RNA–Protein interactions for RNA: ENST00000415298.5

AP1S3-205, Transcript of adaptor related protein complex 1 subunit sigma 3, humanhuman

TSL 1 (best)

Gene AP1S3, Length 2,515 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3-205ENST00000415298 PDCL2Q8N4E4 241 aa24.9■■□□□ 1.58
AP1S3-205ENST00000415298 GTF3C5Q9Y5Q8 519 aaPredicted RBP24.9■■□□□ 1.58
AP1S3-205ENST00000415298 RBM25P49756 843 aaKnown RBP24.89■■□□□ 1.57
AP1S3-205ENST00000415298 EVA1CP58658 441 aa24.89■■□□□ 1.57
AP1S3-205ENST00000415298 LARP1Q6PKG0 1096 aaKnown RBP24.89■■□□□ 1.57
AP1S3-205ENST00000415298 MAPK8IP3Q9UPT6 1336 aa24.89■■□□□ 1.57
AP1S3-205ENST00000415298 KDRP35968 1356 aa24.89■■□□□ 1.57
AP1S3-205ENST00000415298 FAM43BQ6ZT52 329 aaPredicted RBP24.88■■□□□ 1.57
AP1S3-205ENST00000415298 COL5A2P05997 1499 aaPredicted RBP24.88■■□□□ 1.57
AP1S3-205ENST00000415298 PDE3BQ13370 1112 aa24.88■■□□□ 1.57
AP1S3-205ENST00000415298 LMOD3Q0VAK6 560 aa24.87■■□□□ 1.57
AP1S3-205ENST00000415298 CCDC9Q9Y3X0 531 aaKnown RBP24.87■■□□□ 1.57
AP1S3-205ENST00000415298 CEP120Q8N960 986 aa24.87■■□□□ 1.57
AP1S3-205ENST00000415298 PDLIM2Q96JY6 352 aa24.87■■□□□ 1.57
AP1S3-205ENST00000415298 TMPOP42166 694 aaKnown RBP24.86■■□□□ 1.57
AP1S3-205ENST00000415298 TOM1L2Q6ZVM7 507 aa24.86■■□□□ 1.57
AP1S3-205ENST00000415298 EGFL6Q8IUX8 553 aa24.86■■□□□ 1.57
AP1S3-205ENST00000415298 PLIN1O60240 522 aa24.86■■□□□ 1.57
AP1S3-205ENST00000415298 BANK1Q8NDB2 785 aa24.86■■□□□ 1.57
AP1S3-205ENST00000415298 C8orf37Q96NL8 207 aa24.86■■□□□ 1.57
AP1S3-205ENST00000415298 LRP6O75581 1613 aa24.86■■□□□ 1.57
AP1S3-205ENST00000415298 SLFN14P0C7P3 912 aa24.85■■□□□ 1.57
AP1S3-205ENST00000415298 WDR17Q8IZU2 1322 aa24.85■■□□□ 1.57
AP1S3-205ENST00000415298 OGFRQ9NZT2 677 aa24.85■■□□□ 1.57
AP1S3-205ENST00000415298 IBTKQ9P2D0 1353 aaPredicted RBP24.83■■□□□ 1.57
AP1S3-205ENST00000415298 SPATA31A6Q5VVP1 1343 aa24.83■■□□□ 1.57
AP1S3-205ENST00000415298 TSC1Q92574 1164 aa24.83■■□□□ 1.57
AP1S3-205ENST00000415298 JARID2Q92833 1246 aaPredicted RBP24.83■■□□□ 1.57
AP1S3-205ENST00000415298 ABCC6O95255 1503 aa24.83■■□□□ 1.57
AP1S3-205ENST00000415298 MTHFSDQ2M296 383 aaKnown RBP24.83■■□□□ 1.57
AP1S3-205ENST00000415298 COL14A1Q05707 1796 aaKnown RBP24.82■■□□□ 1.56
AP1S3-205ENST00000415298 SEC24BO95487 1268 aa24.82■■□□□ 1.56
AP1S3-205ENST00000415298 CDCA7LQ96GN5 454 aa24.82■■□□□ 1.56
AP1S3-205ENST00000415298 NGLY1Q96IV0 654 aa24.82■■□□□ 1.56
AP1S3-205ENST00000415298 U2AF2P26368 475 aaKnown RBP eCLIP24.8■■□□□ 1.56
AP1S3-205ENST00000415298 FEZ2Q9UHY8 353 aaPredicted RBP24.8■■□□□ 1.56
AP1S3-205ENST00000415298 TRIM35Q9UPQ4 493 aa24.8■■□□□ 1.56
AP1S3-205ENST00000415298 HSP90AB1P08238 724 aaKnown RBP24.8■■□□□ 1.56
AP1S3-205ENST00000415298 MYCBPQ99417 103 aaPredicted RBP24.8■■□□□ 1.56
AP1S3-205ENST00000415298 NFE2L2Q16236 605 aa24.79■■□□□ 1.56
AP1S3-205ENST00000415298 C20orf194Q5TEA3 1177 aa24.79■■□□□ 1.56
AP1S3-205ENST00000415298 SPRYD3Q8NCJ5 442 aa24.79■■□□□ 1.56
AP1S3-205ENST00000415298 PLCD4Q9BRC7 762 aa24.79■■□□□ 1.56
AP1S3-205ENST00000415298 NCAPD2Q15021 1401 aa24.79■■□□□ 1.56
AP1S3-205ENST00000415298 UPF2Q9HAU5 1272 aaKnown RBP24.78■■□□□ 1.56
AP1S3-205ENST00000415298 SPINK5Q9NQ38 1064 aaPredicted RBP24.78■■□□□ 1.56
AP1S3-205ENST00000415298 ZNF521Q96K83 1311 aa24.78■■□□□ 1.56
AP1S3-205ENST00000415298 TNNT3P45378 269 aaPredicted RBP24.78■■□□□ 1.56
AP1S3-205ENST00000415298 MFAP1P55081 439 aaKnown RBP24.78■■□□□ 1.56
AP1S3-205ENST00000415298 DCTN1Q14203 1278 aa24.78■■□□□ 1.56
AP1S3-205ENST00000415298 EP400NLQ6ZTU2 488 aa24.78■■□□□ 1.56
AP1S3-205ENST00000415298 PLCH1Q4KWH8 1693 aa24.78■■□□□ 1.56
AP1S3-205ENST00000415298 THUMPD2Q9BTF0 503 aaKnown RBP24.77■■□□□ 1.56
AP1S3-205ENST00000415298 CCDC39Q9UFE4 941 aa24.77■■□□□ 1.56
AP1S3-205ENST00000415298 FAM208AQ9UK61 1670 aaKnown RBP24.77■■□□□ 1.56
AP1S3-205ENST00000415298 TBC1D32Q96NH3 1257 aa24.77■■□□□ 1.56
AP1S3-205ENST00000415298 BCL2L12Q9HB09 334 aa24.77■■□□□ 1.56
AP1S3-205ENST00000415298 FBXO41Q8TF61 875 aa24.76■■□□□ 1.55
AP1S3-205ENST00000415298 PHF23Q9BUL5 403 aaPredicted RBP24.76■■□□□ 1.55
AP1S3-205ENST00000415298 MEX3CQ5U5Q3 659 aaKnown RBP24.75■■□□□ 1.55
AP1S3-205ENST00000415298 MEGF6O75095 1541 aa24.75■■□□□ 1.55
AP1S3-205ENST00000415298 SLIT2O94813 1529 aa24.75■■□□□ 1.55
AP1S3-205ENST00000415298 RAPGEF4Q8WZA2 1011 aa24.75■■□□□ 1.55
AP1S3-205ENST00000415298 GBP4Q96PP9 640 aa24.75■■□□□ 1.55
AP1S3-205ENST00000415298 DLG5Q8TDM6 1919 aa24.75■■□□□ 1.55
AP1S3-205ENST00000415298 CRB1P82279 1406 aa24.74■■□□□ 1.55
AP1S3-205ENST00000415298 BRPF1P55201 1214 aaPredicted RBP24.74■■□□□ 1.55
AP1S3-205ENST00000415298 NCAPGQ9BPX3 1015 aa24.74■■□□□ 1.55
AP1S3-205ENST00000415298 NBPF20Q3BBV1 942 aa24.73■■□□□ 1.55
AP1S3-205ENST00000415298 CEP83Q9Y592 693 aa24.73■■□□□ 1.55
AP1S3-205ENST00000415298 GTF2A1P52655 376 aaPredicted RBP24.73■■□□□ 1.55
AP1S3-205ENST00000415298 KIAA2012Q0VF49 1180 aa24.72■■□□□ 1.55
AP1S3-205ENST00000415298 MCM10Q7L590 875 aa24.72■■□□□ 1.55
AP1S3-205ENST00000415298 SMC4Q9NTJ3 1288 aa24.72■■□□□ 1.55
AP1S3-205ENST00000415298 BCL9LQ86UU0 1499 aa24.72■■□□□ 1.55
AP1S3-205ENST00000415298 TERF2Q15554 542 aa24.72■■□□□ 1.55
AP1S3-205ENST00000415298 ANKRD7Q92527 254 aa24.72■■□□□ 1.55
AP1S3-205ENST00000415298 CCDC27Q2M243 656 aa24.71■■□□□ 1.55
AP1S3-205ENST00000415298 FNBP4Q8N3X1 1017 aaPredicted RBP24.71■■□□□ 1.55
AP1S3-205ENST00000415298 TATP17735 454 aaPredicted RBP24.71■■□□□ 1.55
AP1S3-205ENST00000415298 CT47A1Q5JQC4 288 aaPredicted RBP24.71■■□□□ 1.55
AP1S3-205ENST00000415298 UNC5CLQ8IV45 518 aa24.71■■□□□ 1.55
AP1S3-205ENST00000415298 GOLGA2Q08379 1002 aa24.7■■□□□ 1.54
AP1S3-205ENST00000415298 NOP2P46087 812 aaKnown RBP24.7■■□□□ 1.54
AP1S3-205ENST00000415298 NRAPQ86VF7 1730 aa24.7■■□□□ 1.54
AP1S3-205ENST00000415298 PLEKHO1Q53GL0 409 aaPredicted RBP24.69■■□□□ 1.54
AP1S3-205ENST00000415298 HSP90AB3PQ58FF7 597 aa24.69■■□□□ 1.54
AP1S3-205ENST00000415298 GAS2L2Q8NHY3 880 aa24.69■■□□□ 1.54
AP1S3-205ENST00000415298 USP21Q9UK80 565 aa24.69■■□□□ 1.54
AP1S3-205ENST00000415298 CTR9Q6PD62 1173 aa24.69■■□□□ 1.54
AP1S3-205ENST00000415298 IL2RBP14784 551 aa24.68■■□□□ 1.54
AP1S3-205ENST00000415298 ZNF530Q6P9A1 599 aaPredicted RBP24.68■■□□□ 1.54
AP1S3-205ENST00000415298 CLSTN1O94985 981 aa24.67■■□□□ 1.54
AP1S3-205ENST00000415298 SATB1Q01826 763 aa24.67■■□□□ 1.54
AP1S3-205ENST00000415298 AFF2P51816 1311 aa24.66■■□□□ 1.54
AP1S3-205ENST00000415298 SPATA31A1Q5TZJ5 1347 aa24.66■■□□□ 1.54
AP1S3-205ENST00000415298 CCDC172P0C7W6 258 aa24.66■■□□□ 1.54
AP1S3-205ENST00000415298 AMOTQ4VCS5 1084 aa24.66■■□□□ 1.54
AP1S3-205ENST00000415298 NWD2Q9ULI1 1742 aa24.66■■□□□ 1.54
AP1S3-205ENST00000415298 GNAT3A8MTJ3 354 aa24.65■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms