RNA–Protein interactions for RNA: ENST00000413517.1

HERPUD2-203, Transcript of HERPUD family member 2, humanhuman

TSL 5

Gene HERPUD2, Length 808 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2-203ENST00000413517 U2AF1Q01081 240 aaKnown RBP eCLIP11.45□□□□□ -0.58
HERPUD2-203ENST00000413517 IL17REQ8NFR9 667 aa11.45□□□□□ -0.58
HERPUD2-203ENST00000413517 SLC16A10Q8TF71 515 aa11.45□□□□□ -0.58
HERPUD2-203ENST00000413517 RBM42Q9BTD8 480 aaKnown RBP11.45□□□□□ -0.58
HERPUD2-203ENST00000413517 PPP1R1BQ9UD71 204 aaPredicted RBP11.45□□□□□ -0.58
HERPUD2-203ENST00000413517 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.44□□□□□ -0.58
HERPUD2-203ENST00000413517 STK25O00506 426 aa11.44□□□□□ -0.58
HERPUD2-203ENST00000413517 PTCD1O75127 700 aaKnown RBP11.44□□□□□ -0.58
HERPUD2-203ENST00000413517 SLC39A6Q13433 755 aa11.44□□□□□ -0.58
HERPUD2-203ENST00000413517 MSL1Q68DK7 614 aa11.44□□□□□ -0.58
HERPUD2-203ENST00000413517 AK7Q96M32 723 aa11.44□□□□□ -0.58
HERPUD2-203ENST00000413517 FHDC1Q9C0D6 1143 aaPredicted RBP11.44□□□□□ -0.58
HERPUD2-203ENST00000413517 CEMIPQ8WUJ3 1361 aa11.43□□□□□ -0.58
HERPUD2-203ENST00000413517 GNPATO15228 680 aa11.43□□□□□ -0.58
HERPUD2-203ENST00000413517 PHF14O94880 888 aa11.43□□□□□ -0.58
HERPUD2-203ENST00000413517 GAS2L2Q8NHY3 880 aa11.43□□□□□ -0.58
HERPUD2-203ENST00000413517 RYDENQ9NUL5 291 aaKnown RBP11.43□□□□□ -0.58
HERPUD2-203ENST00000413517 NUDCQ9Y266 331 aa11.43□□□□□ -0.58
HERPUD2-203ENST00000413517 GNAT3A8MTJ3 354 aa11.42□□□□□ -0.58
HERPUD2-203ENST00000413517 KDM3BQ7LBC6 1761 aa11.41□□□□□ -0.58
HERPUD2-203ENST00000413517 CNTNAP4Q9C0A0 1308 aa11.41□□□□□ -0.58
HERPUD2-203ENST00000413517 KIAA1551Q9HCM1 1747 aa11.41□□□□□ -0.58
HERPUD2-203ENST00000413517 FCHSD2O94868 740 aa11.41□□□□□ -0.58
HERPUD2-203ENST00000413517 SSFA2P28290 1259 aa11.41□□□□□ -0.58
HERPUD2-203ENST00000413517 RALBP1Q15311 655 aa11.41□□□□□ -0.58
HERPUD2-203ENST00000413517 DNAJC10Q8IXB1 793 aa11.41□□□□□ -0.58
HERPUD2-203ENST00000413517 SYT17Q9BSW7 474 aa11.41□□□□□ -0.58
HERPUD2-203ENST00000413517 KIF13BQ9NQT8 1826 aa11.41□□□□□ -0.58
HERPUD2-203ENST00000413517 CHD4Q14839 1912 aa11.41□□□□□ -0.58
HERPUD2-203ENST00000413517 ZEB1P37275 1124 aaPredicted RBP11.4□□□□□ -0.58
HERPUD2-203ENST00000413517 CRKLP46109 303 aaKnown RBP11.4□□□□□ -0.58
HERPUD2-203ENST00000413517 RC3H1Q5TC82 1133 aaKnown RBP11.4□□□□□ -0.58
HERPUD2-203ENST00000413517 FLAD1Q8NFF5 587 aa11.4□□□□□ -0.58
HERPUD2-203ENST00000413517 PLEKHF1Q96S99 279 aa11.4□□□□□ -0.58
HERPUD2-203ENST00000413517 MYBBP1AQ9BQG0 1328 aaKnown RBP11.39□□□□□ -0.59
HERPUD2-203ENST00000413517 KCNQ3O43525 872 aa11.39□□□□□ -0.59
HERPUD2-203ENST00000413517 DCTN1Q14203 1278 aa11.39□□□□□ -0.59
HERPUD2-203ENST00000413517 INTS5Q6P9B9 1019 aaKnown RBP11.39□□□□□ -0.59
HERPUD2-203ENST00000413517 MCM10Q7L590 875 aa11.39□□□□□ -0.59
HERPUD2-203ENST00000413517 AFDNP55196 1824 aaKnown RBP11.39□□□□□ -0.59
HERPUD2-203ENST00000413517 RPS6KA4O75676 772 aa11.38□□□□□ -0.59
HERPUD2-203ENST00000413517 POLD1P28340 1107 aa11.38□□□□□ -0.59
HERPUD2-203ENST00000413517 NLGN2Q8NFZ4 835 aa11.38□□□□□ -0.59
HERPUD2-203ENST00000413517 LAMB4A4D0S4 1761 aa11.38□□□□□ -0.59
HERPUD2-203ENST00000413517 N4BP2Q86UW6 1770 aaPredicted RBP11.38□□□□□ -0.59
HERPUD2-203ENST00000413517 CYP19A1P11511 503 aaPredicted RBP11.37□□□□□ -0.59
HERPUD2-203ENST00000413517 TEFQ10587 303 aa11.37□□□□□ -0.59
HERPUD2-203ENST00000413517 ARHGEF1Q92888 912 aaKnown RBP11.37□□□□□ -0.59
HERPUD2-203ENST00000413517 ZNF496Q96IT1 587 aaPredicted RBP11.37□□□□□ -0.59
HERPUD2-203ENST00000413517 PRKRIP1Q9H875 184 aaPredicted RBP11.37□□□□□ -0.59
HERPUD2-203ENST00000413517 RTCBQ9Y3I0 505 aaKnown RBP11.37□□□□□ -0.59
HERPUD2-203ENST00000413517 BRCA1P38398 1863 aaKnown RBP11.37□□□□□ -0.59
HERPUD2-203ENST00000413517 SCN7AQ01118 1682 aa11.36□□□□□ -0.59
HERPUD2-203ENST00000413517 BRPF1P55201 1214 aaPredicted RBP11.36□□□□□ -0.59
HERPUD2-203ENST00000413517 ZNF790Q6PG37 636 aa11.36□□□□□ -0.59
HERPUD2-203ENST00000413517 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.36□□□□□ -0.59
HERPUD2-203ENST00000413517 CCDC87Q9NVE4 849 aa11.36□□□□□ -0.59
HERPUD2-203ENST00000413517 SRP68Q9UHB9 627 aaKnown RBP11.36□□□□□ -0.59
HERPUD2-203ENST00000413517 ZBTB1Q9Y2K1 713 aa11.36□□□□□ -0.59
HERPUD2-203ENST00000413517 HEG1Q9ULI3 1381 aa11.36□□□□□ -0.59
HERPUD2-203ENST00000413517 BCORQ6W2J9 1755 aa11.36□□□□□ -0.59
HERPUD2-203ENST00000413517 SOS1Q07889 1333 aaPredicted RBP11.35□□□□□ -0.59
HERPUD2-203ENST00000413517 GOLGB1Q14789 3259 aaKnown RBP11.35□□□□□ -0.59
HERPUD2-203ENST00000413517 GYS1P13807 737 aa11.35□□□□□ -0.59
HERPUD2-203ENST00000413517 HMGB2P26583 209 aaKnown RBP11.35□□□□□ -0.59
HERPUD2-203ENST00000413517 NUBP1P53384 320 aa11.35□□□□□ -0.59
HERPUD2-203ENST00000413517 THUMPD2Q9BTF0 503 aaKnown RBP11.35□□□□□ -0.59
HERPUD2-203ENST00000413517 PRAMEF22A3QJZ6 481 aa11.34□□□□□ -0.59
HERPUD2-203ENST00000413517 NFE2L2Q16236 605 aa11.34□□□□□ -0.59
HERPUD2-203ENST00000413517 TRAPPC3LQ5T215 181 aa11.34□□□□□ -0.59
HERPUD2-203ENST00000413517 DCAF8Q5TAQ9 597 aa11.34□□□□□ -0.59
HERPUD2-203ENST00000413517 NRXN2Q9P2S2 1712 aa11.34□□□□□ -0.59
HERPUD2-203ENST00000413517 USP42Q9H9J4 1324 aaKnown RBP11.34□□□□□ -0.59
HERPUD2-203ENST00000413517 COL15A1P39059 1388 aa11.33□□□□□ -0.6
HERPUD2-203ENST00000413517 BTBD11A6QL63 1104 aa11.33□□□□□ -0.6
HERPUD2-203ENST00000413517 HTATSF1O43719 755 aaKnown RBP11.33□□□□□ -0.6
HERPUD2-203ENST00000413517 MMP10P09238 476 aa11.33□□□□□ -0.6
HERPUD2-203ENST00000413517 CCDC184Q52MB2 194 aa11.33□□□□□ -0.6
HERPUD2-203ENST00000413517 TTC5Q8N0Z6 440 aa11.33□□□□□ -0.6
HERPUD2-203ENST00000413517 ANKRD31Q8N7Z5 1873 aa11.32□□□□□ -0.6
HERPUD2-203ENST00000413517 ZNF316A6NFI3 1004 aaPredicted RBP11.32□□□□□ -0.6
HERPUD2-203ENST00000413517 RFC4P35249 363 aa11.32□□□□□ -0.6
HERPUD2-203ENST00000413517 CCDC146Q8IYE0 955 aa11.32□□□□□ -0.6
HERPUD2-203ENST00000413517 RTF1Q92541 710 aaKnown RBP11.32□□□□□ -0.6
HERPUD2-203ENST00000413517 MIS18AQ9NYP9 233 aa11.32□□□□□ -0.6
HERPUD2-203ENST00000413517 C10orf71Q711Q0 1435 aa11.32□□□□□ -0.6
HERPUD2-203ENST00000413517 UTRNP46939 3433 aa11.31□□□□□ -0.6
HERPUD2-203ENST00000413517 YBX3P16989 372 aaKnown RBP eCLIP11.31□□□□□ -0.6
HERPUD2-203ENST00000413517 CANXP27824 592 aaKnown RBP11.31□□□□□ -0.6
HERPUD2-203ENST00000413517 DDR1Q08345 913 aa11.31□□□□□ -0.6
HERPUD2-203ENST00000413517 KCNV2Q8TDN2 545 aa11.31□□□□□ -0.6
HERPUD2-203ENST00000413517 FMNL2Q96PY5 1086 aa11.31□□□□□ -0.6
HERPUD2-203ENST00000413517 BCL2L12Q9HB09 334 aa11.31□□□□□ -0.6
HERPUD2-203ENST00000413517 USP16Q9Y5T5 823 aa11.31□□□□□ -0.6
HERPUD2-203ENST00000413517 STK24Q9Y6E0 443 aa11.31□□□□□ -0.6
HERPUD2-203ENST00000413517 PXDNLA1KZ92 1463 aa11.31□□□□□ -0.6
HERPUD2-203ENST00000413517 A1BGP04217 495 aa11.3□□□□□ -0.6
HERPUD2-203ENST00000413517 TMPOP42166 694 aaKnown RBP11.3□□□□□ -0.6
HERPUD2-203ENST00000413517 PIP4K2AP48426 406 aaPredicted RBP11.3□□□□□ -0.6
HERPUD2-203ENST00000413517 EIF5P55010 431 aaKnown RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms