RNA–Protein interactions for RNA: ENST00000426155.6

SNX3-204, Transcript of sorting nexin 3, humanhuman

TSL 1 (best) BASIC

Gene SNX3, Length 1,072 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-204ENST00000426155 WDR43Q15061 677 aaKnown RBP eCLIP18.04■□□□□ 0.48
SNX3-204ENST00000426155 CCDC184Q52MB2 194 aa18.04■□□□□ 0.48
SNX3-204ENST00000426155 TRAPPC3LQ5T215 181 aa18.04■□□□□ 0.48
SNX3-204ENST00000426155 CCDC87Q9NVE4 849 aa18.04■□□□□ 0.48
SNX3-204ENST00000426155 ZBTB1Q9Y2K1 713 aa18.04■□□□□ 0.48
SNX3-204ENST00000426155 HTATSF1O43719 755 aaKnown RBP18.03■□□□□ 0.48
SNX3-204ENST00000426155 VSIG10Q8N0Z9 540 aa18.03■□□□□ 0.48
SNX3-204ENST00000426155 MIS18AQ9NYP9 233 aa18.03■□□□□ 0.48
SNX3-204ENST00000426155 SRP68Q9UHB9 627 aaKnown RBP18.03■□□□□ 0.48
SNX3-204ENST00000426155 RRP7AQ9Y3A4 280 aaKnown RBP18.03■□□□□ 0.48
SNX3-204ENST00000426155 PRAMEF22A3QJZ6 481 aa18.02■□□□□ 0.48
SNX3-204ENST00000426155 NLGN2Q8NFZ4 835 aa18.02■□□□□ 0.48
SNX3-204ENST00000426155 PNNQ9H307 717 aaKnown RBP18.02■□□□□ 0.48
SNX3-204ENST00000426155 ADAMTS8Q9UP79 889 aa18.02■□□□□ 0.48
SNX3-204ENST00000426155 SOS1Q07889 1333 aaPredicted RBP18.01■□□□□ 0.47
SNX3-204ENST00000426155 FMNL2Q96PY5 1086 aa18.01■□□□□ 0.47
SNX3-204ENST00000426155 SCN7AQ01118 1682 aa18.01■□□□□ 0.47
SNX3-204ENST00000426155 COL15A1P39059 1388 aa18.01■□□□□ 0.47
SNX3-204ENST00000426155 UTRNP46939 3433 aa18.01■□□□□ 0.47
SNX3-204ENST00000426155 GYS1P13807 737 aa18■□□□□ 0.47
SNX3-204ENST00000426155 RFC4P35249 363 aa18■□□□□ 0.47
SNX3-204ENST00000426155 RIPK4P57078 832 aa18■□□□□ 0.47
SNX3-204ENST00000426155 KIAA1551Q9HCM1 1747 aa18■□□□□ 0.47
SNX3-204ENST00000426155 KIF13BQ9NQT8 1826 aa18■□□□□ 0.47
SNX3-204ENST00000426155 USP42Q9H9J4 1324 aaKnown RBP17.99■□□□□ 0.47
SNX3-204ENST00000426155 GOLGB1Q14789 3259 aaKnown RBP17.99■□□□□ 0.47
SNX3-204ENST00000426155 MMP10P09238 476 aa17.99■□□□□ 0.47
SNX3-204ENST00000426155 CANXP27824 592 aaKnown RBP17.99■□□□□ 0.47
SNX3-204ENST00000426155 TMPOP42166 694 aaKnown RBP17.99■□□□□ 0.47
SNX3-204ENST00000426155 BCORQ6W2J9 1755 aa17.99■□□□□ 0.47
SNX3-204ENST00000426155 TAF7Q15545 349 aaPredicted RBP17.98■□□□□ 0.47
SNX3-204ENST00000426155 NEUROD2Q15784 382 aa17.98■□□□□ 0.47
SNX3-204ENST00000426155 RUNDC1Q96C34 613 aa17.98■□□□□ 0.47
SNX3-204ENST00000426155 N4BP2Q86UW6 1770 aaPredicted RBP17.98■□□□□ 0.47
SNX3-204ENST00000426155 AFDNP55196 1824 aaKnown RBP17.98■□□□□ 0.47
SNX3-204ENST00000426155 PIP4K2AP48426 406 aaPredicted RBP17.97■□□□□ 0.47
SNX3-204ENST00000426155 STARD3NLO95772 234 aa17.96■□□□□ 0.47
SNX3-204ENST00000426155 A1BGP04217 495 aa17.96■□□□□ 0.47
SNX3-204ENST00000426155 FKBP8Q14318 412 aa17.96■□□□□ 0.47
SNX3-204ENST00000426155 USPL1Q5W0Q7 1092 aa17.96■□□□□ 0.47
SNX3-204ENST00000426155 ZNF330Q9Y3S2 320 aaPredicted RBP17.96■□□□□ 0.47
SNX3-204ENST00000426155 USP16Q9Y5T5 823 aa17.96■□□□□ 0.47
SNX3-204ENST00000426155 ANP32CO43423 234 aa17.95■□□□□ 0.46
SNX3-204ENST00000426155 SENP3-EIF4A1A0A087X0R7 540 aa17.94■□□□□ 0.46
SNX3-204ENST00000426155 NLGN1Q8N2Q7 840 aa17.94■□□□□ 0.46
SNX3-204ENST00000426155 TRIM35Q9UPQ4 493 aa17.94■□□□□ 0.46
SNX3-204ENST00000426155 EIF5P55010 431 aaKnown RBP17.93■□□□□ 0.46
SNX3-204ENST00000426155 DDR1Q08345 913 aa17.93■□□□□ 0.46
SNX3-204ENST00000426155 TEX13AQ9BXU3 409 aaPredicted RBP17.93■□□□□ 0.46
SNX3-204ENST00000426155 C10orf71Q711Q0 1435 aa17.92■□□□□ 0.46
SNX3-204ENST00000426155 ZPR1O75312 459 aa17.92■□□□□ 0.46
SNX3-204ENST00000426155 SNRPA1P09661 255 aaKnown RBP17.92■□□□□ 0.46
SNX3-204ENST00000426155 PELP1Q8IZL8 1130 aaKnown RBP17.92■□□□□ 0.46
SNX3-204ENST00000426155 BCL2L12Q9HB09 334 aa17.92■□□□□ 0.46
SNX3-204ENST00000426155 NARFQ9UHQ1 456 aa17.92■□□□□ 0.46
SNX3-204ENST00000426155 WWC3Q9ULE0 1092 aa17.92■□□□□ 0.46
SNX3-204ENST00000426155 U3KPZ7 1027 aaPredicted RBP17.92■□□□□ 0.46
SNX3-204ENST00000426155 NRXN2Q9P2S2 1712 aa17.92■□□□□ 0.46
SNX3-204ENST00000426155 BRCA1P38398 1863 aaKnown RBP17.91■□□□□ 0.46
SNX3-204ENST00000426155 EIF4A1P60842 406 aaKnown RBP17.91■□□□□ 0.46
SNX3-204ENST00000426155 LMOD3Q0VAK6 560 aa17.91■□□□□ 0.46
SNX3-204ENST00000426155 PNISRQ8TF01 805 aaKnown RBP17.91■□□□□ 0.46
SNX3-204ENST00000426155 MRS2Q9HD23 443 aa17.91■□□□□ 0.46
SNX3-204ENST00000426155 TSPYL4Q9UJ04 414 aa17.91■□□□□ 0.46
SNX3-204ENST00000426155 CD2APQ9Y5K6 639 aa17.91■□□□□ 0.46
SNX3-204ENST00000426155 CHD4Q14839 1912 aa17.9■□□□□ 0.46
SNX3-204ENST00000426155 PXDNLA1KZ92 1463 aa17.9■□□□□ 0.46
SNX3-204ENST00000426155 APAF1O14727 1248 aa17.9■□□□□ 0.46
SNX3-204ENST00000426155 TBC1D2BQ9UPU7 963 aa17.9■□□□□ 0.46
SNX3-204ENST00000426155 NBPF26B4DH59 902 aa17.89■□□□□ 0.45
SNX3-204ENST00000426155 IL6STP40189 918 aaPredicted RBP17.89■□□□□ 0.45
SNX3-204ENST00000426155 NBPF10Q6P3W6 841 aaKnown RBP17.89■□□□□ 0.45
SNX3-204ENST00000426155 NBPF15Q8N660 670 aa17.89■□□□□ 0.45
SNX3-204ENST00000426155 PARP3Q9Y6F1 533 aa17.89■□□□□ 0.45
SNX3-204ENST00000426155 POLRMTO00411 1230 aaKnown RBP17.88■□□□□ 0.45
SNX3-204ENST00000426155 GIGYF1O75420 1035 aaPredicted RBP17.88■□□□□ 0.45
SNX3-204ENST00000426155 SLC4A2P04920 1241 aa17.88■□□□□ 0.45
SNX3-204ENST00000426155 YBX3P16989 372 aaKnown RBP eCLIP17.88■□□□□ 0.451e-8■■□□□ 12.1
SNX3-204ENST00000426155 NFIXQ14938 502 aa17.88■□□□□ 0.45
SNX3-204ENST00000426155 GPR162Q16538 588 aa17.88■□□□□ 0.45
SNX3-204ENST00000426155 ANKRD31Q8N7Z5 1873 aa17.87■□□□□ 0.45
SNX3-204ENST00000426155 TM4SF1P30408 202 aa17.87■□□□□ 0.45
SNX3-204ENST00000426155 LAS1LQ9Y4W2 734 aaKnown RBP17.87■□□□□ 0.45
SNX3-204ENST00000426155 A0A087WZG4 1122 aa17.86■□□□□ 0.45
SNX3-204ENST00000426155 KRT24Q2M2I5 525 aa17.86■□□□□ 0.45
SNX3-204ENST00000426155 BICDL1Q6ZP65 573 aa17.86■□□□□ 0.45
SNX3-204ENST00000426155 CAMTA2O94983 1202 aa17.85■□□□□ 0.45
SNX3-204ENST00000426155 NUP98P52948 1817 aa17.85■□□□□ 0.45
SNX3-204ENST00000426155 TBC1D9BQ66K14 1250 aa17.85■□□□□ 0.45
SNX3-204ENST00000426155 DZIP3Q86Y13 1208 aaKnown RBP17.85■□□□□ 0.45
SNX3-204ENST00000426155 DLEC1Q9Y238 1755 aa17.84■□□□□ 0.45
SNX3-204ENST00000426155 CARMIL3Q8ND23 1372 aa17.84■□□□□ 0.45
SNX3-204ENST00000426155 COL11A2P13942 1736 aaPredicted RBP17.84■□□□□ 0.45
SNX3-204ENST00000426155 A0A0G2JLW4 131 aa17.83■□□□□ 0.44
SNX3-204ENST00000426155 NGEFQ8N5V2 710 aa17.83■□□□□ 0.44
SNX3-204ENST00000426155 CHL1O00533 1208 aa17.82■□□□□ 0.44
SNX3-204ENST00000426155 MYL6BP14649 208 aa17.82■□□□□ 0.44
SNX3-204ENST00000426155 NPM2Q86SE8 214 aaKnown RBP17.82■□□□□ 0.44
SNX3-204ENST00000426155 SERPINB2P05120 415 aa17.81■□□□□ 0.44
SNX3-204ENST00000426155 DPEP1P16444 411 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms