RNA–Protein interactions for RNA: ENST00000457035.5

ATG4A-206, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 939 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-206ENST00000457035 STK32BQ9NY57 414 aa13.2□□□□□ -0.3
ATG4A-206ENST00000457035 TUBGCP6Q96RT7 1819 aa13.2□□□□□ -0.3
ATG4A-206ENST00000457035 CHD4Q14839 1912 aa13.19□□□□□ -0.3
ATG4A-206ENST00000457035 C5P01031 1676 aa13.19□□□□□ -0.3
ATG4A-206ENST00000457035 SENP3-EIF4A1A0A087X0R7 540 aa13.19□□□□□ -0.3
ATG4A-206ENST00000457035 YY1P25490 414 aa13.19□□□□□ -0.3
ATG4A-206ENST00000457035 HMGB2P26583 209 aaKnown RBP13.19□□□□□ -0.3
ATG4A-206ENST00000457035 ZNF827Q17R98 1081 aa13.19□□□□□ -0.3
ATG4A-206ENST00000457035 VSIG10Q8N0Z9 540 aa13.19□□□□□ -0.3
ATG4A-206ENST00000457035 LINC00116Q8NCU8 138 aa13.19□□□□□ -0.3
ATG4A-206ENST00000457035 ZNF496Q96IT1 587 aaPredicted RBP13.19□□□□□ -0.3
ATG4A-206ENST00000457035 KCPQ6ZWJ8 1503 aa13.18□□□□□ -0.3
ATG4A-206ENST00000457035 PRR29P0C7W0 189 aa13.18□□□□□ -0.3
ATG4A-206ENST00000457035 CCDC27Q2M243 656 aa13.18□□□□□ -0.3
ATG4A-206ENST00000457035 TTC5Q8N0Z6 440 aa13.18□□□□□ -0.3
ATG4A-206ENST00000457035 BABAM1Q9NWV8 329 aa13.18□□□□□ -0.3
ATG4A-206ENST00000457035 COL5A3P25940 1745 aaPredicted RBP13.17□□□□□ -0.3
ATG4A-206ENST00000457035 CHL1O00533 1208 aa13.17□□□□□ -0.3
ATG4A-206ENST00000457035 RC3H1Q5TC82 1133 aaKnown RBP13.17□□□□□ -0.3
ATG4A-206ENST00000457035 WWC1Q8IX03 1113 aa13.17□□□□□ -0.3
ATG4A-206ENST00000457035 DNAJC10Q8IXB1 793 aa13.17□□□□□ -0.3
ATG4A-206ENST00000457035 KDM3BQ7LBC6 1761 aa13.17□□□□□ -0.3
ATG4A-206ENST00000457035 C4BP0C0L5 1744 aa13.16□□□□□ -0.3
ATG4A-206ENST00000457035 TJP1Q07157 1748 aa13.16□□□□□ -0.3
ATG4A-206ENST00000457035 QSER1Q2KHR3 1735 aa13.16□□□□□ -0.3
ATG4A-206ENST00000457035 ZNF853P0CG23 659 aa13.16□□□□□ -0.3
ATG4A-206ENST00000457035 FMNL2Q96PY5 1086 aa13.16□□□□□ -0.3
ATG4A-206ENST00000457035 UBR3Q6ZT12 1888 aa13.16□□□□□ -0.3
ATG4A-206ENST00000457035 CICQ96RK0 1608 aaPredicted RBP13.16□□□□□ -0.3
ATG4A-206ENST00000457035 HEG1Q9ULI3 1381 aa13.16□□□□□ -0.3
ATG4A-206ENST00000457035 CYP19A1P11511 503 aaPredicted RBP13.15□□□□□ -0.3
ATG4A-206ENST00000457035 EIF4A1P60842 406 aaKnown RBP13.15□□□□□ -0.3
ATG4A-206ENST00000457035 CFAP44Q96MT7 982 aa13.15□□□□□ -0.3
ATG4A-206ENST00000457035 TFCP2L1Q9NZI6 479 aa13.15□□□□□ -0.3
ATG4A-206ENST00000457035 INTS5Q6P9B9 1019 aaKnown RBP13.14□□□□□ -0.31
ATG4A-206ENST00000457035 AMIGO3Q86WK7 504 aa13.14□□□□□ -0.31
ATG4A-206ENST00000457035 NGEFQ8N5V2 710 aa13.14□□□□□ -0.31
ATG4A-206ENST00000457035 TEX13AQ9BXU3 409 aaPredicted RBP13.14□□□□□ -0.31
ATG4A-206ENST00000457035 TSPYL4Q9UJ04 414 aa13.14□□□□□ -0.31
ATG4A-206ENST00000457035 SALL2Q9Y467 1007 aaPredicted RBP13.14□□□□□ -0.31
ATG4A-206ENST00000457035 USP16Q9Y5T5 823 aa13.14□□□□□ -0.31
ATG4A-206ENST00000457035 PNPLA7Q6ZV29 1317 aa13.13□□□□□ -0.31
ATG4A-206ENST00000457035 CNTNAP4Q9C0A0 1308 aa13.13□□□□□ -0.31
ATG4A-206ENST00000457035 PRAMEF22A3QJZ6 481 aa13.13□□□□□ -0.31
ATG4A-206ENST00000457035 GIGYF1O75420 1035 aaPredicted RBP13.13□□□□□ -0.31
ATG4A-206ENST00000457035 SNRPA1P09661 255 aaKnown RBP13.13□□□□□ -0.31
ATG4A-206ENST00000457035 PTGER2P43116 358 aa13.13□□□□□ -0.31
ATG4A-206ENST00000457035 CRKLP46109 303 aaKnown RBP13.13□□□□□ -0.31
ATG4A-206ENST00000457035 SMIM5Q71RC9 77 aa13.13□□□□□ -0.31
ATG4A-206ENST00000457035 AK7Q96M32 723 aa13.13□□□□□ -0.31
ATG4A-206ENST00000457035 LAS1LQ9Y4W2 734 aaKnown RBP13.13□□□□□ -0.31
ATG4A-206ENST00000457035 RPS6KA4O75676 772 aa13.12□□□□□ -0.31
ATG4A-206ENST00000457035 PRKAR2AP13861 404 aaKnown RBP13.12□□□□□ -0.31
ATG4A-206ENST00000457035 CALD1Q05682 793 aaKnown RBP13.12□□□□□ -0.31
ATG4A-206ENST00000457035 COL23A1Q86Y22 540 aaPredicted RBP13.12□□□□□ -0.31
ATG4A-206ENST00000457035 WDR63Q8IWG1 891 aa13.12□□□□□ -0.31
ATG4A-206ENST00000457035 IFT57Q9NWB7 429 aa13.12□□□□□ -0.31
ATG4A-206ENST00000457035 GNPATO15228 680 aa13.11□□□□□ -0.31
ATG4A-206ENST00000457035 STARD3NLO95772 234 aa13.11□□□□□ -0.31
ATG4A-206ENST00000457035 GNAI1P63096 354 aa13.11□□□□□ -0.31
ATG4A-206ENST00000457035 FLAD1Q8NFF5 587 aa13.11□□□□□ -0.31
ATG4A-206ENST00000457035 FHDC1Q9C0D6 1143 aaPredicted RBP13.11□□□□□ -0.31
ATG4A-206ENST00000457035 MTFR1LQ9H019 292 aa13.11□□□□□ -0.31
ATG4A-206ENST00000457035 MBIPQ9NS73 344 aa13.11□□□□□ -0.31
ATG4A-206ENST00000457035 CCDC87Q9NVE4 849 aa13.11□□□□□ -0.31
ATG4A-206ENST00000457035 IL16Q14005 1332 aa13.11□□□□□ -0.31
ATG4A-206ENST00000457035 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.1□□□□□ -0.31
ATG4A-206ENST00000457035 A1BGP04217 495 aa13.1□□□□□ -0.31
ATG4A-206ENST00000457035 SSFA2P28290 1259 aa13.1□□□□□ -0.31
ATG4A-206ENST00000457035 RTCBQ9Y3I0 505 aaKnown RBP13.1□□□□□ -0.31
ATG4A-206ENST00000457035 COL24A1Q17RW2 1714 aa13.1□□□□□ -0.31
ATG4A-206ENST00000457035 ZNF521Q96K83 1311 aa13.1□□□□□ -0.31
ATG4A-206ENST00000457035 KRT24Q2M2I5 525 aa13.09□□□□□ -0.31
ATG4A-206ENST00000457035 TRAPPC3LQ5T215 181 aa13.09□□□□□ -0.31
ATG4A-206ENST00000457035 SLC16A10Q8TF71 515 aa13.09□□□□□ -0.31
ATG4A-206ENST00000457035 ARHGEF1Q92888 912 aaKnown RBP13.09□□□□□ -0.31
ATG4A-206ENST00000457035 ZBTB1Q9Y2K1 713 aa13.09□□□□□ -0.31
ATG4A-206ENST00000457035 PHF14O94880 888 aa13.08□□□□□ -0.32
ATG4A-206ENST00000457035 CANXP27824 592 aaKnown RBP13.08□□□□□ -0.32
ATG4A-206ENST00000457035 EIF5P55010 431 aaKnown RBP13.08□□□□□ -0.32
ATG4A-206ENST00000457035 SYT17Q9BSW7 474 aa13.08□□□□□ -0.32
ATG4A-206ENST00000457035 SOS1Q07889 1333 aaPredicted RBP13.08□□□□□ -0.32
ATG4A-206ENST00000457035 NBPF26B4DH59 902 aa13.07□□□□□ -0.32
ATG4A-206ENST00000457035 NBPF10Q6P3W6 841 aaKnown RBP13.07□□□□□ -0.32
ATG4A-206ENST00000457035 KLHL34Q8N239 644 aa13.07□□□□□ -0.32
ATG4A-206ENST00000457035 NBPF15Q8N660 670 aa13.07□□□□□ -0.32
ATG4A-206ENST00000457035 ARXQ96QS3 562 aa13.07□□□□□ -0.32
ATG4A-206ENST00000457035 IL6STP40189 918 aaPredicted RBP13.06□□□□□ -0.32
ATG4A-206ENST00000457035 TSR2Q969E8 191 aaKnown RBP13.06□□□□□ -0.32
ATG4A-206ENST00000457035 SGIP1Q9BQI5 828 aa13.06□□□□□ -0.32
ATG4A-206ENST00000457035 LAMB4A4D0S4 1761 aa13.06□□□□□ -0.32
ATG4A-206ENST00000457035 PIP4K2AP48426 406 aaPredicted RBP13.05□□□□□ -0.32
ATG4A-206ENST00000457035 DUSP27Q5VZP5 1158 aa13.05□□□□□ -0.32
ATG4A-206ENST00000457035 C8orf58Q8NAV2 365 aa13.05□□□□□ -0.32
ATG4A-206ENST00000457035 C4AP0C0L4 1744 aa13.05□□□□□ -0.32
ATG4A-206ENST00000457035 HOXB7P09629 217 aa13.04□□□□□ -0.32
ATG4A-206ENST00000457035 EIF2S2P20042 333 aaKnown RBP13.04□□□□□ -0.32
ATG4A-206ENST00000457035 RFC4P35249 363 aa13.04□□□□□ -0.32
ATG4A-206ENST00000457035 PDIA6Q15084 440 aa13.04□□□□□ -0.32
ATG4A-206ENST00000457035 TSPYL6Q8N831 410 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms