RNA–Protein interactions for RNA: ENST00000461409.1

HDAC9-220, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 728 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-220ENST00000461409 TMEM92Q6UXU6 159 aa11.95□□□□□ -0.5
HDAC9-220ENST00000461409 PALLDQ8WX93 1383 aa11.94□□□□□ -0.5
HDAC9-220ENST00000461409 MPRIPQ6WCQ1 1025 aa11.94□□□□□ -0.5
HDAC9-220ENST00000461409 SMARCC1Q92922 1105 aaPredicted RBP11.94□□□□□ -0.5
HDAC9-220ENST00000461409 POLKQ9UBT6 870 aa11.94□□□□□ -0.5
HDAC9-220ENST00000461409 PLEKHG2Q9H7P9 1386 aa11.93□□□□□ -0.5
HDAC9-220ENST00000461409 UTRNP46939 3433 aa11.93□□□□□ -0.5
HDAC9-220ENST00000461409 HSPA5P11021 654 aaKnown RBP11.93□□□□□ -0.5
HDAC9-220ENST00000461409 PKD1L3Q7Z443 1732 aa11.92□□□□□ -0.5
HDAC9-220ENST00000461409 TNNT2P45379 298 aaPredicted RBP11.92□□□□□ -0.5
HDAC9-220ENST00000461409 NKX1-1Q15270 411 aaPredicted RBP11.92□□□□□ -0.5
HDAC9-220ENST00000461409 AMER1Q5JTC6 1135 aaPredicted RBP11.92□□□□□ -0.5
HDAC9-220ENST00000461409 FLAD1Q8NFF5 587 aa11.92□□□□□ -0.5
HDAC9-220ENST00000461409 EYA1Q99502 592 aa11.92□□□□□ -0.5
HDAC9-220ENST00000461409 PANK3Q9H999 370 aa11.91□□□□□ -0.5
HDAC9-220ENST00000461409 EIF4A2Q14240 407 aaKnown RBP11.9□□□□□ -0.5
HDAC9-220ENST00000461409 PIGBQ92521 554 aa11.9□□□□□ -0.5
HDAC9-220ENST00000461409 TMOD3Q9NYL9 352 aa11.9□□□□□ -0.5
HDAC9-220ENST00000461409 TUBGCP6Q96RT7 1819 aa11.9□□□□□ -0.5
HDAC9-220ENST00000461409 COL24A1Q17RW2 1714 aa11.89□□□□□ -0.51
HDAC9-220ENST00000461409 PPP1R37O75864 691 aa11.89□□□□□ -0.51
HDAC9-220ENST00000461409 GPR162Q16538 588 aa11.89□□□□□ -0.51
HDAC9-220ENST00000461409 COL23A1Q86Y22 540 aaPredicted RBP11.89□□□□□ -0.51
HDAC9-220ENST00000461409 IFNL2Q8IZJ0 200 aa11.89□□□□□ -0.51
HDAC9-220ENST00000461409 AK7Q96M32 723 aa11.89□□□□□ -0.51
HDAC9-220ENST00000461409 C5P01031 1676 aa11.89□□□□□ -0.51
HDAC9-220ENST00000461409 MAP2P11137 1827 aaKnown RBP11.88□□□□□ -0.51
HDAC9-220ENST00000461409 FAM205CA6NFA0 338 aa11.88□□□□□ -0.51
HDAC9-220ENST00000461409 PHKG2P15735 406 aa11.88□□□□□ -0.51
HDAC9-220ENST00000461409 MORC1Q86VD1 984 aa11.88□□□□□ -0.51
HDAC9-220ENST00000461409 KNSTRNQ9Y448 316 aa11.88□□□□□ -0.51
HDAC9-220ENST00000461409 GOLGB1Q14789 3259 aaKnown RBP11.88□□□□□ -0.51
HDAC9-220ENST00000461409 TOGARAM1Q9Y4F4 1720 aa11.88□□□□□ -0.51
HDAC9-220ENST00000461409 IGSF1Q8N6C5 1336 aa11.87□□□□□ -0.51
HDAC9-220ENST00000461409 LOC102724428A0A0B4J2F2 783 aa11.87□□□□□ -0.51
HDAC9-220ENST00000461409 HSP90AB1P08238 724 aaKnown RBP11.87□□□□□ -0.51
HDAC9-220ENST00000461409 SIK1P57059 783 aa11.87□□□□□ -0.51
HDAC9-220ENST00000461409 HS3ST6Q96QI5 342 aa11.87□□□□□ -0.51
HDAC9-220ENST00000461409 RTN4Q9NQC3 1192 aaKnown RBP11.87□□□□□ -0.51
HDAC9-220ENST00000461409 MSL1Q68DK7 614 aa11.86□□□□□ -0.51
HDAC9-220ENST00000461409 ZNF784Q8NCA9 323 aaPredicted RBP11.86□□□□□ -0.51
HDAC9-220ENST00000461409 ITGB4P16144 1822 aa11.86□□□□□ -0.51
HDAC9-220ENST00000461409 C4BP0C0L5 1744 aa11.86□□□□□ -0.51
HDAC9-220ENST00000461409 ERVV-2B6SEH9 535 aa11.85□□□□□ -0.51
HDAC9-220ENST00000461409 HOXB3P14651 431 aaPredicted RBP11.85□□□□□ -0.51
HDAC9-220ENST00000461409 SSFA2P28290 1259 aa11.85□□□□□ -0.51
HDAC9-220ENST00000461409 AMOTQ4VCS5 1084 aa11.85□□□□□ -0.51
HDAC9-220ENST00000461409 PLEKHO1Q53GL0 409 aaPredicted RBP11.85□□□□□ -0.51
HDAC9-220ENST00000461409 DCAF5Q96JK2 942 aa11.85□□□□□ -0.51
HDAC9-220ENST00000461409 ASAP1Q9ULH1 1129 aa11.85□□□□□ -0.51
HDAC9-220ENST00000461409 TAF1LQ8IZX4 1826 aa11.84□□□□□ -0.51
HDAC9-220ENST00000461409 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.84□□□□□ -0.51
HDAC9-220ENST00000461409 NLGN2Q8NFZ4 835 aa11.84□□□□□ -0.51
HDAC9-220ENST00000461409 CD2APQ9Y5K6 639 aa11.84□□□□□ -0.51
HDAC9-220ENST00000461409 GRIN3BO60391 1043 aa11.83□□□□□ -0.52
HDAC9-220ENST00000461409 PHF14O94880 888 aa11.83□□□□□ -0.52
HDAC9-220ENST00000461409 ATP6V1AP38606 617 aa11.83□□□□□ -0.52
HDAC9-220ENST00000461409 C1orf141Q5JVX7 400 aa11.83□□□□□ -0.52
HDAC9-220ENST00000461409 ZNF530Q6P9A1 599 aaPredicted RBP11.83□□□□□ -0.52
HDAC9-220ENST00000461409 LINC00116Q8NCU8 138 aa11.83□□□□□ -0.52
HDAC9-220ENST00000461409 ATG3Q9NT62 314 aa11.83□□□□□ -0.52
HDAC9-220ENST00000461409 CHD4Q14839 1912 aa11.82□□□□□ -0.52
HDAC9-220ENST00000461409 GNPATO15228 680 aa11.82□□□□□ -0.52
HDAC9-220ENST00000461409 KIF7Q2M1P5 1343 aa11.82□□□□□ -0.52
HDAC9-220ENST00000461409 KIF3CO14782 793 aa11.81□□□□□ -0.52
HDAC9-220ENST00000461409 ITPK1Q13572 414 aa11.81□□□□□ -0.52
HDAC9-220ENST00000461409 AMIGO3Q86WK7 504 aa11.81□□□□□ -0.52
HDAC9-220ENST00000461409 ZNF710Q8N1W2 664 aa11.81□□□□□ -0.52
HDAC9-220ENST00000461409 KDRP35968 1356 aa11.8□□□□□ -0.52
HDAC9-220ENST00000461409 MTHFSP49914 203 aa11.8□□□□□ -0.52
HDAC9-220ENST00000461409 CABP4P57796 275 aa11.8□□□□□ -0.52
HDAC9-220ENST00000461409 SULT6B1Q6IMI4 303 aa11.8□□□□□ -0.52
HDAC9-220ENST00000461409 AEBP1Q8IUX7 1158 aa11.8□□□□□ -0.52
HDAC9-220ENST00000461409 UBR3Q6ZT12 1888 aa11.8□□□□□ -0.52
HDAC9-220ENST00000461409 KDM6AO15550 1401 aaPredicted RBP11.79□□□□□ -0.52
HDAC9-220ENST00000461409 YBX3P16989 372 aaKnown RBP eCLIP11.79□□□□□ -0.52
HDAC9-220ENST00000461409 IL13P35225 146 aa11.79□□□□□ -0.52
HDAC9-220ENST00000461409 RYDENQ9NUL5 291 aaKnown RBP11.79□□□□□ -0.52
HDAC9-220ENST00000461409 RTCBQ9Y3I0 505 aaKnown RBP11.79□□□□□ -0.52
HDAC9-220ENST00000461409 ZNF831Q5JPB2 1677 aa11.78□□□□□ -0.52
HDAC9-220ENST00000461409 TRAPPC3LQ5T215 181 aa11.78□□□□□ -0.52
HDAC9-220ENST00000461409 RC3H1Q5TC82 1133 aaKnown RBP11.78□□□□□ -0.52
HDAC9-220ENST00000461409 KRTAP3-3Q9BYR6 98 aa11.78□□□□□ -0.52
HDAC9-220ENST00000461409 KRTAP3-2Q9BYR7 98 aa11.78□□□□□ -0.52
HDAC9-220ENST00000461409 CNTNAP4Q9C0A0 1308 aa11.78□□□□□ -0.52
HDAC9-220ENST00000461409 POTEB3A0JP26 581 aa11.77□□□□□ -0.53
HDAC9-220ENST00000461409 DOK7Q18PE1 504 aa11.77□□□□□ -0.53
HDAC9-220ENST00000461409 POTEBQ6S5H4 581 aa11.77□□□□□ -0.53
HDAC9-220ENST00000461409 SMIM5Q71RC9 77 aa11.77□□□□□ -0.53
HDAC9-220ENST00000461409 C2orf72A6NCS6 295 aa11.76□□□□□ -0.53
HDAC9-220ENST00000461409 GTPBP6O43824 516 aaPredicted RBP11.76□□□□□ -0.53
HDAC9-220ENST00000461409 AKAP4Q5JQC9 854 aa11.76□□□□□ -0.53
HDAC9-220ENST00000461409 NLGN1Q8N2Q7 840 aa11.76□□□□□ -0.53
HDAC9-220ENST00000461409 NFATC2IPQ8NCF5 419 aa11.76□□□□□ -0.53
HDAC9-220ENST00000461409 SLC4A9Q96Q91 983 aa11.76□□□□□ -0.53
HDAC9-220ENST00000461409 PER1O15534 1290 aaPredicted RBP11.75□□□□□ -0.53
HDAC9-220ENST00000461409 PTCD1O75127 700 aaKnown RBP11.75□□□□□ -0.53
HDAC9-220ENST00000461409 RPS6KA4O75676 772 aa11.75□□□□□ -0.53
HDAC9-220ENST00000461409 MMP10P09238 476 aa11.75□□□□□ -0.53
HDAC9-220ENST00000461409 RFC4P35249 363 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms