RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 CYLDQ9NQC7 956 aa11.53□□□□□ -0.56
USP54-208ENST00000461520 TBC1D2BQ9UPU7 963 aa11.53□□□□□ -0.56
USP54-208ENST00000461520 CNTLNQ9NXG0 1405 aa11.52□□□□□ -0.56
USP54-208ENST00000461520 GMPRP36959 345 aa11.52□□□□□ -0.57
USP54-208ENST00000461520 CTSOP43234 321 aaPredicted RBP11.52□□□□□ -0.57
USP54-208ENST00000461520 IRF7Q92985 503 aa11.52□□□□□ -0.57
USP54-208ENST00000461520 DISP3Q9P2K9 1392 aa11.52□□□□□ -0.57
USP54-208ENST00000461520 ATP7AQ04656 1500 aa11.51□□□□□ -0.57
USP54-208ENST00000461520 TIAM1Q13009 1591 aa11.51□□□□□ -0.57
USP54-208ENST00000461520 ADH1AP07327 375 aa11.51□□□□□ -0.57
USP54-208ENST00000461520 KDF1Q8NAX2 398 aaPredicted RBP11.51□□□□□ -0.57
USP54-208ENST00000461520 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.5□□□□□ -0.57
USP54-208ENST00000461520 INO80Q9ULG1 1556 aaPredicted RBP11.5□□□□□ -0.57
USP54-208ENST00000461520 PPFIA3O75145 1194 aa11.49□□□□□ -0.57
USP54-208ENST00000461520 ILDR2Q71H61 639 aa11.49□□□□□ -0.57
USP54-208ENST00000461520 POLMQ9NP87 494 aaPredicted RBP11.49□□□□□ -0.57
USP54-208ENST00000461520 PTPRTO14522 1441 aa11.49□□□□□ -0.57
USP54-208ENST00000461520 A2MP01023 1474 aa11.49□□□□□ -0.57
USP54-208ENST00000461520 MBD5Q9P267 1494 aa11.49□□□□□ -0.57
USP54-208ENST00000461520 PTGIRP43119 386 aa11.48□□□□□ -0.57
USP54-208ENST00000461520 ZNF330Q9Y3S2 320 aaPredicted RBP11.48□□□□□ -0.57
USP54-208ENST00000461520 ZNF644Q9H582 1327 aaPredicted RBP11.48□□□□□ -0.57
USP54-208ENST00000461520 PLXNC1O60486 1568 aa11.48□□□□□ -0.57
USP54-208ENST00000461520 SPATA31D1Q6ZQQ2 1576 aa11.47□□□□□ -0.57
USP54-208ENST00000461520 NCOA2Q15596 1464 aa11.47□□□□□ -0.57
USP54-208ENST00000461520 RTEL1-TNFRSF6BF6WH68 1400 aa11.47□□□□□ -0.57
USP54-208ENST00000461520 VPS8Q8N3P4 1428 aa11.47□□□□□ -0.57
USP54-208ENST00000461520 PTSQ03393 145 aa11.47□□□□□ -0.57
USP54-208ENST00000461520 LTBP4Q8N2S1 1624 aa11.46□□□□□ -0.57
USP54-208ENST00000461520 ZMYM3Q14202 1370 aa11.46□□□□□ -0.57
USP54-208ENST00000461520 LOC105371045A0A1W2PR82 267 aa11.46□□□□□ -0.57
USP54-208ENST00000461520 MCCD1P59942 119 aaPredicted RBP11.46□□□□□ -0.57
USP54-208ENST00000461520 SUPT6HQ7KZ85 1726 aaKnown RBP11.46□□□□□ -0.58
USP54-208ENST00000461520 MROH2AA6NES4 1674 aa11.46□□□□□ -0.58
USP54-208ENST00000461520 NPATQ14207 1427 aa11.45□□□□□ -0.58
USP54-208ENST00000461520 NCOA1Q15788 1441 aa11.45□□□□□ -0.58
USP54-208ENST00000461520 INSM1Q01101 510 aaPredicted RBP11.45□□□□□ -0.58
USP54-208ENST00000461520 IRF5Q13568 498 aa11.45□□□□□ -0.58
USP54-208ENST00000461520 RNF20Q5VTR2 975 aa11.45□□□□□ -0.58
USP54-208ENST00000461520 ADGBQ8N7X0 1667 aa11.44□□□□□ -0.58
USP54-208ENST00000461520 GGT6Q6P531 493 aa11.44□□□□□ -0.58
USP54-208ENST00000461520 RNF217Q8TC41 542 aa11.44□□□□□ -0.58
USP54-208ENST00000461520 GDPD2Q9HCC8 539 aa11.44□□□□□ -0.58
USP54-208ENST00000461520 PRM3Q9NNZ6 103 aa11.44□□□□□ -0.58
USP54-208ENST00000461520 PCDHB11Q9Y5F2 797 aa11.44□□□□□ -0.58
USP54-208ENST00000461520 CAMSAP1Q5T5Y3 1602 aa11.44□□□□□ -0.58
USP54-208ENST00000461520 CCDC141Q6ZP82 1450 aa11.44□□□□□ -0.58
USP54-208ENST00000461520 DHX29Q7Z478 1369 aaKnown RBP11.43□□□□□ -0.58
USP54-208ENST00000461520 CLTCQ00610 1675 aaKnown RBP11.43□□□□□ -0.58
USP54-208ENST00000461520 SCTRP47872 440 aa11.43□□□□□ -0.58
USP54-208ENST00000461520 FOXD4L5Q5VV16 416 aaPredicted RBP11.43□□□□□ -0.58
USP54-208ENST00000461520 CEP126Q9P2H0 1117 aa11.43□□□□□ -0.58
USP54-208ENST00000461520 CAMSAP2Q08AD1 1489 aa11.43□□□□□ -0.58
USP54-208ENST00000461520 LRRC9Q6ZRR7 1453 aa11.43□□□□□ -0.58
USP54-208ENST00000461520 MAP3K1Q13233 1512 aa11.42□□□□□ -0.58
USP54-208ENST00000461520 ERVK-9P63128 1117 aa11.42□□□□□ -0.58
USP54-208ENST00000461520 CC2D2BQ6DHV5 1058 aa11.42□□□□□ -0.58
USP54-208ENST00000461520 ZNF592Q92610 1267 aa11.42□□□□□ -0.58
USP54-208ENST00000461520 IQSEC2Q5JU85 1478 aa11.42□□□□□ -0.58
USP54-208ENST00000461520 ATP5J2-PTCD1G3V325 749 aa11.41□□□□□ -0.58
USP54-208ENST00000461520 VSIG8P0DPA2 414 aa11.41□□□□□ -0.58
USP54-208ENST00000461520 CCDC125Q86Z20 511 aa11.41□□□□□ -0.58
USP54-208ENST00000461520 CCDC155Q8N6L0 562 aa11.41□□□□□ -0.58
USP54-208ENST00000461520 MYO3AQ8NEV4 1616 aa11.41□□□□□ -0.58
USP54-208ENST00000461520 TSPY4P0CV99 314 aa11.4□□□□□ -0.58
USP54-208ENST00000461520 TSPY10P0CW01 314 aa11.4□□□□□ -0.58
USP54-208ENST00000461520 ABL2P42684 1182 aa11.4□□□□□ -0.58
USP54-208ENST00000461520 ZNF142P52746 1687 aaPredicted RBP11.4□□□□□ -0.59
USP54-208ENST00000461520 SLC35F4A4IF30 521 aa11.39□□□□□ -0.59
USP54-208ENST00000461520 VAC14Q08AM6 782 aa11.39□□□□□ -0.59
USP54-208ENST00000461520 ARHGEF5Q12774 1597 aa11.39□□□□□ -0.59
USP54-208ENST00000461520 MCM6Q14566 821 aa11.39□□□□□ -0.59
USP54-208ENST00000461520 PTPRKQ15262 1439 aa11.39□□□□□ -0.59
USP54-208ENST00000461520 TRIM52Q96A61 297 aa11.39□□□□□ -0.59
USP54-208ENST00000461520 A0A1W2PRU2 124 aa11.38□□□□□ -0.59
USP54-208ENST00000461520 MEN1O00255 615 aa11.38□□□□□ -0.59
USP54-208ENST00000461520 KIF3BO15066 747 aa11.38□□□□□ -0.59
USP54-208ENST00000461520 KANK4Q5T7N3 995 aaPredicted RBP11.38□□□□□ -0.59
USP54-208ENST00000461520 CCDC85AQ96PX6 553 aaPredicted RBP11.38□□□□□ -0.59
USP54-208ENST00000461520 CDCA7Q9BWT1 371 aaPredicted RBP11.38□□□□□ -0.59
USP54-208ENST00000461520 ZNF335Q9H4Z2 1342 aaPredicted RBP11.37□□□□□ -0.59
USP54-208ENST00000461520 CEP170BQ9Y4F5 1589 aaPredicted RBP11.37□□□□□ -0.59
USP54-208ENST00000461520 MIA2Q96PC5 1412 aa11.37□□□□□ -0.59
USP54-208ENST00000461520 FAM135AQ9P2D6 1515 aa11.37□□□□□ -0.59
USP54-208ENST00000461520 EIF4G2P78344 907 aaKnown RBP eCLIP11.37□□□□□ -0.59
USP54-208ENST00000461520 TSGA10IPQ3SY00 556 aa11.37□□□□□ -0.59
USP54-208ENST00000461520 GPR161Q8N6U8 529 aaKnown RBP11.37□□□□□ -0.59
USP54-208ENST00000461520 OSBPL3Q9H4L5 887 aa11.37□□□□□ -0.59
USP54-208ENST00000461520 LORP23490 312 aaPredicted RBP11.36□□□□□ -0.59
USP54-208ENST00000461520 RNF144AP50876 292 aaPredicted RBP11.36□□□□□ -0.59
USP54-208ENST00000461520 LYSMD3Q7Z3D4 306 aa11.36□□□□□ -0.59
USP54-208ENST00000461520 PRICKLE2Q7Z3G6 844 aa11.36□□□□□ -0.59
USP54-208ENST00000461520 STK17AQ9UEE5 414 aa11.36□□□□□ -0.59
USP54-208ENST00000461520 MYOM3Q5VTT5 1437 aa11.35□□□□□ -0.59
USP54-208ENST00000461520 SENP3-EIF4A1A0A087X0R7 540 aa11.35□□□□□ -0.59
USP54-208ENST00000461520 PLA2R1Q13018 1463 aa11.35□□□□□ -0.59
USP54-208ENST00000461520 KDM5DQ9BY66 1539 aa11.35□□□□□ -0.59
USP54-208ENST00000461520 MAST1Q9Y2H9 1570 aa11.34□□□□□ -0.59
USP54-208ENST00000461520 TCOF1Q13428 1488 aaKnown RBP11.34□□□□□ -0.59
USP54-208ENST00000461520 UBAP1LF5GYI3 381 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms