USPL1Q5W0Q7 1092 aa18.36■□□□□ 0.53
HDAC6-215ENST00000465457 ZBED9Q6R2W3 1325 aa18.36■□□□□ 0.53
HDAC6-215ENST00000465457 PNISRQ8TF01 805 aaKnown RBP18.36■□□□□ 0.53
HDAC6-215ENST00000465457 TNNT2P45379 298 aaPredicted RBP18.35■□□□□ 0.53
HDAC6-215ENST00000465457 CABP4P57796 275 aa18.35■□□□□ 0.53
HDAC6-215ENST00000465457 ZNF530Q6P9A1 599 aaPredicted RBP18.35■□□□□ 0.53
HDAC6-215ENST00000465457 NFIXQ14938 502 aa18.34■□□□□ 0.53
HDAC6-215ENST00000465457 GTF3C3Q9Y5Q9 886 aa18.34■□□□□ 0.53
HDAC6-215ENST00000465457 AEBP1Q8IUX7 1158 aa18.33■□□□□ 0.52
HDAC6-215ENST00000465457 SOS1Q07889 1333 aaPredicted RBP18.32■□□□□ 0.52
HDAC6-215ENST00000465457 CNGB1Q14028 1251 aaPredicted RBP18.32■□□□□ 0.52
HDAC6-215ENST00000465457 DNAJC10Q8IXB1 793 aa18.32■□□□□ 0.52
HDAC6-215ENST00000465457 NFATC2IPQ8NCF5 419 aa18.32■□□□□ 0.52
HDAC6-215ENST00000465457 BCL2L12Q9HB09 334 aa18.31■□□□□ 0.52
HDAC6-215ENST00000465457 HSP90AB1P08238 724 aaKnown RBP18.3■□□□□ 0.52
HDAC6-215ENST00000465457 CREBZFQ9NS37 354 aa18.3■□□□□ 0.52
HDAC6-215ENST00000465457 COL15A1P39059 1388 aa18.3■□□□□ 0.52
HDAC6-215ENST00000465457 CNTNAP1P78357 1384 aa18.3■□□□□ 0.52
HDAC6-215ENST00000465457 SCN7AQ01118 1682 aa18.29■□□□□ 0.52
HDAC6-215ENST00000465457 SLX4Q8IY92 1834 aa18.29■□□□□ 0.52
HDAC6-215ENST00000465457 PPP2R1AP30153 589 aa18.29■□□□□ 0.52
HDAC6-215ENST00000465457 C2CD5Q86YS7 1000 aa18.29■□□□□ 0.52
HDAC6-215ENST00000465457 TTLL6Q8N841 843 aa18.29■□□□□ 0.52
HDAC6-215ENST00000465457 ZNF219Q9P2Y4 722 aaPredicted RBP18.29■□□□□ 0.52
HDAC6-215ENST00000465457 UBR2Q8IWV8 1755 aa18.28■□□□□ 0.52
HDAC6-215ENST00000465457 ZPR1O75312 459 aa18.28■□□□□ 0.52
HDAC6-215ENST00000465457 MTHFSP49914 203 aa18.28■□□□□ 0.52
HDAC6-215ENST00000465457 PLEKHO1Q53GL0 409 aaPredicted RBP18.28■□□□□ 0.52
HDAC6-215ENST00000465457 ARFGEF2Q9Y6D5 1785 aa18.27■□□□□ 0.52
HDAC6-215ENST00000465457 SERPINB2P05120 415 aa18.27■□□□□ 0.52
HDAC6-215ENST00000465457 CHADLQ6NUI6 762 aa18.27■□□□□ 0.52
HDAC6-215ENST00000465457 ZBTB1Q9Y2K1 713 aa18.27■□□□□ 0.52
HDAC6-215ENST00000465457 MRC1P22897 1456 aa18.26■□□□□ 0.51
HDAC6-215ENST00000465457 FAM161AQ3B820 660 aa18.26■□□□□ 0.51
HDAC6-215ENST00000465457 NARFQ9UHQ1 456 aa18.26■□□□□ 0.51
HDAC6-215ENST00000465457 DDNO94850 711 aaPredicted RBP18.25■□□□□ 0.51
HDAC6-215ENST00000465457 CCDC24Q8N4L8 307 aa18.25■□□□□ 0.51
HDAC6-215ENST00000465457 SCN4AP35499 1836 aa18.25■□□□□ 0.51
HDAC6-215ENST00000465457 ADAMTSL1Q8N6G6 1762 aa18.25■□□□□ 0.51
HDAC6-215ENST00000465457 PASKQ96RG2 1323 aa18.24■□□□□ 0.51
HDAC6-215ENST00000465457 C21orf2O43822 256 aa18.24■□□□□ 0.51
HDAC6-215ENST00000465457 CYP19A1P11511 503 aaPredicted RBP18.24■□□□□ 0.51
HDAC6-215ENST00000465457 SLC39A6Q13433 755 aa18.24■□□□□ 0.51
HDAC6-215ENST00000465457 ERFEQ4G0M1 354 aa18.24■□□□□ 0.51
HDAC6-215ENST00000465457 C1orf141Q5JVX7 400 aa18.24■□□□□ 0.51
HDAC6-215ENST00000465457 BICDL1Q6ZP65 573 aa18.24■□□□□ 0.51
HDAC6-215ENST00000465457 PRDM10Q9NQV6 1147 aa18.24■□□□□ 0.51
HDAC6-215ENST00000465457 VEGFBP49765 207 aa18.23■□□□□ 0.51
HDAC6-215ENST00000465457 AMOTQ4VCS5 1084 aa18.23■□□□□ 0.51
HDAC6-215ENST00000465457 H0YIN7 160 aa18.22■□□□□ 0.51
HDAC6-215ENST00000465457 LBX1P52954 281 aa18.22■□□□□ 0.51
HDAC6-215ENST00000465457 DPY19L2Q6NUT2 758 aa18.22■□□□□ 0.51
HDAC6-215ENST00000465457 MORC1Q86VD1 984 aa18.21■□□□□ 0.51
HDAC6-215ENST00000465457 CTCFP49711 727 aaPredicted RBP18.2■□□□□ 0.5
HDAC6-215ENST00000465457 WDR43Q15061 677 aaKnown RBP eCLIP18.2■□□□□ 0.5
HDAC6-215ENST00000465457 ZNF622Q969S3 477 aaKnown RBP eCLIP18.2■□□□□ 0.57e-16■□□□□ 10
HDAC6-215ENST00000465457 ABHD8Q96I13 439 aa18.2■□□□□ 0.5
HDAC6-215ENST00000465457 LGR6Q9HBX8 967 aa18.2■□□□□ 0.5
HDAC6-215ENST00000465457 SULT6B1Q6IMI4 303 aa18.19■□□□□ 0.5
HDAC6-215ENST00000465457 SLC52A2Q9HAB3 445 aa18.19■□□□□ 0.5
HDAC6-215ENST00000465457 BCORQ6W2J9 1755 aa18.19■□□□□ 0.5
HDAC6-215ENST00000465457 HSPA8P11142 646 aaKnown RBP18.18■□□□□ 0.5
HDAC6-215ENST00000465457 TBC1D9BQ66K14 1250 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms