RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 TREHO43280 583 aa6.37□□□□□ -1.39
HMGB3-203ENST00000430118 CD2BP2O95400 341 aaKnown RBP6.37□□□□□ -1.39
HMGB3-203ENST00000430118 ADH1CP00326 375 aa6.37□□□□□ -1.39
HMGB3-203ENST00000430118 FSHRP23945 695 aa6.37□□□□□ -1.39
HMGB3-203ENST00000430118 HIRAP54198 1017 aaPredicted RBP6.37□□□□□ -1.39
HMGB3-203ENST00000430118 RAB15P59190 212 aa6.37□□□□□ -1.39
HMGB3-203ENST00000430118 PDE3BQ13370 1112 aa6.37□□□□□ -1.39
HMGB3-203ENST00000430118 CCDC116Q8IYX3 515 aa6.37□□□□□ -1.39
HMGB3-203ENST00000430118 TNS4Q8IZW8 715 aa6.37□□□□□ -1.39
HMGB3-203ENST00000430118 ALKBH8Q96BT7 664 aaKnown RBP6.37□□□□□ -1.39
HMGB3-203ENST00000430118 C2orf49Q9BVC5 232 aaPredicted RBP6.37□□□□□ -1.39
HMGB3-203ENST00000430118 TSPAN10Q9H1Z9 355 aaPredicted RBP6.37□□□□□ -1.39
HMGB3-203ENST00000430118 BRPF3Q9ULD4 1205 aa6.37□□□□□ -1.39
HMGB3-203ENST00000430118 TARBP1Q13395 1621 aaKnown RBP6.36□□□□□ -1.39
HMGB3-203ENST00000430118 AQRO60306 1485 aaKnown RBP eCLIP6.36□□□□□ -1.39
HMGB3-203ENST00000430118 GAPVD1Q14C86 1478 aa6.36□□□□□ -1.39
HMGB3-203ENST00000430118 MAGI1Q96QZ7 1491 aaPredicted RBP6.36□□□□□ -1.39
HMGB3-203ENST00000430118 A6NJY4 79 aa6.36□□□□□ -1.39
HMGB3-203ENST00000430118 PPP1R12BO60237 982 aaPredicted RBP6.36□□□□□ -1.39
HMGB3-203ENST00000430118 RECKO95980 971 aa6.36□□□□□ -1.39
HMGB3-203ENST00000430118 GRM5P41594 1212 aa6.36□□□□□ -1.39
HMGB3-203ENST00000430118 SMTNP53814 917 aa6.36□□□□□ -1.39
HMGB3-203ENST00000430118 CAPN12Q6ZSI9 719 aa6.36□□□□□ -1.39
HMGB3-203ENST00000430118 TMC7Q7Z402 723 aa6.36□□□□□ -1.39
HMGB3-203ENST00000430118 ZNF784Q8NCA9 323 aaPredicted RBP6.36□□□□□ -1.39
HMGB3-203ENST00000430118 PGPEP1Q9NXJ5 209 aa6.36□□□□□ -1.39
HMGB3-203ENST00000430118 STIM2Q9P246 746 aa6.36□□□□□ -1.39
HMGB3-203ENST00000430118 SNAPC4Q5SXM2 1469 aa6.35□□□□□ -1.39
HMGB3-203ENST00000430118 CDK2AP1O14519 115 aa6.35□□□□□ -1.39
HMGB3-203ENST00000430118 LILRA1O75019 489 aa6.35□□□□□ -1.39
HMGB3-203ENST00000430118 MPSTP25325 297 aa6.35□□□□□ -1.39
HMGB3-203ENST00000430118 ZC3H6P61129 1189 aaKnown RBP6.35□□□□□ -1.39
HMGB3-203ENST00000430118 MTMR3Q13615 1198 aa6.35□□□□□ -1.39
HMGB3-203ENST00000430118 MRPL58Q14197 206 aaKnown RBP6.35□□□□□ -1.39
HMGB3-203ENST00000430118 NAA30Q147X3 362 aaPredicted RBP6.35□□□□□ -1.39
HMGB3-203ENST00000430118 RC3H1Q5TC82 1133 aaKnown RBP6.35□□□□□ -1.39
HMGB3-203ENST00000430118 CHMP7Q8WUX9 453 aaPredicted RBP6.35□□□□□ -1.39
HMGB3-203ENST00000430118 XAGE2Q96GT9 111 aa6.35□□□□□ -1.39
HMGB3-203ENST00000430118 PRKD2Q9BZL6 878 aa6.35□□□□□ -1.39
HMGB3-203ENST00000430118 CYLDQ9NQC7 956 aa6.35□□□□□ -1.39
HMGB3-203ENST00000430118 EMILIN1Q9Y6C2 1016 aa6.35□□□□□ -1.39
HMGB3-203ENST00000430118 LOC105371045A0A1W2PR82 267 aa6.34□□□□□ -1.39
HMGB3-203ENST00000430118 SIAH2O43255 324 aa6.34□□□□□ -1.39
HMGB3-203ENST00000430118 LGR5O75473 907 aa6.34□□□□□ -1.39
HMGB3-203ENST00000430118 P4HBP07237 508 aaKnown RBP6.34□□□□□ -1.39
HMGB3-203ENST00000430118 USP5P45974 858 aa6.34□□□□□ -1.39
HMGB3-203ENST00000430118 EIF1AXP47813 144 aaKnown RBP6.34□□□□□ -1.39
HMGB3-203ENST00000430118 DSC3Q14574 896 aa6.34□□□□□ -1.39
HMGB3-203ENST00000430118 PPP1R26Q5T8A7 1209 aaPredicted RBP6.34□□□□□ -1.39
HMGB3-203ENST00000430118 SLC9A9Q8IVB4 645 aa6.34□□□□□ -1.39
HMGB3-203ENST00000430118 FAM129BQ96TA1 746 aa6.34□□□□□ -1.39
HMGB3-203ENST00000430118 USP35Q9P2H5 1018 aa6.34□□□□□ -1.39
HMGB3-203ENST00000430118 A0A1W2PRU2 124 aa6.33□□□□□ -1.4
HMGB3-203ENST00000430118 PPEF1O14829 653 aaPredicted RBP6.33□□□□□ -1.4
HMGB3-203ENST00000430118 PRPF40AO75400 957 aaKnown RBP6.33□□□□□ -1.4
HMGB3-203ENST00000430118 BRD2P25440 801 aaKnown RBP6.33□□□□□ -1.4
HMGB3-203ENST00000430118 ARID5BQ14865 1188 aa6.33□□□□□ -1.4
HMGB3-203ENST00000430118 PLA2G2CQ5R387 149 aa6.33□□□□□ -1.4
HMGB3-203ENST00000430118 Q6ZNB5 142 aa6.33□□□□□ -1.4
HMGB3-203ENST00000430118 TMPRSS4Q9NRS4 437 aa6.33□□□□□ -1.4
HMGB3-203ENST00000430118 SERTAD1Q9UHV2 236 aa6.33□□□□□ -1.4
HMGB3-203ENST00000430118 SYNJ2O15056 1496 aa6.33□□□□□ -1.4
HMGB3-203ENST00000430118 POLA1P09884 1462 aaPredicted RBP6.33□□□□□ -1.4
HMGB3-203ENST00000430118 WNT7AO00755 349 aa6.32□□□□□ -1.4
HMGB3-203ENST00000430118 TNFRSF10BO14763 440 aa6.32□□□□□ -1.4
HMGB3-203ENST00000430118 SCAMP3O14828 347 aaKnown RBP6.32□□□□□ -1.4
HMGB3-203ENST00000430118 FZD6O60353 706 aa6.32□□□□□ -1.4
HMGB3-203ENST00000430118 IGHA2P01877 340 aa6.32□□□□□ -1.4
HMGB3-203ENST00000430118 PLCB3Q01970 1234 aa6.32□□□□□ -1.4
HMGB3-203ENST00000430118 TEAD4Q15561 434 aa6.32□□□□□ -1.4
HMGB3-203ENST00000430118 COX20Q5RI15 118 aa6.32□□□□□ -1.4
HMGB3-203ENST00000430118 SREK1Q8WXA9 508 aaKnown RBP6.32□□□□□ -1.4
HMGB3-203ENST00000430118 ESYT1Q9BSJ8 1104 aa6.32□□□□□ -1.4
HMGB3-203ENST00000430118 QTRT2Q9H974 415 aaKnown RBP6.32□□□□□ -1.4
HMGB3-203ENST00000430118 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.32□□□□□ -1.4
HMGB3-203ENST00000430118 IQSEC3Q9UPP2 1182 aaPredicted RBP6.32□□□□□ -1.4
HMGB3-203ENST00000430118 HRH3Q9Y5N1 445 aa6.32□□□□□ -1.4
HMGB3-203ENST00000430118 GRIN2BQ13224 1484 aa6.31□□□□□ -1.4
HMGB3-203ENST00000430118 ATP2B2Q01814 1243 aa6.31□□□□□ -1.4
HMGB3-203ENST00000430118 CLN3Q13286 438 aa6.31□□□□□ -1.4
HMGB3-203ENST00000430118 SF3A1Q15459 793 aaKnown RBP6.31□□□□□ -1.4
HMGB3-203ENST00000430118 PPP1R18Q6NYC8 613 aa6.31□□□□□ -1.4
HMGB3-203ENST00000430118 SAP130Q9H0E3 1048 aa6.31□□□□□ -1.4
HMGB3-203ENST00000430118 METTL5Q9NRN9 209 aaKnown RBP6.31□□□□□ -1.4
HMGB3-203ENST00000430118 SERTM1A2A2V5 107 aa6.3□□□□□ -1.4
HMGB3-203ENST00000430118 ADH1AP07327 375 aa6.3□□□□□ -1.4
HMGB3-203ENST00000430118 EHHADHQ08426 723 aa6.3□□□□□ -1.4
HMGB3-203ENST00000430118 LAPTM4AQ15012 233 aa6.3□□□□□ -1.4
HMGB3-203ENST00000430118 TLR1Q15399 786 aa6.3□□□□□ -1.4
HMGB3-203ENST00000430118 RTN1Q16799 776 aa6.3□□□□□ -1.4
HMGB3-203ENST00000430118 TSNAXIP1Q2TAA8 658 aa6.3□□□□□ -1.4
HMGB3-203ENST00000430118 TMC4Q7Z404 712 aa6.3□□□□□ -1.4
HMGB3-203ENST00000430118 GJD3Q8N144 294 aa6.3□□□□□ -1.4
HMGB3-203ENST00000430118 FBF1Q8TES7 1133 aa6.3□□□□□ -1.4
HMGB3-203ENST00000430118 DRC1Q96MC2 740 aa6.3□□□□□ -1.4
HMGB3-203ENST00000430118 FRMD6Q96NE9 622 aa6.3□□□□□ -1.4
HMGB3-203ENST00000430118 TLL2Q9Y6L7 1015 aa6.3□□□□□ -1.4
HMGB3-203ENST00000430118 EML1O00423 815 aa6.29□□□□□ -1.4
HMGB3-203ENST00000430118 SOGA1O94964 1423 aa6.29□□□□□ -1.4
HMGB3-203ENST00000430118 IL2RAP01589 272 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms