RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 ANP32CO43423 234 aa8.4□□□□□ -1.06
USP54-202ENST00000413442 RIPK4P57078 832 aa8.4□□□□□ -1.06
USP54-202ENST00000413442 CLEC4GQ6UXB4 293 aa8.4□□□□□ -1.06
USP54-202ENST00000413442 ZNF496Q96IT1 587 aaPredicted RBP8.4□□□□□ -1.06
USP54-202ENST00000413442 NARFQ9UHQ1 456 aa8.4□□□□□ -1.06
USP54-202ENST00000413442 PARP3Q9Y6F1 533 aa8.4□□□□□ -1.06
USP54-202ENST00000413442 ERBB4Q15303 1308 aa8.39□□□□□ -1.07
USP54-202ENST00000413442 GYS1P13807 737 aa8.39□□□□□ -1.07
USP54-202ENST00000413442 TMPOP42166 694 aaKnown RBP8.39□□□□□ -1.07
USP54-202ENST00000413442 EIF5P55010 431 aaKnown RBP8.39□□□□□ -1.07
USP54-202ENST00000413442 SLC39A6Q13433 755 aa8.39□□□□□ -1.07
USP54-202ENST00000413442 DNAJC10Q8IXB1 793 aa8.39□□□□□ -1.07
USP54-202ENST00000413442 KCPQ6ZWJ8 1503 aa8.39□□□□□ -1.07
USP54-202ENST00000413442 TJP1Q07157 1748 aa8.38□□□□□ -1.07
USP54-202ENST00000413442 SOS1Q07889 1333 aaPredicted RBP8.38□□□□□ -1.07
USP54-202ENST00000413442 USP42Q9H9J4 1324 aaKnown RBP8.38□□□□□ -1.07
USP54-202ENST00000413442 PHF14O94880 888 aa8.38□□□□□ -1.07
USP54-202ENST00000413442 TM4SF1P30408 202 aa8.38□□□□□ -1.07
USP54-202ENST00000413442 ADAMTS8Q9UP79 889 aa8.38□□□□□ -1.07
USP54-202ENST00000413442 CHD4Q14839 1912 aa8.37□□□□□ -1.07
USP54-202ENST00000413442 MMP10P09238 476 aa8.37□□□□□ -1.07
USP54-202ENST00000413442 MCM10Q7L590 875 aa8.37□□□□□ -1.07
USP54-202ENST00000413442 ZNF652Q9Y2D9 606 aa8.37□□□□□ -1.07
USP54-202ENST00000413442 KIF13BQ9NQT8 1826 aa8.36□□□□□ -1.07
USP54-202ENST00000413442 GIGYF1O75420 1035 aaPredicted RBP8.36□□□□□ -1.07
USP54-202ENST00000413442 HOXB7P09629 217 aa8.36□□□□□ -1.07
USP54-202ENST00000413442 GPR162Q16538 588 aa8.36□□□□□ -1.07
USP54-202ENST00000413442 CCDC27Q2M243 656 aa8.36□□□□□ -1.07
USP54-202ENST00000413442 COL15A1P39059 1388 aa8.35□□□□□ -1.07
USP54-202ENST00000413442 ERVV-1B6SEH8 477 aa8.35□□□□□ -1.07
USP54-202ENST00000413442 CHL1O00533 1208 aa8.35□□□□□ -1.07
USP54-202ENST00000413442 CANXP27824 592 aaKnown RBP8.35□□□□□ -1.07
USP54-202ENST00000413442 EIF4A1P60842 406 aaKnown RBP8.35□□□□□ -1.07
USP54-202ENST00000413442 CFAP44Q96MT7 982 aa8.35□□□□□ -1.07
USP54-202ENST00000413442 ZBTB1Q9Y2K1 713 aa8.35□□□□□ -1.07
USP54-202ENST00000413442 USP16Q9Y5T5 823 aa8.35□□□□□ -1.07
USP54-202ENST00000413442 GNAI1P63096 354 aa8.34□□□□□ -1.07
USP54-202ENST00000413442 DCTN1Q14203 1278 aa8.34□□□□□ -1.07
USP54-202ENST00000413442 USPL1Q5W0Q7 1092 aa8.34□□□□□ -1.07
USP54-202ENST00000413442 SETDB2Q96T68 719 aa8.34□□□□□ -1.07
USP54-202ENST00000413442 TSPYL4Q9UJ04 414 aa8.34□□□□□ -1.07
USP54-202ENST00000413442 KDM3BQ7LBC6 1761 aa8.34□□□□□ -1.07
USP54-202ENST00000413442 C4AP0C0L4 1744 aa8.34□□□□□ -1.07
USP54-202ENST00000413442 SERPINB2P05120 415 aa8.33□□□□□ -1.08
USP54-202ENST00000413442 PDE6BP35913 854 aa8.33□□□□□ -1.08
USP54-202ENST00000413442 MSL1Q68DK7 614 aa8.33□□□□□ -1.08
USP54-202ENST00000413442 TPTE2Q6XPS3 522 aa8.33□□□□□ -1.08
USP54-202ENST00000413442 AMIGO3Q86WK7 504 aa8.33□□□□□ -1.08
USP54-202ENST00000413442 DZIP3Q86Y13 1208 aaKnown RBP8.33□□□□□ -1.08
USP54-202ENST00000413442 PIM2Q9P1W9 311 aa8.33□□□□□ -1.08
USP54-202ENST00000413442 TRIM35Q9UPQ4 493 aa8.33□□□□□ -1.08
USP54-202ENST00000413442 POLRMTO00411 1230 aaKnown RBP8.32□□□□□ -1.08
USP54-202ENST00000413442 A1BGP04217 495 aa8.32□□□□□ -1.08
USP54-202ENST00000413442 FKBP8Q14318 412 aa8.32□□□□□ -1.08
USP54-202ENST00000413442 KLHL34Q8N239 644 aa8.32□□□□□ -1.08
USP54-202ENST00000413442 BRIP1Q9BX63 1249 aa8.32□□□□□ -1.08
USP54-202ENST00000413442 IFT57Q9NWB7 429 aa8.32□□□□□ -1.08
USP54-202ENST00000413442 IL16Q14005 1332 aa8.31□□□□□ -1.08
USP54-202ENST00000413442 LAMB4A4D0S4 1761 aa8.31□□□□□ -1.08
USP54-202ENST00000413442 H0YIN7 160 aa8.31□□□□□ -1.08
USP54-202ENST00000413442 KCNQ3O43525 872 aa8.31□□□□□ -1.08
USP54-202ENST00000413442 ZNF853P0CG23 659 aa8.31□□□□□ -1.08
USP54-202ENST00000413442 YY1P25490 414 aa8.31□□□□□ -1.08
USP54-202ENST00000413442 NFIXQ14938 502 aa8.31□□□□□ -1.08
USP54-202ENST00000413442 NEUROD2Q15784 382 aa8.31□□□□□ -1.08
USP54-202ENST00000413442 GRIPAP1Q4V328 841 aa8.31□□□□□ -1.08
USP54-202ENST00000413442 HSP90AB3PQ58FF7 597 aa8.31□□□□□ -1.08
USP54-202ENST00000413442 WDR63Q8IWG1 891 aa8.31□□□□□ -1.08
USP54-202ENST00000413442 NYXQ9GZU5 481 aa8.31□□□□□ -1.08
USP54-202ENST00000413442 MRS2Q9HD23 443 aa8.31□□□□□ -1.08
USP54-202ENST00000413442 DBF4Q9UBU7 674 aaPredicted RBP8.31□□□□□ -1.08
USP54-202ENST00000413442 CARMIL3Q8ND23 1372 aa8.31□□□□□ -1.08
USP54-202ENST00000413442 NRXN2Q9P2S2 1712 aa8.31□□□□□ -1.08
USP54-202ENST00000413442 RNF123Q5XPI4 1314 aa8.3□□□□□ -1.08
USP54-202ENST00000413442 C10orf71Q711Q0 1435 aa8.3□□□□□ -1.08
USP54-202ENST00000413442 SRCAPQ6ZRS2 3230 aa8.3□□□□□ -1.08
USP54-202ENST00000413442 APAF1O14727 1248 aa8.3□□□□□ -1.08
USP54-202ENST00000413442 CAMTA2O94983 1202 aa8.3□□□□□ -1.08
USP54-202ENST00000413442 MAPK8IP2Q13387 824 aaPredicted RBP8.3□□□□□ -1.08
USP54-202ENST00000413442 PARP10Q53GL7 1025 aa8.3□□□□□ -1.08
USP54-202ENST00000413442 KIF6Q6ZMV9 814 aa8.3□□□□□ -1.08
USP54-202ENST00000413442 NLGN2Q8NFZ4 835 aa8.3□□□□□ -1.08
USP54-202ENST00000413442 BCL2L12Q9HB09 334 aa8.3□□□□□ -1.08
USP54-202ENST00000413442 DDX21Q9NR30 783 aaKnown RBP eCLIP8.3□□□□□ -1.08
USP54-202ENST00000413442 HYPKQ9NX55 129 aa8.3□□□□□ -1.08
USP54-202ENST00000413442 MIS18AQ9NYP9 233 aa8.3□□□□□ -1.08
USP54-202ENST00000413442 SRP68Q9UHB9 627 aaKnown RBP8.3□□□□□ -1.08
USP54-202ENST00000413442 TBC1D2BQ9UPU7 963 aa8.3□□□□□ -1.08
USP54-202ENST00000413442 CACNA1FO60840 1977 aa8.3□□□□□ -1.08
USP54-202ENST00000413442 MAP3K15Q6ZN16 1313 aa8.29□□□□□ -1.08
USP54-202ENST00000413442 NBPF26B4DH59 902 aa8.29□□□□□ -1.08
USP54-202ENST00000413442 HSP90B1P14625 803 aaKnown RBP8.29□□□□□ -1.08
USP54-202ENST00000413442 ST5P78524 1137 aa8.29□□□□□ -1.08
USP54-202ENST00000413442 DALRD3Q5D0E6 543 aaKnown RBP8.29□□□□□ -1.08
USP54-202ENST00000413442 SOGA3Q5TF21 947 aa8.29□□□□□ -1.08
USP54-202ENST00000413442 NBPF10Q6P3W6 841 aaKnown RBP8.29□□□□□ -1.08
USP54-202ENST00000413442 GIGYF2Q6Y7W6 1299 aaKnown RBP8.29□□□□□ -1.08
USP54-202ENST00000413442 PPP1R42Q7Z4L9 355 aa8.29□□□□□ -1.08
USP54-202ENST00000413442 CCDC146Q8IYE0 955 aa8.29□□□□□ -1.08
USP54-202ENST00000413442 NBPF15Q8N660 670 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms