RNA–Protein interactions for RNA: ENST00000409531.5

TSPAN4-208, Transcript of tetraspanin 4, humanhuman

TSL 5 BASIC

Gene TSPAN4, Length 1,339 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-208ENST00000409531 SGIP1Q9BQI5 828 aa21.42■■□□□ 1.02
TSPAN4-208ENST00000409531 ZNF831Q5JPB2 1677 aa21.42■■□□□ 1.02
TSPAN4-208ENST00000409531 VSIG10Q8N0Z9 540 aa21.41■■□□□ 1.02
TSPAN4-208ENST00000409531 RTCBQ9Y3I0 505 aaKnown RBP21.41■■□□□ 1.02
TSPAN4-208ENST00000409531 CNTNAP4Q9C0A0 1308 aa21.41■■□□□ 1.02
TSPAN4-208ENST00000409531 PHF14O94880 888 aa21.4■■□□□ 1.02
TSPAN4-208ENST00000409531 SMIM5Q71RC9 77 aa21.4■■□□□ 1.02
TSPAN4-208ENST00000409531 CDCA7LQ96GN5 454 aa21.4■■□□□ 1.02
TSPAN4-208ENST00000409531 SPINK5Q9NQ38 1064 aaPredicted RBP21.4■■□□□ 1.02
TSPAN4-208ENST00000409531 MBIPQ9NS73 344 aa21.4■■□□□ 1.02
TSPAN4-208ENST00000409531 UBR2Q8IWV8 1755 aa21.39■■□□□ 1.02
TSPAN4-208ENST00000409531 RPS6KA4O75676 772 aa21.39■■□□□ 1.01
TSPAN4-208ENST00000409531 DNAJC10Q8IXB1 793 aa21.39■■□□□ 1.01
TSPAN4-208ENST00000409531 MIS18AQ9NYP9 233 aa21.39■■□□□ 1.01
TSPAN4-208ENST00000409531 FANCIQ9NVI1 1328 aa21.39■■□□□ 1.01
TSPAN4-208ENST00000409531 POLD1P28340 1107 aa21.38■■□□□ 1.01
TSPAN4-208ENST00000409531 CRKLP46109 303 aaKnown RBP21.38■■□□□ 1.01
TSPAN4-208ENST00000409531 TRAPPC3LQ5T215 181 aa21.38■■□□□ 1.01
TSPAN4-208ENST00000409531 TRMT2AQ8IZ69 625 aaKnown RBP21.38■■□□□ 1.01
TSPAN4-208ENST00000409531 ZNF496Q96IT1 587 aaPredicted RBP21.38■■□□□ 1.01
TSPAN4-208ENST00000409531 TSR2Q969E8 191 aaKnown RBP21.37■■□□□ 1.01
TSPAN4-208ENST00000409531 TUBGCP6Q96RT7 1819 aa21.37■■□□□ 1.01
TSPAN4-208ENST00000409531 CYP19A1P11511 503 aaPredicted RBP21.36■■□□□ 1.01
TSPAN4-208ENST00000409531 ADRA2BP18089 450 aa21.36■■□□□ 1.01
TSPAN4-208ENST00000409531 DUSP27Q5VZP5 1158 aa21.36■■□□□ 1.01
TSPAN4-208ENST00000409531 ARXQ96QS3 562 aa21.36■■□□□ 1.01
TSPAN4-208ENST00000409531 KCNQ3O43525 872 aa21.35■■□□□ 1.01
TSPAN4-208ENST00000409531 INTS5Q6P9B9 1019 aaKnown RBP21.35■■□□□ 1.01
TSPAN4-208ENST00000409531 FMNL2Q96PY5 1086 aa21.35■■□□□ 1.01
TSPAN4-208ENST00000409531 TEX13AQ9BXU3 409 aaPredicted RBP21.35■■□□□ 1.01
TSPAN4-208ENST00000409531 KCPQ6ZWJ8 1503 aa21.35■■□□□ 1.01
TSPAN4-208ENST00000409531 UBR3Q6ZT12 1888 aa21.34■■□□□ 1.01
TSPAN4-208ENST00000409531 ARHGEF1Q92888 912 aaKnown RBP21.34■■□□□ 1.01
TSPAN4-208ENST00000409531 HEG1Q9ULI3 1381 aa21.33■■□□□ 1.01
TSPAN4-208ENST00000409531 STARD3NLO95772 234 aa21.33■■□□□ 1.01
TSPAN4-208ENST00000409531 EIF4A1P60842 406 aaKnown RBP21.33■■□□□ 1.01
TSPAN4-208ENST00000409531 CCDC87Q9NVE4 849 aa21.33■■□□□ 1.01
TSPAN4-208ENST00000409531 SOS1Q07889 1333 aaPredicted RBP21.32■■□□□ 1
TSPAN4-208ENST00000409531 RFC4P35249 363 aa21.32■■□□□ 1
TSPAN4-208ENST00000409531 MSL1Q68DK7 614 aa21.32■■□□□ 1
TSPAN4-208ENST00000409531 COL5A3P25940 1745 aaPredicted RBP21.32■■□□□ 1
TSPAN4-208ENST00000409531 MYH14Q7Z406 1995 aaKnown RBP21.31■■□□□ 1
TSPAN4-208ENST00000409531 EXOSC9Q06265 439 aaKnown RBP21.3■■□□□ 1
TSPAN4-208ENST00000409531 CHMP4AQ9BY43 222 aa21.3■■□□□ 1
TSPAN4-208ENST00000409531 FHDC1Q9C0D6 1143 aaPredicted RBP21.3■■□□□ 1
TSPAN4-208ENST00000409531 CICQ96RK0 1608 aaPredicted RBP21.3■■□□□ 1
TSPAN4-208ENST00000409531 HOXB7P09629 217 aa21.29■■□□□ 1
TSPAN4-208ENST00000409531 CT47B1P0C2W7 299 aaPredicted RBP21.29■■□□□ 1
TSPAN4-208ENST00000409531 SYT17Q9BSW7 474 aa21.29■■□□□ 1
TSPAN4-208ENST00000409531 TJP1Q07157 1748 aa21.29■■□□□ 1
TSPAN4-208ENST00000409531 SNRPA1P09661 255 aaKnown RBP21.29■■□□□ 1
TSPAN4-208ENST00000409531 NLGN1Q8N2Q7 840 aa21.29■■□□□ 1
TSPAN4-208ENST00000409531 LAMB4A4D0S4 1761 aa21.28■■□□□ 1
TSPAN4-208ENST00000409531 DCAF8L1A6NGE4 600 aa21.28■■□□□ 1
TSPAN4-208ENST00000409531 TWISTNBQ3B726 338 aaPredicted RBP21.28■■□□□ 1
TSPAN4-208ENST00000409531 ZBTB1Q9Y2K1 713 aa21.28■■□□□ 1
TSPAN4-208ENST00000409531 COL24A1Q17RW2 1714 aa21.27■■□□□ 1
TSPAN4-208ENST00000409531 GIGYF1O75420 1035 aaPredicted RBP21.27■□□□□ 0.99
TSPAN4-208ENST00000409531 C8orf58Q8NAV2 365 aa21.27■□□□□ 0.99
TSPAN4-208ENST00000409531 USP16Q9Y5T5 823 aa21.27■□□□□ 0.99
TSPAN4-208ENST00000409531 CACNA1FO60840 1977 aa21.26■□□□□ 0.99
TSPAN4-208ENST00000409531 GYS1P13807 737 aa21.26■□□□□ 0.99
TSPAN4-208ENST00000409531 CANXP27824 592 aaKnown RBP21.26■□□□□ 0.99
TSPAN4-208ENST00000409531 ZNF428Q96B54 188 aa21.26■□□□□ 0.99
TSPAN4-208ENST00000409531 ELL2O00472 640 aaPredicted RBP21.25■□□□□ 0.99
TSPAN4-208ENST00000409531 KRT24Q2M2I5 525 aa21.25■□□□□ 0.99
TSPAN4-208ENST00000409531 ZPR1O75312 459 aa21.24■□□□□ 0.99
TSPAN4-208ENST00000409531 A1BGP04217 495 aa21.24■□□□□ 0.99
TSPAN4-208ENST00000409531 CENPBP07199 599 aaPredicted RBP21.24■□□□□ 0.99
TSPAN4-208ENST00000409531 EIF5P55010 431 aaKnown RBP21.24■□□□□ 0.99
TSPAN4-208ENST00000409531 TSPYL6Q8N831 410 aa21.24■□□□□ 0.99
TSPAN4-208ENST00000409531 USP42Q9H9J4 1324 aaKnown RBP21.23■□□□□ 0.99
TSPAN4-208ENST00000409531 PRAMEF22A3QJZ6 481 aa21.23■□□□□ 0.99
TSPAN4-208ENST00000409531 VAMP4O75379 141 aa21.23■□□□□ 0.99
TSPAN4-208ENST00000409531 KLHL34Q8N239 644 aa21.23■□□□□ 0.99
TSPAN4-208ENST00000409531 SRP68Q9UHB9 627 aaKnown RBP21.23■□□□□ 0.99
TSPAN4-208ENST00000409531 MMP10P09238 476 aa21.22■□□□□ 0.99
TSPAN4-208ENST00000409531 IL6STP40189 918 aaPredicted RBP21.22■□□□□ 0.99
TSPAN4-208ENST00000409531 NARFQ9UHQ1 456 aa21.22■□□□□ 0.99
TSPAN4-208ENST00000409531 A0A087WZG4 1122 aa21.21■□□□□ 0.99
TSPAN4-208ENST00000409531 CCDC30Q5VVM6 783 aa21.21■□□□□ 0.99
TSPAN4-208ENST00000409531 COL15A1P39059 1388 aa21.2■□□□□ 0.98
TSPAN4-208ENST00000409531 HDGFL1Q5TGJ6 251 aa21.2■□□□□ 0.98
TSPAN4-208ENST00000409531 USPL1Q5W0Q7 1092 aa21.2■□□□□ 0.98
TSPAN4-208ENST00000409531 NPM2Q86SE8 214 aaKnown RBP21.2■□□□□ 0.98
TSPAN4-208ENST00000409531 CD2APQ9Y5K6 639 aa21.2■□□□□ 0.98
TSPAN4-208ENST00000409531 EIF2S2P20042 333 aaKnown RBP21.19■□□□□ 0.98
TSPAN4-208ENST00000409531 FKBP8Q14318 412 aa21.19■□□□□ 0.98
TSPAN4-208ENST00000409531 ALDH1L2Q3SY69 923 aa21.18■□□□□ 0.98
TSPAN4-208ENST00000409531 ZNF784Q8NCA9 323 aaPredicted RBP21.18■□□□□ 0.98
TSPAN4-208ENST00000409531 STK31Q9BXU1 1019 aa21.18■□□□□ 0.98
TSPAN4-208ENST00000409531 ERBB4Q15303 1308 aa21.18■□□□□ 0.98
TSPAN4-208ENST00000409531 ZNF330Q9Y3S2 320 aaPredicted RBP21.17■□□□□ 0.98
TSPAN4-208ENST00000409531 PARP3Q9Y6F1 533 aa21.17■□□□□ 0.98
TSPAN4-208ENST00000409531 TM4SF1P30408 202 aa21.16■□□□□ 0.98
TSPAN4-208ENST00000409531 RCAN3Q9UKA8 241 aa21.16■□□□□ 0.98
TSPAN4-208ENST00000409531 TBC1D2BQ9UPU7 963 aa21.16■□□□□ 0.98
TSPAN4-208ENST00000409531 NBPF26B4DH59 902 aa21.15■□□□□ 0.98
TSPAN4-208ENST00000409531 NBPF10Q6P3W6 841 aaKnown RBP21.15■□□□□ 0.98
TSPAN4-208ENST00000409531 NBPF15Q8N660 670 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms