RNA–Protein interactions for RNA: ENST00000463230.5

R3HDM1-213, Transcript of R3H domain containing 1, humanhuman

TSL 2

Gene R3HDM1, Length 2,241 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM1-213ENST00000463230 SOS1Q07889 1333 aaPredicted RBP17.18■□□□□ 0.34
R3HDM1-213ENST00000463230 RFC4P35249 363 aa17.17■□□□□ 0.34
R3HDM1-213ENST00000463230 CCDC146Q8IYE0 955 aa17.17■□□□□ 0.34
R3HDM1-213ENST00000463230 ARHGEF1Q92888 912 aaKnown RBP17.17■□□□□ 0.34
R3HDM1-213ENST00000463230 LAMB4A4D0S4 1761 aa17.16■□□□□ 0.34
R3HDM1-213ENST00000463230 SNRPA1P09661 255 aaKnown RBP17.16■□□□□ 0.34
R3HDM1-213ENST00000463230 NLGN1Q8N2Q7 840 aa17.16■□□□□ 0.34
R3HDM1-213ENST00000463230 A0A087WZG4 1122 aa17.15■□□□□ 0.34
R3HDM1-213ENST00000463230 KCNQ3O43525 872 aa17.15■□□□□ 0.34
R3HDM1-213ENST00000463230 MRS2Q9HD23 443 aa17.15■□□□□ 0.34
R3HDM1-213ENST00000463230 USP42Q9H9J4 1324 aaKnown RBP17.14■□□□□ 0.33
R3HDM1-213ENST00000463230 COL15A1P39059 1388 aa17.14■□□□□ 0.33
R3HDM1-213ENST00000463230 ZBTB1Q9Y2K1 713 aa17.13■□□□□ 0.33
R3HDM1-213ENST00000463230 MSL1Q68DK7 614 aa17.13■□□□□ 0.33
R3HDM1-213ENST00000463230 FHDC1Q9C0D6 1143 aaPredicted RBP17.13■□□□□ 0.33
R3HDM1-213ENST00000463230 IL6STP40189 918 aaPredicted RBP17.12■□□□□ 0.33
R3HDM1-213ENST00000463230 CALD1Q05682 793 aaKnown RBP17.12■□□□□ 0.33
R3HDM1-213ENST00000463230 THUMPD2Q9BTF0 503 aaKnown RBP17.12■□□□□ 0.33
R3HDM1-213ENST00000463230 TRIM35Q9UPQ4 493 aa17.12■□□□□ 0.33
R3HDM1-213ENST00000463230 GYS1P13807 737 aa17.12■□□□□ 0.33
R3HDM1-213ENST00000463230 EIF5P55010 431 aaKnown RBP17.12■□□□□ 0.33
R3HDM1-213ENST00000463230 CCDC184Q52MB2 194 aa17.12■□□□□ 0.33
R3HDM1-213ENST00000463230 SMIM5Q71RC9 77 aa17.12■□□□□ 0.33
R3HDM1-213ENST00000463230 SYT17Q9BSW7 474 aa17.12■□□□□ 0.33
R3HDM1-213ENST00000463230 EIF4A1P60842 406 aaKnown RBP17.11■□□□□ 0.33
R3HDM1-213ENST00000463230 NARFQ9UHQ1 456 aa17.11■□□□□ 0.33
R3HDM1-213ENST00000463230 RRP7AQ9Y3A4 280 aaKnown RBP17.11■□□□□ 0.33
R3HDM1-213ENST00000463230 CD2APQ9Y5K6 639 aa17.11■□□□□ 0.33
R3HDM1-213ENST00000463230 ZPR1O75312 459 aa17.11■□□□□ 0.33
R3HDM1-213ENST00000463230 CNKSR2Q8WXI2 1034 aa17.11■□□□□ 0.33
R3HDM1-213ENST00000463230 TSPYL4Q9UJ04 414 aa17.11■□□□□ 0.33
R3HDM1-213ENST00000463230 SCN7AQ01118 1682 aa17.1■□□□□ 0.33
R3HDM1-213ENST00000463230 DCAF8L1A6NGE4 600 aa17.09■□□□□ 0.33
R3HDM1-213ENST00000463230 APAF1O14727 1248 aa17.09■□□□□ 0.33
R3HDM1-213ENST00000463230 RGL2O15211 777 aa17.09■□□□□ 0.33
R3HDM1-213ENST00000463230 GIGYF1O75420 1035 aaPredicted RBP17.09■□□□□ 0.33
R3HDM1-213ENST00000463230 CANXP27824 592 aaKnown RBP17.09■□□□□ 0.33
R3HDM1-213ENST00000463230 NEUROD2Q15784 382 aa17.09■□□□□ 0.33
R3HDM1-213ENST00000463230 MIS18AQ9NYP9 233 aa17.09■□□□□ 0.33
R3HDM1-213ENST00000463230 ERBB4Q15303 1308 aa17.08■□□□□ 0.33
R3HDM1-213ENST00000463230 KIF13BQ9NQT8 1826 aa17.08■□□□□ 0.33
R3HDM1-213ENST00000463230 CHL1O00533 1208 aa17.08■□□□□ 0.33
R3HDM1-213ENST00000463230 MMP10P09238 476 aa17.08■□□□□ 0.33
R3HDM1-213ENST00000463230 NPM2Q86SE8 214 aaKnown RBP17.08■□□□□ 0.33
R3HDM1-213ENST00000463230 USP16Q9Y5T5 823 aa17.08■□□□□ 0.33
R3HDM1-213ENST00000463230 CCDC27Q2M243 656 aa17.08■□□□□ 0.32
R3HDM1-213ENST00000463230 BCORQ6W2J9 1755 aa17.07■□□□□ 0.32
R3HDM1-213ENST00000463230 NGEFQ8N5V2 710 aa17.06■□□□□ 0.32
R3HDM1-213ENST00000463230 SRP68Q9UHB9 627 aaKnown RBP17.06■□□□□ 0.32
R3HDM1-213ENST00000463230 PARP3Q9Y6F1 533 aa17.06■□□□□ 0.32
R3HDM1-213ENST00000463230 A1BGP04217 495 aa17.06■□□□□ 0.32
R3HDM1-213ENST00000463230 CFAP44Q96MT7 982 aa17.06■□□□□ 0.32
R3HDM1-213ENST00000463230 USPL1Q5W0Q7 1092 aa17.05■□□□□ 0.32
R3HDM1-213ENST00000463230 C10orf71Q711Q0 1435 aa17.05■□□□□ 0.32
R3HDM1-213ENST00000463230 IFT57Q9NWB7 429 aa17.05■□□□□ 0.32
R3HDM1-213ENST00000463230 PRAMEF22A3QJZ6 481 aa17.04■□□□□ 0.32
R3HDM1-213ENST00000463230 HOXB7P09629 217 aa17.04■□□□□ 0.32
R3HDM1-213ENST00000463230 TM4SF1P30408 202 aa17.04■□□□□ 0.32
R3HDM1-213ENST00000463230 FKBP8Q14318 412 aa17.04■□□□□ 0.32
R3HDM1-213ENST00000463230 ZNF853P0CG23 659 aa17.04■□□□□ 0.32
R3HDM1-213ENST00000463230 GNAI1P63096 354 aa17.04■□□□□ 0.32
R3HDM1-213ENST00000463230 FOXD4L1Q9NU39 408 aa17.04■□□□□ 0.32
R3HDM1-213ENST00000463230 NRXN2Q9P2S2 1712 aa17.03■□□□□ 0.32
R3HDM1-213ENST00000463230 KLHL34Q8N239 644 aa17.02■□□□□ 0.32
R3HDM1-213ENST00000463230 NBPF26B4DH59 902 aa17.02■□□□□ 0.32
R3HDM1-213ENST00000463230 NBPF10Q6P3W6 841 aaKnown RBP17.02■□□□□ 0.32
R3HDM1-213ENST00000463230 CLEC4GQ6UXB4 293 aa17.02■□□□□ 0.32
R3HDM1-213ENST00000463230 DZIP3Q86Y13 1208 aaKnown RBP17.02■□□□□ 0.32
R3HDM1-213ENST00000463230 NBPF15Q8N660 670 aa17.02■□□□□ 0.32
R3HDM1-213ENST00000463230 BCL2L12Q9HB09 334 aa17.02■□□□□ 0.32
R3HDM1-213ENST00000463230 IL16Q14005 1332 aa17.02■□□□□ 0.31
R3HDM1-213ENST00000463230 CCER2I3L3R5 266 aa17.01■□□□□ 0.31
R3HDM1-213ENST00000463230 CAMTA2O94983 1202 aa17.01■□□□□ 0.31
R3HDM1-213ENST00000463230 POLRMTO00411 1230 aaKnown RBP17.01■□□□□ 0.31
R3HDM1-213ENST00000463230 TGFB2P61812 414 aa17.01■□□□□ 0.31
R3HDM1-213ENST00000463230 ZNF652Q9Y2D9 606 aa17.01■□□□□ 0.31
R3HDM1-213ENST00000463230 DDR1Q08345 913 aa17■□□□□ 0.31
R3HDM1-213ENST00000463230 NFIXQ14938 502 aa17■□□□□ 0.31
R3HDM1-213ENST00000463230 CHMP4AQ9BY43 222 aa17■□□□□ 0.31
R3HDM1-213ENST00000463230 SRCAPQ6ZRS2 3230 aa17■□□□□ 0.31
R3HDM1-213ENST00000463230 NLGN2Q8NFZ4 835 aa17■□□□□ 0.31
R3HDM1-213ENST00000463230 TBC1D2BQ9UPU7 963 aa17■□□□□ 0.31
R3HDM1-213ENST00000463230 ZNF330Q9Y3S2 320 aaPredicted RBP17■□□□□ 0.31
R3HDM1-213ENST00000463230 LAS1LQ9Y4W2 734 aaKnown RBP17■□□□□ 0.31
R3HDM1-213ENST00000463230 KIAA1551Q9HCM1 1747 aa16.99■□□□□ 0.31
R3HDM1-213ENST00000463230 MBIPQ9NS73 344 aa16.99■□□□□ 0.31
R3HDM1-213ENST00000463230 AFDNP55196 1824 aaKnown RBP16.99■□□□□ 0.31
R3HDM1-213ENST00000463230 WWC1Q8IX03 1113 aa16.98■□□□□ 0.31
R3HDM1-213ENST00000463230 CARMIL3Q8ND23 1372 aa16.98■□□□□ 0.31
R3HDM1-213ENST00000463230 ERVV-1B6SEH8 477 aa16.98■□□□□ 0.31
R3HDM1-213ENST00000463230 PXDNLA1KZ92 1463 aa16.97■□□□□ 0.31
R3HDM1-213ENST00000463230 WDR63Q8IWG1 891 aa16.97■□□□□ 0.31
R3HDM1-213ENST00000463230 KIF6Q6ZMV9 814 aa16.96■□□□□ 0.31
R3HDM1-213ENST00000463230 FAM9BQ8IZU0 186 aa16.96■□□□□ 0.31
R3HDM1-213ENST00000463230 SERPINB2P05120 415 aa16.96■□□□□ 0.3
R3HDM1-213ENST00000463230 TBC1D9BQ66K14 1250 aa16.96■□□□□ 0.3
R3HDM1-213ENST00000463230 PDZRN3Q9UPQ7 1066 aa16.96■□□□□ 0.3
R3HDM1-213ENST00000463230 GRIN3BO60391 1043 aa16.95■□□□□ 0.3
R3HDM1-213ENST00000463230 PIP4K2AP48426 406 aaPredicted RBP16.95■□□□□ 0.3
R3HDM1-213ENST00000463230 MAP3K15Q6ZN16 1313 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms