RNA–Protein interactions for RNA: ENST00000462352.5

CPNE1-221, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 625 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-221ENST00000462352 GNPATO15228 680 aa15.3■□□□□ 0.04
CPNE1-221ENST00000462352 R3HDM1Q15032 1099 aaKnown RBP15.3■□□□□ 0.04
CPNE1-221ENST00000462352 INTS5Q6P9B9 1019 aaKnown RBP15.3■□□□□ 0.04
CPNE1-221ENST00000462352 CCDC87Q9NVE4 849 aa15.3■□□□□ 0.04
CPNE1-221ENST00000462352 TFCP2L1Q9NZI6 479 aa15.3■□□□□ 0.04
CPNE1-221ENST00000462352 PSDA5PKW4 1024 aaPredicted RBP15.29■□□□□ 0.04
CPNE1-221ENST00000462352 E9PSI1 815 aa15.29■□□□□ 0.04
CPNE1-221ENST00000462352 SLFN5Q08AF3 891 aa15.29■□□□□ 0.04
CPNE1-221ENST00000462352 CDCA7LQ96GN5 454 aa15.29■□□□□ 0.04
CPNE1-221ENST00000462352 ZBTB1Q9Y2K1 713 aa15.29■□□□□ 0.04
CPNE1-221ENST00000462352 MYH14Q7Z406 1995 aaKnown RBP15.29■□□□□ 0.04
CPNE1-221ENST00000462352 LAMB4A4D0S4 1761 aa15.29■□□□□ 0.04
CPNE1-221ENST00000462352 ZBED9Q6R2W3 1325 aa15.28■□□□□ 0.04
CPNE1-221ENST00000462352 PNPLA7Q6ZV29 1317 aa15.28■□□□□ 0.04
CPNE1-221ENST00000462352 ELL2O00472 640 aaPredicted RBP15.28■□□□□ 0.04
CPNE1-221ENST00000462352 RPS6KA4O75676 772 aa15.28■□□□□ 0.04
CPNE1-221ENST00000462352 A1BGP04217 495 aa15.28■□□□□ 0.04
CPNE1-221ENST00000462352 HOXB7P09629 217 aa15.28■□□□□ 0.04
CPNE1-221ENST00000462352 DUSP27Q5VZP5 1158 aa15.28■□□□□ 0.04
CPNE1-221ENST00000462352 AMIGO3Q86WK7 504 aa15.28■□□□□ 0.04
CPNE1-221ENST00000462352 C8orf58Q8NAV2 365 aa15.28■□□□□ 0.04
CPNE1-221ENST00000462352 UBR3Q6ZT12 1888 aa15.27■□□□□ 0.04
CPNE1-221ENST00000462352 TUBGCP6Q96RT7 1819 aa15.27■□□□□ 0.04
CPNE1-221ENST00000462352 PHF14O94880 888 aa15.27■□□□□ 0.04
CPNE1-221ENST00000462352 EIF2S2P20042 333 aaKnown RBP15.27■□□□□ 0.04
CPNE1-221ENST00000462352 SSFA2P28290 1259 aa15.27■□□□□ 0.04
CPNE1-221ENST00000462352 SMIM5Q71RC9 77 aa15.27■□□□□ 0.04
CPNE1-221ENST00000462352 RTCBQ9Y3I0 505 aaKnown RBP15.27■□□□□ 0.04
CPNE1-221ENST00000462352 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.26■□□□□ 0.03
CPNE1-221ENST00000462352 CANXP27824 592 aaKnown RBP15.26■□□□□ 0.03
CPNE1-221ENST00000462352 EXOSC9Q06265 439 aaKnown RBP15.26■□□□□ 0.03
CPNE1-221ENST00000462352 TSPYL6Q8N831 410 aa15.26■□□□□ 0.03
CPNE1-221ENST00000462352 QSER1Q2KHR3 1735 aa15.26■□□□□ 0.03
CPNE1-221ENST00000462352 SOS1Q07889 1333 aaPredicted RBP15.25■□□□□ 0.03
CPNE1-221ENST00000462352 PIP4K2AP48426 406 aaPredicted RBP15.25■□□□□ 0.03
CPNE1-221ENST00000462352 TWISTNBQ3B726 338 aaPredicted RBP15.25■□□□□ 0.03
CPNE1-221ENST00000462352 HDGFL1Q5TGJ6 251 aa15.25■□□□□ 0.03
CPNE1-221ENST00000462352 COL23A1Q86Y22 540 aaPredicted RBP15.25■□□□□ 0.03
CPNE1-221ENST00000462352 TRMT2AQ8IZ69 625 aaKnown RBP15.25■□□□□ 0.03
CPNE1-221ENST00000462352 FLAD1Q8NFF5 587 aa15.25■□□□□ 0.03
CPNE1-221ENST00000462352 NBPF26B4DH59 902 aa15.24■□□□□ 0.03
CPNE1-221ENST00000462352 ADRA2BP18089 450 aa15.24■□□□□ 0.03
CPNE1-221ENST00000462352 IL6STP40189 918 aaPredicted RBP15.24■□□□□ 0.03
CPNE1-221ENST00000462352 TRAPPC3LQ5T215 181 aa15.24■□□□□ 0.03
CPNE1-221ENST00000462352 NBPF10Q6P3W6 841 aaKnown RBP15.24■□□□□ 0.03
CPNE1-221ENST00000462352 NBPF15Q8N660 670 aa15.24■□□□□ 0.03
CPNE1-221ENST00000462352 NECTIN2Q92692 538 aa15.24■□□□□ 0.03
CPNE1-221ENST00000462352 PDGFDQ9GZP0 370 aaPredicted RBP15.24■□□□□ 0.03
CPNE1-221ENST00000462352 COL15A1P39059 1388 aa15.24■□□□□ 0.03
CPNE1-221ENST00000462352 ERBB4Q15303 1308 aa15.23■□□□□ 0.03
CPNE1-221ENST00000462352 MSH5O43196 834 aa15.23■□□□□ 0.03
CPNE1-221ENST00000462352 EIF5P55010 431 aaKnown RBP15.23■□□□□ 0.03
CPNE1-221ENST00000462352 ARHGEF1Q92888 912 aaKnown RBP15.23■□□□□ 0.03
CPNE1-221ENST00000462352 ZNF330Q9Y3S2 320 aaPredicted RBP15.23■□□□□ 0.03
CPNE1-221ENST00000462352 CASZ1Q86V15 1759 aa15.22■□□□□ 0.03
CPNE1-221ENST00000462352 MYL6BP14649 208 aa15.22■□□□□ 0.03
CPNE1-221ENST00000462352 PDIA6Q15084 440 aa15.22■□□□□ 0.03
CPNE1-221ENST00000462352 YTHDC1Q96MU7 727 aaKnown RBP15.22■□□□□ 0.03
CPNE1-221ENST00000462352 VAMP4O75379 141 aa15.21■□□□□ 0.03
CPNE1-221ENST00000462352 RFC4P35249 363 aa15.21■□□□□ 0.03
CPNE1-221ENST00000462352 PROSER3Q2NL68 480 aa15.21■□□□□ 0.03
CPNE1-221ENST00000462352 NPM2Q86SE8 214 aaKnown RBP15.21■□□□□ 0.03
CPNE1-221ENST00000462352 CHMP4AQ9BY43 222 aa15.21■□□□□ 0.03
CPNE1-221ENST00000462352 CHPF2Q9P2E5 772 aa15.21■□□□□ 0.03
CPNE1-221ENST00000462352 A0A087WZG4 1122 aa15.2■□□□□ 0.02
CPNE1-221ENST00000462352 ANXA1P04083 346 aa15.2■□□□□ 0.02
CPNE1-221ENST00000462352 CCDC30Q5VVM6 783 aa15.2■□□□□ 0.02
CPNE1-221ENST00000462352 LRP10Q7Z4F1 713 aa15.2■□□□□ 0.02
CPNE1-221ENST00000462352 DDX21Q9NR30 783 aaKnown RBP eCLIP15.2■□□□□ 0.02
CPNE1-221ENST00000462352 DBF4Q9UBU7 674 aaPredicted RBP15.2■□□□□ 0.02
CPNE1-221ENST00000462352 C4AP0C0L4 1744 aa15.2■□□□□ 0.02
CPNE1-221ENST00000462352 SLC16A10Q8TF71 515 aa15.19■□□□□ 0.02
CPNE1-221ENST00000462352 USP42Q9H9J4 1324 aaKnown RBP15.18■□□□□ 0.02
CPNE1-221ENST00000462352 TCERG1O14776 1098 aaKnown RBP15.18■□□□□ 0.02
CPNE1-221ENST00000462352 DZIP3Q86Y13 1208 aaKnown RBP15.18■□□□□ 0.02
CPNE1-221ENST00000462352 ARXQ96QS3 562 aa15.18■□□□□ 0.02
CPNE1-221ENST00000462352 SRP68Q9UHB9 627 aaKnown RBP15.18■□□□□ 0.02
CPNE1-221ENST00000462352 NARFQ9UHQ1 456 aa15.18■□□□□ 0.02
CPNE1-221ENST00000462352 TBC1D2BQ9UPU7 963 aa15.18■□□□□ 0.02
CPNE1-221ENST00000462352 ZPR1O75312 459 aa15.17■□□□□ 0.02
CPNE1-221ENST00000462352 ZBTB7AO95365 584 aa15.17■□□□□ 0.02
CPNE1-221ENST00000462352 USPL1Q5W0Q7 1092 aa15.17■□□□□ 0.02
CPNE1-221ENST00000462352 STK31Q9BXU1 1019 aa15.17■□□□□ 0.02
CPNE1-221ENST00000462352 HYPKQ9NX55 129 aa15.17■□□□□ 0.02
CPNE1-221ENST00000462352 CAMTA2O94983 1202 aa15.16■□□□□ 0.02
CPNE1-221ENST00000462352 GYS1P13807 737 aa15.16■□□□□ 0.02
CPNE1-221ENST00000462352 TTLL7Q6ZT98 887 aa15.16■□□□□ 0.02
CPNE1-221ENST00000462352 MTFR1LQ9H019 292 aa15.16■□□□□ 0.02
CPNE1-221ENST00000462352 SLC4A2P04920 1241 aa15.15■□□□□ 0.02
CPNE1-221ENST00000462352 AIMP1Q12904 312 aaKnown RBP15.15■□□□□ 0.02
CPNE1-221ENST00000462352 MSL1Q68DK7 614 aa15.15■□□□□ 0.02
CPNE1-221ENST00000462352 COPS6Q7L5N1 327 aa15.15■□□□□ 0.02
CPNE1-221ENST00000462352 XAGE3Q8WTP9 111 aa15.15■□□□□ 0.02
CPNE1-221ENST00000462352 PHAXQ9H814 394 aaKnown RBP15.15■□□□□ 0.02
CPNE1-221ENST00000462352 BCL2L12Q9HB09 334 aa15.15■□□□□ 0.02
CPNE1-221ENST00000462352 ATF5Q9Y2D1 282 aaPredicted RBP15.15■□□□□ 0.02
CPNE1-221ENST00000462352 SCN7AQ01118 1682 aa15.14■□□□□ 0.01
CPNE1-221ENST00000462352 CT47B1P0C2W7 299 aaPredicted RBP15.14■□□□□ 0.01
CPNE1-221ENST00000462352 KIF6Q6ZMV9 814 aa15.14■□□□□ 0.01
CPNE1-221ENST00000462352 NLGN1Q8N2Q7 840 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms