RNA–Protein interactions for RNA: ENST00000413374.1

NCKIPSD-202, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 3

Gene NCKIPSD, Length 725 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-202ENST00000413374 USP16Q9Y5T5 823 aa13.48□□□□□ -0.25
NCKIPSD-202ENST00000413374 HEG1Q9ULI3 1381 aa13.47□□□□□ -0.25
NCKIPSD-202ENST00000413374 A0A0G2JLW4 131 aa13.47□□□□□ -0.25
NCKIPSD-202ENST00000413374 KCPQ6ZWJ8 1503 aa13.47□□□□□ -0.25
NCKIPSD-202ENST00000413374 SCN11AQ9UI33 1791 aa13.47□□□□□ -0.25
NCKIPSD-202ENST00000413374 UBR3Q6ZT12 1888 aa13.46□□□□□ -0.25
NCKIPSD-202ENST00000413374 RIPK4P57078 832 aa13.46□□□□□ -0.25
NCKIPSD-202ENST00000413374 NEUROD2Q15784 382 aa13.46□□□□□ -0.25
NCKIPSD-202ENST00000413374 BICDL1Q6ZP65 573 aa13.46□□□□□ -0.25
NCKIPSD-202ENST00000413374 TEX13AQ9BXU3 409 aaPredicted RBP13.46□□□□□ -0.25
NCKIPSD-202ENST00000413374 PRKRIP1Q9H875 184 aaPredicted RBP13.46□□□□□ -0.25
NCKIPSD-202ENST00000413374 TBC1D2BQ9UPU7 963 aa13.46□□□□□ -0.25
NCKIPSD-202ENST00000413374 RRP7AQ9Y3A4 280 aaKnown RBP13.46□□□□□ -0.25
NCKIPSD-202ENST00000413374 DDR1Q08345 913 aa13.45□□□□□ -0.26
NCKIPSD-202ENST00000413374 WDR43Q15061 677 aaKnown RBP eCLIP13.45□□□□□ -0.26
NCKIPSD-202ENST00000413374 BCL2L12Q9HB09 334 aa13.45□□□□□ -0.26
NCKIPSD-202ENST00000413374 NARFQ9UHQ1 456 aa13.45□□□□□ -0.26
NCKIPSD-202ENST00000413374 GRIN3BO60391 1043 aa13.44□□□□□ -0.26
NCKIPSD-202ENST00000413374 SNRPA1P09661 255 aaKnown RBP13.44□□□□□ -0.26
NCKIPSD-202ENST00000413374 TM4SF1P30408 202 aa13.44□□□□□ -0.26
NCKIPSD-202ENST00000413374 EIF5P55010 431 aaKnown RBP13.44□□□□□ -0.26
NCKIPSD-202ENST00000413374 ADAMTS8Q9UP79 889 aa13.44□□□□□ -0.26
NCKIPSD-202ENST00000413374 COL15A1P39059 1388 aa13.44□□□□□ -0.26
NCKIPSD-202ENST00000413374 ZNF316A6NFI3 1004 aaPredicted RBP13.43□□□□□ -0.26
NCKIPSD-202ENST00000413374 POLRMTO00411 1230 aaKnown RBP13.43□□□□□ -0.26
NCKIPSD-202ENST00000413374 DPEP1P16444 411 aa13.43□□□□□ -0.26
NCKIPSD-202ENST00000413374 NFIXQ14938 502 aa13.43□□□□□ -0.26
NCKIPSD-202ENST00000413374 NPM2Q86SE8 214 aaKnown RBP13.43□□□□□ -0.26
NCKIPSD-202ENST00000413374 TJP1Q07157 1748 aa13.42□□□□□ -0.26
NCKIPSD-202ENST00000413374 COL24A1Q17RW2 1714 aa13.42□□□□□ -0.26
NCKIPSD-202ENST00000413374 A0A087WZG4 1122 aa13.42□□□□□ -0.26
NCKIPSD-202ENST00000413374 TMPOP42166 694 aaKnown RBP13.42□□□□□ -0.26
NCKIPSD-202ENST00000413374 TGFB2P61812 414 aa13.42□□□□□ -0.26
NCKIPSD-202ENST00000413374 NGEFQ8N5V2 710 aa13.42□□□□□ -0.26
NCKIPSD-202ENST00000413374 BCS1LQ9Y276 419 aa13.42□□□□□ -0.26
NCKIPSD-202ENST00000413374 ADAMTS7Q9UKP4 1686 aa13.42□□□□□ -0.26
NCKIPSD-202ENST00000413374 UTRNP46939 3433 aa13.42□□□□□ -0.26
NCKIPSD-202ENST00000413374 MYH14Q7Z406 1995 aaKnown RBP13.41□□□□□ -0.26
NCKIPSD-202ENST00000413374 SERPINB2P05120 415 aa13.41□□□□□ -0.26
NCKIPSD-202ENST00000413374 IL6STP40189 918 aaPredicted RBP13.41□□□□□ -0.26
NCKIPSD-202ENST00000413374 TBC1D9BQ66K14 1250 aa13.41□□□□□ -0.26
NCKIPSD-202ENST00000413374 CCDC24Q8N4L8 307 aa13.41□□□□□ -0.26
NCKIPSD-202ENST00000413374 PNISRQ8TF01 805 aaKnown RBP13.41□□□□□ -0.26
NCKIPSD-202ENST00000413374 COL5A3P25940 1745 aaPredicted RBP13.41□□□□□ -0.26
NCKIPSD-202ENST00000413374 ZNF831Q5JPB2 1677 aa13.4□□□□□ -0.26
NCKIPSD-202ENST00000413374 CICQ96RK0 1608 aaPredicted RBP13.4□□□□□ -0.26
NCKIPSD-202ENST00000413374 CHRNA5P30532 468 aa13.4□□□□□ -0.26
NCKIPSD-202ENST00000413374 EIF4A1P60842 406 aaKnown RBP13.4□□□□□ -0.26
NCKIPSD-202ENST00000413374 DZIP3Q86Y13 1208 aaKnown RBP13.4□□□□□ -0.26
NCKIPSD-202ENST00000413374 ZNF784Q8NCA9 323 aaPredicted RBP13.4□□□□□ -0.26
NCKIPSD-202ENST00000413374 LAS1LQ9Y4W2 734 aaKnown RBP13.4□□□□□ -0.26
NCKIPSD-202ENST00000413374 SENP3-EIF4A1A0A087X0R7 540 aa13.39□□□□□ -0.27
NCKIPSD-202ENST00000413374 NBPF26B4DH59 902 aa13.39□□□□□ -0.27
NCKIPSD-202ENST00000413374 CCDC184Q52MB2 194 aa13.39□□□□□ -0.27
NCKIPSD-202ENST00000413374 NBPF10Q6P3W6 841 aaKnown RBP13.39□□□□□ -0.27
NCKIPSD-202ENST00000413374 NBPF15Q8N660 670 aa13.39□□□□□ -0.27
NCKIPSD-202ENST00000413374 RUNDC1Q96C34 613 aa13.39□□□□□ -0.27
NCKIPSD-202ENST00000413374 TSPYL4Q9UJ04 414 aa13.39□□□□□ -0.27
NCKIPSD-202ENST00000413374 GIGYF1O75420 1035 aaPredicted RBP13.38□□□□□ -0.27
NCKIPSD-202ENST00000413374 CAMTA2O94983 1202 aa13.38□□□□□ -0.27
NCKIPSD-202ENST00000413374 KCNA3P22001 575 aa13.38□□□□□ -0.27
NCKIPSD-202ENST00000413374 ARHGAP27Q6ZUM4 889 aa13.38□□□□□ -0.27
NCKIPSD-202ENST00000413374 PXDNLA1KZ92 1463 aa13.37□□□□□ -0.27
NCKIPSD-202ENST00000413374 MYL6BP14649 208 aa13.37□□□□□ -0.27
NCKIPSD-202ENST00000413374 PIM2Q9P1W9 311 aa13.37□□□□□ -0.27
NCKIPSD-202ENST00000413374 C10orf71Q711Q0 1435 aa13.37□□□□□ -0.27
NCKIPSD-202ENST00000413374 FAM177BA6PVY3 158 aa13.36□□□□□ -0.27
NCKIPSD-202ENST00000413374 NPHP1O15259 732 aa13.36□□□□□ -0.27
NCKIPSD-202ENST00000413374 EIF2S2P20042 333 aaKnown RBP13.36□□□□□ -0.27
NCKIPSD-202ENST00000413374 LMOD3Q0VAK6 560 aa13.36□□□□□ -0.27
NCKIPSD-202ENST00000413374 SETDB2Q96T68 719 aa13.36□□□□□ -0.27
NCKIPSD-202ENST00000413374 TRIM35Q9UPQ4 493 aa13.36□□□□□ -0.27
NCKIPSD-202ENST00000413374 APAF1O14727 1248 aa13.35□□□□□ -0.27
NCKIPSD-202ENST00000413374 NECTIN2Q92692 538 aa13.35□□□□□ -0.27
NCKIPSD-202ENST00000413374 HLFQ16534 295 aa13.34□□□□□ -0.27
NCKIPSD-202ENST00000413374 DALRD3Q5D0E6 543 aaKnown RBP13.34□□□□□ -0.27
NCKIPSD-202ENST00000413374 C2CD5Q86YS7 1000 aa13.34□□□□□ -0.27
NCKIPSD-202ENST00000413374 ZNF526Q8TF50 670 aaPredicted RBP13.34□□□□□ -0.27
NCKIPSD-202ENST00000413374 UBR2Q8IWV8 1755 aa13.34□□□□□ -0.27
NCKIPSD-202ENST00000413374 GOLGB1Q14789 3259 aaKnown RBP13.33□□□□□ -0.27
NCKIPSD-202ENST00000413374 C4AP0C0L4 1744 aa13.33□□□□□ -0.27
NCKIPSD-202ENST00000413374 SIPA1L3O60292 1781 aaPredicted RBP13.33□□□□□ -0.28
NCKIPSD-202ENST00000413374 ANP32CO43423 234 aa13.33□□□□□ -0.28
NCKIPSD-202ENST00000413374 KRT24Q2M2I5 525 aa13.33□□□□□ -0.28
NCKIPSD-202ENST00000413374 PRR5LQ6MZQ0 368 aa13.33□□□□□ -0.28
NCKIPSD-202ENST00000413374 VIRMAQ69YN4 1812 aaKnown RBP13.33□□□□□ -0.28
NCKIPSD-202ENST00000413374 H0YIN7 160 aa13.32□□□□□ -0.28
NCKIPSD-202ENST00000413374 ANXA1P04083 346 aa13.32□□□□□ -0.28
NCKIPSD-202ENST00000413374 TTLL7Q6ZT98 887 aa13.32□□□□□ -0.28
NCKIPSD-202ENST00000413374 ZNF622Q969S3 477 aaKnown RBP eCLIP13.32□□□□□ -0.282e-7■■■■■ 28.3
NCKIPSD-202ENST00000413374 ZNF219Q9P2Y4 722 aaPredicted RBP13.32□□□□□ -0.28
NCKIPSD-202ENST00000413374 NIP7Q9Y221 180 aaKnown RBP eCLIP13.32□□□□□ -0.28
NCKIPSD-202ENST00000413374 CARMIL3Q8ND23 1372 aa13.32□□□□□ -0.28
NCKIPSD-202ENST00000413374 CHL1O00533 1208 aa13.31□□□□□ -0.28
NCKIPSD-202ENST00000413374 NBPF5PQ86XG9 351 aaPredicted RBP13.31□□□□□ -0.28
NCKIPSD-202ENST00000413374 CNBD1Q8NA66 436 aa13.31□□□□□ -0.28
NCKIPSD-202ENST00000413374 ZBTB3Q9H5J0 574 aa13.31□□□□□ -0.28
NCKIPSD-202ENST00000413374 ZNF652Q9Y2D9 606 aa13.31□□□□□ -0.28
NCKIPSD-202ENST00000413374 CLEC4GQ6UXB4 293 aa13.3□□□□□ -0.28
NCKIPSD-202ENST00000413374 BRIP1Q9BX63 1249 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms