RNA–Protein interactions for RNA: ENST00000417545.4

TRIM48-201, Transcript of tripartite motif containing 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM48, Length 1,445 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48-201ENST00000417545 EN1Q05925 392 aaPredicted RBP10.89□□□□□ -0.67
TRIM48-201ENST00000417545 TXNRD1Q16881 649 aa10.89□□□□□ -0.67
TRIM48-201ENST00000417545 CHRDL2Q6WN34 429 aa10.89□□□□□ -0.67
TRIM48-201ENST00000417545 NECTIN2Q92692 538 aa10.89□□□□□ -0.67
TRIM48-201ENST00000417545 STK31Q9BXU1 1019 aa10.89□□□□□ -0.67
TRIM48-201ENST00000417545 TAF1LQ8IZX4 1826 aa10.88□□□□□ -0.67
TRIM48-201ENST00000417545 SOS1Q07889 1333 aaPredicted RBP10.88□□□□□ -0.67
TRIM48-201ENST00000417545 CENPBP07199 599 aaPredicted RBP10.88□□□□□ -0.67
TRIM48-201ENST00000417545 HOXB7P09629 217 aa10.88□□□□□ -0.67
TRIM48-201ENST00000417545 KRT24Q2M2I5 525 aa10.88□□□□□ -0.67
TRIM48-201ENST00000417545 DEFB132Q7Z7B7 95 aa10.88□□□□□ -0.67
TRIM48-201ENST00000417545 DNAJC10Q8IXB1 793 aa10.88□□□□□ -0.67
TRIM48-201ENST00000417545 AK7Q96M32 723 aa10.88□□□□□ -0.67
TRIM48-201ENST00000417545 ZNF330Q9Y3S2 320 aaPredicted RBP10.88□□□□□ -0.67
TRIM48-201ENST00000417545 CICQ96RK0 1608 aaPredicted RBP10.87□□□□□ -0.67
TRIM48-201ENST00000417545 COL5A3P25940 1745 aaPredicted RBP10.87□□□□□ -0.67
TRIM48-201ENST00000417545 GIGYF1O75420 1035 aaPredicted RBP10.87□□□□□ -0.67
TRIM48-201ENST00000417545 KCNQ4P56696 695 aa10.87□□□□□ -0.67
TRIM48-201ENST00000417545 EZH2Q15910 746 aaKnown RBP10.87□□□□□ -0.67
TRIM48-201ENST00000417545 CCDC30Q5VVM6 783 aa10.87□□□□□ -0.67
TRIM48-201ENST00000417545 C8orf58Q8NAV2 365 aa10.87□□□□□ -0.67
TRIM48-201ENST00000417545 UPF1Q92900 1129 aaKnown RBP eCLIP10.87□□□□□ -0.67
TRIM48-201ENST00000417545 RREB1Q92766 1687 aa10.87□□□□□ -0.67
TRIM48-201ENST00000417545 CT47B1P0C2W7 299 aaPredicted RBP10.86□□□□□ -0.67
TRIM48-201ENST00000417545 ARXQ96QS3 562 aa10.86□□□□□ -0.67
TRIM48-201ENST00000417545 C4BP0C0L5 1744 aa10.86□□□□□ -0.67
TRIM48-201ENST00000417545 EP400Q96L91 3159 aa10.85□□□□□ -0.67
TRIM48-201ENST00000417545 MYL6BP14649 208 aa10.85□□□□□ -0.67
TRIM48-201ENST00000417545 CANXP27824 592 aaKnown RBP10.85□□□□□ -0.67
TRIM48-201ENST00000417545 NBPF14Q5TI25 921 aa10.85□□□□□ -0.67
TRIM48-201ENST00000417545 TSPYL6Q8N831 410 aa10.85□□□□□ -0.67
TRIM48-201ENST00000417545 SMC4Q9NTJ3 1288 aa10.85□□□□□ -0.67
TRIM48-201ENST00000417545 CCDC87Q9NVE4 849 aa10.85□□□□□ -0.67
TRIM48-201ENST00000417545 STK32BQ9NY57 414 aa10.85□□□□□ -0.67
TRIM48-201ENST00000417545 NUP188Q5SRE5 1749 aa10.85□□□□□ -0.67
TRIM48-201ENST00000417545 PRAMEF22A3QJZ6 481 aa10.84□□□□□ -0.67
TRIM48-201ENST00000417545 TCERG1O14776 1098 aaKnown RBP10.84□□□□□ -0.67
TRIM48-201ENST00000417545 CRKLP46109 303 aaKnown RBP10.84□□□□□ -0.67
TRIM48-201ENST00000417545 ITPK1Q13572 414 aa10.84□□□□□ -0.67
TRIM48-201ENST00000417545 TRMT2AQ8IZ69 625 aaKnown RBP10.84□□□□□ -0.67
TRIM48-201ENST00000417545 ZNF428Q96B54 188 aa10.84□□□□□ -0.67
TRIM48-201ENST00000417545 USP16Q9Y5T5 823 aa10.84□□□□□ -0.67
TRIM48-201ENST00000417545 CACNA1FO60840 1977 aa10.84□□□□□ -0.67
TRIM48-201ENST00000417545 ERBB4Q15303 1308 aa10.84□□□□□ -0.67
TRIM48-201ENST00000417545 GNPATO15228 680 aa10.84□□□□□ -0.67
TRIM48-201ENST00000417545 CYP19A1P11511 503 aaPredicted RBP10.84□□□□□ -0.67
TRIM48-201ENST00000417545 LINC00116Q8NCU8 138 aa10.84□□□□□ -0.67
TRIM48-201ENST00000417545 SLC4A9Q96Q91 983 aa10.84□□□□□ -0.67
TRIM48-201ENST00000417545 CAMKK2Q96RR4 588 aa10.84□□□□□ -0.67
TRIM48-201ENST00000417545 TFCP2L1Q9NZI6 479 aa10.84□□□□□ -0.67
TRIM48-201ENST00000417545 DBF4Q9UBU7 674 aaPredicted RBP10.84□□□□□ -0.67
TRIM48-201ENST00000417545 CNTNAP4Q9C0A0 1308 aa10.83□□□□□ -0.68
TRIM48-201ENST00000417545 VAMP4O75379 141 aa10.83□□□□□ -0.68
TRIM48-201ENST00000417545 PHF14O94880 888 aa10.83□□□□□ -0.68
TRIM48-201ENST00000417545 A1BGP04217 495 aa10.83□□□□□ -0.68
TRIM48-201ENST00000417545 KIF6Q6ZMV9 814 aa10.83□□□□□ -0.68
TRIM48-201ENST00000417545 BCL2L13Q9BXK5 485 aa10.83□□□□□ -0.68
TRIM48-201ENST00000417545 LRRC4BQ9NT99 713 aa10.83□□□□□ -0.68
TRIM48-201ENST00000417545 CHPF2Q9P2E5 772 aa10.83□□□□□ -0.68
TRIM48-201ENST00000417545 RTCBQ9Y3I0 505 aaKnown RBP10.83□□□□□ -0.68
TRIM48-201ENST00000417545 A0A087WZG4 1122 aa10.82□□□□□ -0.68
TRIM48-201ENST00000417545 PIP4K2AP48426 406 aaPredicted RBP10.82□□□□□ -0.68
TRIM48-201ENST00000417545 AIMP1Q12904 312 aaKnown RBP10.82□□□□□ -0.68
TRIM48-201ENST00000417545 ALDH1L2Q3SY69 923 aa10.82□□□□□ -0.68
TRIM48-201ENST00000417545 DDX21Q9NR30 783 aaKnown RBP eCLIP10.82□□□□□ -0.68
TRIM48-201ENST00000417545 HYPKQ9NX55 129 aa10.82□□□□□ -0.68
TRIM48-201ENST00000417545 RCAN3Q9UKA8 241 aa10.82□□□□□ -0.68
TRIM48-201ENST00000417545 ZBTB1Q9Y2K1 713 aa10.82□□□□□ -0.68
TRIM48-201ENST00000417545 DDX58O95786 925 aaKnown RBP10.81□□□□□ -0.68
TRIM48-201ENST00000417545 IL6STP40189 918 aaPredicted RBP10.81□□□□□ -0.68
TRIM48-201ENST00000417545 RC3H1Q5TC82 1133 aaKnown RBP10.81□□□□□ -0.68
TRIM48-201ENST00000417545 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.81□□□□□ -0.68
TRIM48-201ENST00000417545 KIF16BQ96L93 1317 aa10.81□□□□□ -0.68
TRIM48-201ENST00000417545 COL15A1P39059 1388 aa10.8□□□□□ -0.68
TRIM48-201ENST00000417545 ANXA1P04083 346 aa10.8□□□□□ -0.68
TRIM48-201ENST00000417545 RFC4P35249 363 aa10.8□□□□□ -0.68
TRIM48-201ENST00000417545 FKBP5Q13451 457 aaPredicted RBP10.8□□□□□ -0.68
TRIM48-201ENST00000417545 UBR3Q6ZT12 1888 aa10.8□□□□□ -0.68
TRIM48-201ENST00000417545 PROM2Q8N271 834 aa10.8□□□□□ -0.68
TRIM48-201ENST00000417545 FLAD1Q8NFF5 587 aa10.8□□□□□ -0.68
TRIM48-201ENST00000417545 FRAT1Q92837 279 aaPredicted RBP10.8□□□□□ -0.68
TRIM48-201ENST00000417545 MYH14Q7Z406 1995 aaKnown RBP10.8□□□□□ -0.68
TRIM48-201ENST00000417545 TUBGCP6Q96RT7 1819 aa10.8□□□□□ -0.68
TRIM48-201ENST00000417545 ZPR1O75312 459 aa10.79□□□□□ -0.68
TRIM48-201ENST00000417545 RPS6KA4O75676 772 aa10.79□□□□□ -0.68
TRIM48-201ENST00000417545 RARSP54136 660 aaKnown RBP10.79□□□□□ -0.68
TRIM48-201ENST00000417545 TRAPPC3LQ5T215 181 aa10.79□□□□□ -0.68
TRIM48-201ENST00000417545 DZIP3Q86Y13 1208 aaKnown RBP10.79□□□□□ -0.68
TRIM48-201ENST00000417545 SSH1Q8WYL5 1049 aa10.79□□□□□ -0.68
TRIM48-201ENST00000417545 IPO8O15397 1037 aaKnown RBP10.78□□□□□ -0.68
TRIM48-201ENST00000417545 SSFA2P28290 1259 aa10.78□□□□□ -0.68
TRIM48-201ENST00000417545 SLC15A2Q16348 729 aa10.78□□□□□ -0.68
TRIM48-201ENST00000417545 INTS5Q6P9B9 1019 aaKnown RBP10.78□□□□□ -0.68
TRIM48-201ENST00000417545 RIC3Q7Z5B4 369 aa10.78□□□□□ -0.68
TRIM48-201ENST00000417545 XAGE3Q8WTP9 111 aa10.78□□□□□ -0.68
TRIM48-201ENST00000417545 ZNF652Q9Y2D9 606 aa10.78□□□□□ -0.68
TRIM48-201ENST00000417545 C4AP0C0L4 1744 aa10.78□□□□□ -0.68
TRIM48-201ENST00000417545 QSER1Q2KHR3 1735 aa10.78□□□□□ -0.68
TRIM48-201ENST00000417545 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.77□□□□□ -0.68
TRIM48-201ENST00000417545 NBPF26B4DH59 902 aa10.77□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms