RNA–Protein interactions for RNA: ENST00000462899.1

SMC3-202, Transcript of structural maintenance of chromosomes 3, humanhuman

TSL 5

Gene SMC3, Length 777 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC3-202ENST00000462899 ATP6V1AP38606 617 aa10.87□□□□□ -0.67
SMC3-202ENST00000462899 C9orf131Q5VYM1 1079 aa10.87□□□□□ -0.67
SMC3-202ENST00000462899 CNTNAP4Q9C0A0 1308 aa10.86□□□□□ -0.67
SMC3-202ENST00000462899 PHKG2P15735 406 aa10.86□□□□□ -0.67
SMC3-202ENST00000462899 ARHGAP27Q6ZUM4 889 aa10.86□□□□□ -0.67
SMC3-202ENST00000462899 NLGN1Q8N2Q7 840 aa10.86□□□□□ -0.67
SMC3-202ENST00000462899 TMOD3Q9NYL9 352 aa10.86□□□□□ -0.67
SMC3-202ENST00000462899 EMILIN1Q9Y6C2 1016 aa10.86□□□□□ -0.67
SMC3-202ENST00000462899 SCN11AQ9UI33 1791 aa10.85□□□□□ -0.67
SMC3-202ENST00000462899 FCHSD2O94868 740 aa10.85□□□□□ -0.67
SMC3-202ENST00000462899 TMF1P82094 1093 aa10.85□□□□□ -0.67
SMC3-202ENST00000462899 RC3H1Q5TC82 1133 aaKnown RBP10.85□□□□□ -0.67
SMC3-202ENST00000462899 TNS4Q8IZW8 715 aa10.85□□□□□ -0.67
SMC3-202ENST00000462899 ARHGEF1Q92888 912 aaKnown RBP10.85□□□□□ -0.67
SMC3-202ENST00000462899 CCDC87Q9NVE4 849 aa10.85□□□□□ -0.67
SMC3-202ENST00000462899 TRAPPC3LQ5T215 181 aa10.84□□□□□ -0.67
SMC3-202ENST00000462899 SPG7Q9UQ90 795 aa10.84□□□□□ -0.67
SMC3-202ENST00000462899 RTCBQ9Y3I0 505 aaKnown RBP10.84□□□□□ -0.67
SMC3-202ENST00000462899 FER1L6Q2WGJ9 1857 aa10.84□□□□□ -0.67
SMC3-202ENST00000462899 WASHC2AQ641Q2 1341 aa10.84□□□□□ -0.67
SMC3-202ENST00000462899 KDM2BQ8NHM5 1336 aa10.84□□□□□ -0.67
SMC3-202ENST00000462899 ZC3H4Q9UPT8 1303 aaKnown RBP10.84□□□□□ -0.67
SMC3-202ENST00000462899 ANKRD31Q8N7Z5 1873 aa10.83□□□□□ -0.68
SMC3-202ENST00000462899 RPS6KA4O75676 772 aa10.83□□□□□ -0.68
SMC3-202ENST00000462899 DCAF8Q5TAQ9 597 aa10.83□□□□□ -0.68
SMC3-202ENST00000462899 IFNL2Q8IZJ0 200 aa10.83□□□□□ -0.68
SMC3-202ENST00000462899 EYA1Q99502 592 aa10.83□□□□□ -0.68
SMC3-202ENST00000462899 SLC24A1O60721 1099 aa10.82□□□□□ -0.68
SMC3-202ENST00000462899 DDR1Q08345 913 aa10.82□□□□□ -0.68
SMC3-202ENST00000462899 C16orf71Q8IYS4 520 aaPredicted RBP10.82□□□□□ -0.68
SMC3-202ENST00000462899 SMC1BQ8NDV3 1235 aa10.82□□□□□ -0.68
SMC3-202ENST00000462899 FAM212AQ96EL1 285 aa10.82□□□□□ -0.68
SMC3-202ENST00000462899 CARD14Q9BXL6 1004 aa10.82□□□□□ -0.68
SMC3-202ENST00000462899 RRAGCQ9HB90 399 aa10.82□□□□□ -0.68
SMC3-202ENST00000462899 RNF181Q9P0P0 153 aa10.82□□□□□ -0.68
SMC3-202ENST00000462899 PIM2Q9P1W9 311 aa10.82□□□□□ -0.68
SMC3-202ENST00000462899 HSPA1AP0DMV8 641 aaKnown RBP10.81□□□□□ -0.68
SMC3-202ENST00000462899 HSPA1BP0DMV9 641 aaKnown RBP10.81□□□□□ -0.68
SMC3-202ENST00000462899 CIZ1Q9ULV3 898 aaPredicted RBP10.81□□□□□ -0.68
SMC3-202ENST00000462899 PARP3Q9Y6F1 533 aa10.81□□□□□ -0.68
SMC3-202ENST00000462899 USP42Q9H9J4 1324 aaKnown RBP10.81□□□□□ -0.68
SMC3-202ENST00000462899 COL11A2P13942 1736 aaPredicted RBP10.81□□□□□ -0.68
SMC3-202ENST00000462899 ARFGEF2Q9Y6D5 1785 aa10.8□□□□□ -0.68
SMC3-202ENST00000462899 ERVV-2B6SEH9 535 aa10.8□□□□□ -0.68
SMC3-202ENST00000462899 DALRD3Q5D0E6 543 aaKnown RBP10.8□□□□□ -0.68
SMC3-202ENST00000462899 PHF12Q96QT6 1004 aa10.8□□□□□ -0.68
SMC3-202ENST00000462899 UBR2Q8IWV8 1755 aa10.8□□□□□ -0.68
SMC3-202ENST00000462899 POLRMTO00411 1230 aaKnown RBP10.79□□□□□ -0.68
SMC3-202ENST00000462899 RFC4P35249 363 aa10.79□□□□□ -0.68
SMC3-202ENST00000462899 POTECB2RU33 542 aa10.78□□□□□ -0.68
SMC3-202ENST00000462899 TM4SF1P30408 202 aa10.78□□□□□ -0.68
SMC3-202ENST00000462899 CHRNA5P30532 468 aa10.78□□□□□ -0.68
SMC3-202ENST00000462899 RASSF7Q02833 373 aa10.78□□□□□ -0.68
SMC3-202ENST00000462899 SRP68Q9UHB9 627 aaKnown RBP10.78□□□□□ -0.68
SMC3-202ENST00000462899 CACNA1SQ13698 1873 aa10.78□□□□□ -0.68
SMC3-202ENST00000462899 SCN7AQ01118 1682 aa10.77□□□□□ -0.69
SMC3-202ENST00000462899 MRC1P22897 1456 aa10.77□□□□□ -0.69
SMC3-202ENST00000462899 GLTPD2A6NH11 291 aa10.77□□□□□ -0.69
SMC3-202ENST00000462899 CRKLP46109 303 aaKnown RBP10.77□□□□□ -0.69
SMC3-202ENST00000462899 EIF4A2Q14240 407 aaKnown RBP10.77□□□□□ -0.69
SMC3-202ENST00000462899 POLKQ9UBT6 870 aa10.77□□□□□ -0.69
SMC3-202ENST00000462899 ADAMTSL1Q8N6G6 1762 aa10.76□□□□□ -0.69
SMC3-202ENST00000462899 SLC34A2O95436 690 aa10.76□□□□□ -0.69
SMC3-202ENST00000462899 SCN4AP35499 1836 aa10.75□□□□□ -0.69
SMC3-202ENST00000462899 VEGFAP15692 232 aaPredicted RBP10.75□□□□□ -0.69
SMC3-202ENST00000462899 LMNB1P20700 586 aa10.75□□□□□ -0.69
SMC3-202ENST00000462899 INTS5Q6P9B9 1019 aaKnown RBP10.75□□□□□ -0.69
SMC3-202ENST00000462899 ZNF579Q8NAF0 562 aaKnown RBP10.75□□□□□ -0.69
SMC3-202ENST00000462899 NFKBIEO00221 500 aa10.74□□□□□ -0.69
SMC3-202ENST00000462899 HSP90AB1P08238 724 aaKnown RBP10.74□□□□□ -0.69
SMC3-202ENST00000462899 PYGBP11216 843 aa10.74□□□□□ -0.69
SMC3-202ENST00000462899 SOS1Q07889 1333 aaPredicted RBP10.74□□□□□ -0.69
SMC3-202ENST00000462899 CARMIL3Q8ND23 1372 aa10.74□□□□□ -0.69
SMC3-202ENST00000462899 TNRC18O15417 2968 aaPredicted RBP10.74□□□□□ -0.69
SMC3-202ENST00000462899 THSD7BQ9C0I4 1608 aa10.73□□□□□ -0.69
SMC3-202ENST00000462899 PPM1GO15355 546 aaPredicted RBP10.73□□□□□ -0.69
SMC3-202ENST00000462899 GSE1Q14687 1217 aa10.73□□□□□ -0.69
SMC3-202ENST00000462899 SP7Q8TDD2 431 aaPredicted RBP10.73□□□□□ -0.69
SMC3-202ENST00000462899 SIPA1L3O60292 1781 aaPredicted RBP10.72□□□□□ -0.69
SMC3-202ENST00000462899 BCORQ6W2J9 1755 aa10.72□□□□□ -0.69
SMC3-202ENST00000462899 SLX4Q8IY92 1834 aa10.72□□□□□ -0.69
SMC3-202ENST00000462899 BCL2L12Q9HB09 334 aa10.72□□□□□ -0.69
SMC3-202ENST00000462899 PTCD1O75127 700 aaKnown RBP10.71□□□□□ -0.69
SMC3-202ENST00000462899 COL15A1P39059 1388 aa10.71□□□□□ -0.69
SMC3-202ENST00000462899 CNTNAP1P78357 1384 aa10.71□□□□□ -0.69
SMC3-202ENST00000462899 NFIXQ14938 502 aa10.71□□□□□ -0.69
SMC3-202ENST00000462899 CDCA8Q53HL2 280 aa10.71□□□□□ -0.69
SMC3-202ENST00000462899 USPL1Q5W0Q7 1092 aa10.71□□□□□ -0.69
SMC3-202ENST00000462899 PASKQ96RG2 1323 aa10.7□□□□□ -0.7
SMC3-202ENST00000462899 FOXN1O15353 648 aa10.7□□□□□ -0.7
SMC3-202ENST00000462899 CABP4P57796 275 aa10.7□□□□□ -0.7
SMC3-202ENST00000462899 PLEKHO1Q53GL0 409 aaPredicted RBP10.7□□□□□ -0.7
SMC3-202ENST00000462899 ZNF530Q6P9A1 599 aaPredicted RBP10.7□□□□□ -0.7
SMC3-202ENST00000462899 PRDM10Q9NQV6 1147 aa10.7□□□□□ -0.7
SMC3-202ENST00000462899 POTEIP0CG38 1075 aa10.69□□□□□ -0.7
SMC3-202ENST00000462899 POTEJP0CG39 1038 aa10.69□□□□□ -0.7
SMC3-202ENST00000462899 AMOTQ4VCS5 1084 aa10.69□□□□□ -0.7
SMC3-202ENST00000462899 AEBP1Q8IUX7 1158 aa10.69□□□□□ -0.7
SMC3-202ENST00000462899 DNAJC10Q8IXB1 793 aa10.69□□□□□ -0.7
SMC3-202ENST00000462899 TTLL6Q8N841 843 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms