RNA–Protein interactions for RNA: ENST00000462658.1

UBE4B-204, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-204ENST00000462658 ARXQ96QS3 562 aa11.43□□□□□ -0.58
UBE4B-204ENST00000462658 ZNF358Q9NW07 568 aa11.43□□□□□ -0.58
UBE4B-204ENST00000462658 CLIP1P30622 1438 aa11.43□□□□□ -0.58
UBE4B-204ENST00000462658 SHROOM2Q13796 1616 aa11.42□□□□□ -0.58
UBE4B-204ENST00000462658 XAGE2Q96GT9 111 aa11.42□□□□□ -0.58
UBE4B-204ENST00000462658 POLMQ9NP87 494 aaPredicted RBP11.42□□□□□ -0.58
UBE4B-204ENST00000462658 ESCO1Q5FWF5 840 aa11.41□□□□□ -0.58
UBE4B-204ENST00000462658 STK32AQ8WU08 396 aa11.41□□□□□ -0.58
UBE4B-204ENST00000462658 NLRP3Q96P20 1036 aa11.41□□□□□ -0.58
UBE4B-204ENST00000462658 ESYT1Q9BSJ8 1104 aa11.41□□□□□ -0.58
UBE4B-204ENST00000462658 LGR5O75473 907 aa11.4□□□□□ -0.58
UBE4B-204ENST00000462658 GMPR2Q9P2T1 348 aaKnown RBP11.4□□□□□ -0.58
UBE4B-204ENST00000462658 RBM19Q9Y4C8 960 aaKnown RBP11.4□□□□□ -0.58
UBE4B-204ENST00000462658 HRH3Q9Y5N1 445 aa11.4□□□□□ -0.58
UBE4B-204ENST00000462658 ACIN1Q9UKV3 1341 aaKnown RBP11.39□□□□□ -0.59
UBE4B-204ENST00000462658 SEC13P55735 322 aa11.39□□□□□ -0.59
UBE4B-204ENST00000462658 CENPCQ03188 943 aa11.39□□□□□ -0.59
UBE4B-204ENST00000462658 FOXD4L5Q5VV16 416 aaPredicted RBP11.39□□□□□ -0.59
UBE4B-204ENST00000462658 FAM200AQ8TCP9 573 aa11.39□□□□□ -0.59
UBE4B-204ENST00000462658 FIGNL2A6NMB9 653 aa11.38□□□□□ -0.59
UBE4B-204ENST00000462658 WASLO00401 505 aaPredicted RBP11.38□□□□□ -0.59
UBE4B-204ENST00000462658 ELOAQ14241 798 aaKnown RBP11.38□□□□□ -0.59
UBE4B-204ENST00000462658 TSEN2Q8NCE0 465 aaKnown RBP11.38□□□□□ -0.59
UBE4B-204ENST00000462658 SOS2Q07890 1332 aaPredicted RBP11.37□□□□□ -0.59
UBE4B-204ENST00000462658 CARNS1A5YM72 827 aa11.37□□□□□ -0.59
UBE4B-204ENST00000462658 TTLL8A6PVC2 850 aa11.37□□□□□ -0.59
UBE4B-204ENST00000462658 TLR1Q15399 786 aa11.37□□□□□ -0.59
UBE4B-204ENST00000462658 TMEM164Q5U3C3 297 aa11.37□□□□□ -0.59
UBE4B-204ENST00000462658 TNS4Q8IZW8 715 aa11.37□□□□□ -0.59
UBE4B-204ENST00000462658 SOBPA7XYQ1 873 aa11.36□□□□□ -0.59
UBE4B-204ENST00000462658 CYB5RLQ6IPT4 315 aa11.36□□□□□ -0.59
UBE4B-204ENST00000462658 SLC4A9Q96Q91 983 aa11.36□□□□□ -0.59
UBE4B-204ENST00000462658 FHDC1Q9C0D6 1143 aaPredicted RBP11.36□□□□□ -0.59
UBE4B-204ENST00000462658 POTECB2RU33 542 aa11.35□□□□□ -0.59
UBE4B-204ENST00000462658 BACH1O14867 736 aa11.35□□□□□ -0.59
UBE4B-204ENST00000462658 RNF144AP50876 292 aaPredicted RBP11.35□□□□□ -0.59
UBE4B-204ENST00000462658 SMTNP53814 917 aa11.35□□□□□ -0.59
UBE4B-204ENST00000462658 SLC27A3Q5K4L6 730 aa11.35□□□□□ -0.59
UBE4B-204ENST00000462658 RNF217Q8TC41 542 aa11.35□□□□□ -0.59
UBE4B-204ENST00000462658 RETREG2Q8NC44 543 aa11.34□□□□□ -0.59
UBE4B-204ENST00000462658 HINFPQ9BQA5 517 aa11.34□□□□□ -0.59
UBE4B-204ENST00000462658 GRIP2Q9C0E4 1043 aa11.34□□□□□ -0.59
UBE4B-204ENST00000462658 DNMT3LQ9UJW3 386 aa11.34□□□□□ -0.59
UBE4B-204ENST00000462658 USP3Q9Y6I4 520 aa11.34□□□□□ -0.59
UBE4B-204ENST00000462658 A6NJY4 79 aa11.33□□□□□ -0.6
UBE4B-204ENST00000462658 CSB-PGBD3P0DP91 1061 aa11.33□□□□□ -0.6
UBE4B-204ENST00000462658 EPHA4P54764 986 aa11.33□□□□□ -0.6
UBE4B-204ENST00000462658 TBCELQ5QJ74 424 aa11.33□□□□□ -0.6
UBE4B-204ENST00000462658 PRICKLE2Q7Z3G6 844 aa11.33□□□□□ -0.6
UBE4B-204ENST00000462658 ZSCAN10Q96SZ4 725 aaPredicted RBP11.33□□□□□ -0.6
UBE4B-204ENST00000462658 M0R2N6 131 aa11.32□□□□□ -0.6
UBE4B-204ENST00000462658 SNRPBP14678 240 aaKnown RBP11.32□□□□□ -0.6
UBE4B-204ENST00000462658 GPC1P35052 558 aa11.32□□□□□ -0.6
UBE4B-204ENST00000462658 FAM69CQ0P6D2 419 aa11.32□□□□□ -0.6
UBE4B-204ENST00000462658 GAS2L2Q8NHY3 880 aa11.32□□□□□ -0.6
UBE4B-204ENST00000462658 TRIM47Q96LD4 638 aa11.32□□□□□ -0.6
UBE4B-204ENST00000462658 SENP2Q9HC62 589 aa11.32□□□□□ -0.6
UBE4B-204ENST00000462658 ARHGAP35Q9NRY4 1499 aa11.32□□□□□ -0.6
UBE4B-204ENST00000462658 CTTNBP2Q8WZ74 1663 aa11.31□□□□□ -0.6
UBE4B-204ENST00000462658 MTFR1Q15390 333 aa11.31□□□□□ -0.6
UBE4B-204ENST00000462658 VPS8Q8N3P4 1428 aa11.3□□□□□ -0.6
UBE4B-204ENST00000462658 TMEM88BA6NKF7 163 aa11.3□□□□□ -0.6
UBE4B-204ENST00000462658 MAN1A2O60476 641 aa11.3□□□□□ -0.6
UBE4B-204ENST00000462658 RHOQP17081 205 aa11.3□□□□□ -0.6
UBE4B-204ENST00000462658 POU4F2Q12837 409 aa11.3□□□□□ -0.6
UBE4B-204ENST00000462658 TMEM214Q6NUQ4 689 aaKnown RBP11.3□□□□□ -0.6
UBE4B-204ENST00000462658 LYSMD3Q7Z3D4 306 aa11.3□□□□□ -0.6
UBE4B-204ENST00000462658 TSPAN10Q9H1Z9 355 aaPredicted RBP11.3□□□□□ -0.6
UBE4B-204ENST00000462658 SCHIP1Q9P0W5 487 aaPredicted RBP11.3□□□□□ -0.6
UBE4B-204ENST00000462658 C11orf95C9JLR9 678 aaPredicted RBP11.29□□□□□ -0.6
UBE4B-204ENST00000462658 SLC9A9Q8IVB4 645 aa11.29□□□□□ -0.6
UBE4B-204ENST00000462658 KIFC2Q96AC6 838 aa11.29□□□□□ -0.6
UBE4B-204ENST00000462658 SLAIN2Q9P270 581 aa11.29□□□□□ -0.6
UBE4B-204ENST00000462658 IQSEC3Q9UPP2 1182 aaPredicted RBP11.29□□□□□ -0.6
UBE4B-204ENST00000462658 KIAA0586Q9BVV6 1533 aa11.29□□□□□ -0.6
UBE4B-204ENST00000462658 CDK2AP1O14519 115 aa11.28□□□□□ -0.6
UBE4B-204ENST00000462658 PHKA2P46019 1235 aa11.28□□□□□ -0.6
UBE4B-204ENST00000462658 FOXK2Q01167 660 aa11.28□□□□□ -0.6
UBE4B-204ENST00000462658 PPARGC1BQ86YN6 1023 aaKnown RBP11.28□□□□□ -0.6
UBE4B-204ENST00000462658 PRG4Q92954 1404 aaPredicted RBP11.27□□□□□ -0.6
UBE4B-204ENST00000462658 PRMT3O60678 531 aa11.27□□□□□ -0.61
UBE4B-204ENST00000462658 PRIMPOLQ96LW4 560 aa11.27□□□□□ -0.61
UBE4B-204ENST00000462658 IQGAP2Q13576 1575 aa11.27□□□□□ -0.61
UBE4B-204ENST00000462658 EFCAB5A4FU69 1503 aa11.26□□□□□ -0.61
UBE4B-204ENST00000462658 GTF2E1P29083 439 aaPredicted RBP11.26□□□□□ -0.61
UBE4B-204ENST00000462658 SWI5Q1ZZU3 235 aa11.26□□□□□ -0.61
UBE4B-204ENST00000462658 C4orf17Q53FE4 359 aa11.26□□□□□ -0.61
UBE4B-204ENST00000462658 SCG3Q8WXD2 468 aaKnown RBP11.26□□□□□ -0.61
UBE4B-204ENST00000462658 PARP3Q9Y6F1 533 aa11.26□□□□□ -0.61
UBE4B-204ENST00000462658 SPATA31C2B4DYI2 1134 aa11.25□□□□□ -0.61
UBE4B-204ENST00000462658 C21orf2O43822 256 aa11.25□□□□□ -0.61
UBE4B-204ENST00000462658 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.25□□□□□ -0.61
UBE4B-204ENST00000462658 GNASQ5JWF2 1037 aa11.25□□□□□ -0.61
UBE4B-204ENST00000462658 RHBDD1Q8TEB9 315 aa11.25□□□□□ -0.61
UBE4B-204ENST00000462658 CABP1Q9NZU7 370 aa11.25□□□□□ -0.61
UBE4B-204ENST00000462658 ATAD2Q6PL18 1390 aa11.25□□□□□ -0.61
UBE4B-204ENST00000462658 NBPF10Q6P3W6 841 aaKnown RBP11.24□□□□□ -0.61
UBE4B-204ENST00000462658 TAS1R3Q7RTX0 852 aa11.24□□□□□ -0.61
UBE4B-204ENST00000462658 ZNF295-AS1Q8N0V1 137 aa11.24□□□□□ -0.61
UBE4B-204ENST00000462658 NBPF15Q8N660 670 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms