RNA–Protein interactions for RNA: ENST00000428555.1

TRIM39-208, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-208ENST00000428555 KCPQ6ZWJ8 1503 aa12.54□□□□□ -0.4
TRIM39-208ENST00000428555 PRAMEF22A3QJZ6 481 aa12.54□□□□□ -0.4
TRIM39-208ENST00000428555 GRIN3BO60391 1043 aa12.54□□□□□ -0.4
TRIM39-208ENST00000428555 TM4SF1P30408 202 aa12.54□□□□□ -0.4
TRIM39-208ENST00000428555 EIF5P55010 431 aaKnown RBP12.54□□□□□ -0.4
TRIM39-208ENST00000428555 THUMPD2Q9BTF0 503 aaKnown RBP12.54□□□□□ -0.4
TRIM39-208ENST00000428555 PRKRIP1Q9H875 184 aaPredicted RBP12.54□□□□□ -0.4
TRIM39-208ENST00000428555 NARFQ9UHQ1 456 aa12.54□□□□□ -0.4
TRIM39-208ENST00000428555 USP16Q9Y5T5 823 aa12.54□□□□□ -0.4
TRIM39-208ENST00000428555 COL24A1Q17RW2 1714 aa12.54□□□□□ -0.4
TRIM39-208ENST00000428555 MYH14Q7Z406 1995 aaKnown RBP12.53□□□□□ -0.4
TRIM39-208ENST00000428555 A0A0G2JLW4 131 aa12.53□□□□□ -0.4
TRIM39-208ENST00000428555 DDR1Q08345 913 aa12.53□□□□□ -0.4
TRIM39-208ENST00000428555 ZNF831Q5JPB2 1677 aa12.53□□□□□ -0.4
TRIM39-208ENST00000428555 MAPK8IP3Q9UPT6 1336 aa12.53□□□□□ -0.4
TRIM39-208ENST00000428555 ADAMTS7Q9UKP4 1686 aa12.52□□□□□ -0.4
TRIM39-208ENST00000428555 SNRPA1P09661 255 aaKnown RBP12.52□□□□□ -0.41
TRIM39-208ENST00000428555 RIPK4P57078 832 aa12.52□□□□□ -0.41
TRIM39-208ENST00000428555 TGFB2P61812 414 aa12.52□□□□□ -0.41
TRIM39-208ENST00000428555 BCL2L12Q9HB09 334 aa12.52□□□□□ -0.41
TRIM39-208ENST00000428555 TBC1D2BQ9UPU7 963 aa12.52□□□□□ -0.41
TRIM39-208ENST00000428555 ZNF330Q9Y3S2 320 aaPredicted RBP12.52□□□□□ -0.41
TRIM39-208ENST00000428555 A0A087WZG4 1122 aa12.51□□□□□ -0.41
TRIM39-208ENST00000428555 POLRMTO00411 1230 aaKnown RBP12.51□□□□□ -0.41
TRIM39-208ENST00000428555 DPEP1P16444 411 aa12.51□□□□□ -0.41
TRIM39-208ENST00000428555 PIP4K2AP48426 406 aaPredicted RBP12.51□□□□□ -0.41
TRIM39-208ENST00000428555 NFIXQ14938 502 aa12.51□□□□□ -0.41
TRIM39-208ENST00000428555 CCDC146Q8IYE0 955 aa12.51□□□□□ -0.41
TRIM39-208ENST00000428555 ADAMTS8Q9UP79 889 aa12.51□□□□□ -0.41
TRIM39-208ENST00000428555 COL15A1P39059 1388 aa12.51□□□□□ -0.41
TRIM39-208ENST00000428555 IL6STP40189 918 aaPredicted RBP12.5□□□□□ -0.41
TRIM39-208ENST00000428555 TMPOP42166 694 aaKnown RBP12.5□□□□□ -0.41
TRIM39-208ENST00000428555 BICDL1Q6ZP65 573 aa12.5□□□□□ -0.41
TRIM39-208ENST00000428555 RRP7AQ9Y3A4 280 aaKnown RBP12.5□□□□□ -0.41
TRIM39-208ENST00000428555 COL5A3P25940 1745 aaPredicted RBP12.49□□□□□ -0.41
TRIM39-208ENST00000428555 TJP1Q07157 1748 aa12.49□□□□□ -0.41
TRIM39-208ENST00000428555 KCNA3P22001 575 aa12.49□□□□□ -0.41
TRIM39-208ENST00000428555 WDR43Q15061 677 aaKnown RBP eCLIP12.49□□□□□ -0.41
TRIM39-208ENST00000428555 NEUROD2Q15784 382 aa12.49□□□□□ -0.41
TRIM39-208ENST00000428555 NPM2Q86SE8 214 aaKnown RBP12.49□□□□□ -0.41
TRIM39-208ENST00000428555 ZNF784Q8NCA9 323 aaPredicted RBP12.49□□□□□ -0.41
TRIM39-208ENST00000428555 PNISRQ8TF01 805 aaKnown RBP12.49□□□□□ -0.41
TRIM39-208ENST00000428555 ZNF316A6NFI3 1004 aaPredicted RBP12.48□□□□□ -0.41
TRIM39-208ENST00000428555 NBPF26B4DH59 902 aa12.48□□□□□ -0.41
TRIM39-208ENST00000428555 SERPINB2P05120 415 aa12.48□□□□□ -0.41
TRIM39-208ENST00000428555 EIF4A1P60842 406 aaKnown RBP12.48□□□□□ -0.41
TRIM39-208ENST00000428555 NBPF10Q6P3W6 841 aaKnown RBP12.48□□□□□ -0.41
TRIM39-208ENST00000428555 NBPF15Q8N660 670 aa12.48□□□□□ -0.41
TRIM39-208ENST00000428555 BCS1LQ9Y276 419 aa12.48□□□□□ -0.41
TRIM39-208ENST00000428555 CAMTA2O94983 1202 aa12.47□□□□□ -0.41
TRIM39-208ENST00000428555 CHRNA5P30532 468 aa12.47□□□□□ -0.41
TRIM39-208ENST00000428555 TBC1D9BQ66K14 1250 aa12.47□□□□□ -0.41
TRIM39-208ENST00000428555 RUNDC1Q96C34 613 aa12.47□□□□□ -0.41
TRIM39-208ENST00000428555 GIGYF1O75420 1035 aaPredicted RBP12.46□□□□□ -0.41
TRIM39-208ENST00000428555 DZIP3Q86Y13 1208 aaKnown RBP12.46□□□□□ -0.41
TRIM39-208ENST00000428555 CICQ96RK0 1608 aaPredicted RBP12.46□□□□□ -0.41
TRIM39-208ENST00000428555 PXDNLA1KZ92 1463 aa12.46□□□□□ -0.42
TRIM39-208ENST00000428555 C10orf71Q711Q0 1435 aa12.45□□□□□ -0.42
TRIM39-208ENST00000428555 PIM2Q9P1W9 311 aa12.45□□□□□ -0.42
TRIM39-208ENST00000428555 TSPYL4Q9UJ04 414 aa12.45□□□□□ -0.42
TRIM39-208ENST00000428555 TRIM35Q9UPQ4 493 aa12.45□□□□□ -0.42
TRIM39-208ENST00000428555 LMOD3Q0VAK6 560 aa12.44□□□□□ -0.42
TRIM39-208ENST00000428555 CCDC184Q52MB2 194 aa12.44□□□□□ -0.42
TRIM39-208ENST00000428555 ARHGAP27Q6ZUM4 889 aa12.44□□□□□ -0.42
TRIM39-208ENST00000428555 CCDC24Q8N4L8 307 aa12.44□□□□□ -0.42
TRIM39-208ENST00000428555 NGEFQ8N5V2 710 aa12.44□□□□□ -0.42
TRIM39-208ENST00000428555 SETDB2Q96T68 719 aa12.44□□□□□ -0.42
TRIM39-208ENST00000428555 DALRD3Q5D0E6 543 aaKnown RBP12.43□□□□□ -0.42
TRIM39-208ENST00000428555 UBR2Q8IWV8 1755 aa12.43□□□□□ -0.42
TRIM39-208ENST00000428555 CLEC4GQ6UXB4 293 aa12.42□□□□□ -0.42
TRIM39-208ENST00000428555 BABAM1Q9NWV8 329 aa12.42□□□□□ -0.42
TRIM39-208ENST00000428555 LAS1LQ9Y4W2 734 aaKnown RBP12.42□□□□□ -0.42
TRIM39-208ENST00000428555 SIPA1L3O60292 1781 aaPredicted RBP12.42□□□□□ -0.42
TRIM39-208ENST00000428555 C4AP0C0L4 1744 aa12.42□□□□□ -0.42
TRIM39-208ENST00000428555 CHL1O00533 1208 aa12.41□□□□□ -0.42
TRIM39-208ENST00000428555 APAF1O14727 1248 aa12.41□□□□□ -0.42
TRIM39-208ENST00000428555 MYL6BP14649 208 aa12.41□□□□□ -0.42
TRIM39-208ENST00000428555 EIF2S2P20042 333 aaKnown RBP12.41□□□□□ -0.42
TRIM39-208ENST00000428555 HLFQ16534 295 aa12.41□□□□□ -0.42
TRIM39-208ENST00000428555 PRR5LQ6MZQ0 368 aa12.41□□□□□ -0.42
TRIM39-208ENST00000428555 C2CD5Q86YS7 1000 aa12.41□□□□□ -0.42
TRIM39-208ENST00000428555 VIRMAQ69YN4 1812 aaKnown RBP12.41□□□□□ -0.42
TRIM39-208ENST00000428555 H0YIN7 160 aa12.4□□□□□ -0.42
TRIM39-208ENST00000428555 TTLL7Q6ZT98 887 aa12.4□□□□□ -0.42
TRIM39-208ENST00000428555 BRIP1Q9BX63 1249 aa12.4□□□□□ -0.42
TRIM39-208ENST00000428555 FAM177BA6PVY3 158 aa12.39□□□□□ -0.43
TRIM39-208ENST00000428555 NPHP1O15259 732 aa12.39□□□□□ -0.43
TRIM39-208ENST00000428555 KRT24Q2M2I5 525 aa12.39□□□□□ -0.43
TRIM39-208ENST00000428555 NECTIN2Q92692 538 aa12.39□□□□□ -0.43
TRIM39-208ENST00000428555 NIP7Q9Y221 180 aaKnown RBP eCLIP12.39□□□□□ -0.43
TRIM39-208ENST00000428555 ZNF652Q9Y2D9 606 aa12.39□□□□□ -0.43
TRIM39-208ENST00000428555 CARMIL3Q8ND23 1372 aa12.39□□□□□ -0.43
TRIM39-208ENST00000428555 SENP3-EIF4A1A0A087X0R7 540 aa12.38□□□□□ -0.43
TRIM39-208ENST00000428555 ANP32CO43423 234 aa12.38□□□□□ -0.43
TRIM39-208ENST00000428555 PDE6BP35913 854 aa12.38□□□□□ -0.43
TRIM39-208ENST00000428555 PDIA6Q15084 440 aa12.38□□□□□ -0.43
TRIM39-208ENST00000428555 NBPF5PQ86XG9 351 aaPredicted RBP12.38□□□□□ -0.43
TRIM39-208ENST00000428555 TTLL6Q8N841 843 aa12.38□□□□□ -0.43
TRIM39-208ENST00000428555 CNBD1Q8NA66 436 aa12.38□□□□□ -0.43
TRIM39-208ENST00000428555 ZNF526Q8TF50 670 aaPredicted RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms